Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0845

Experiment: LB 30C timecourse1 timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0843 and Psest_0844 overlap by 4 nucleotidesPsest_0844 and Psest_0845 are separated by 16 nucleotidesPsest_0845 and Psest_0846 overlap by 1 nucleotidesPsest_0846 and Psest_0847 are separated by 270 nucleotides Psest_0843: Psest_0843 - hypothetical protein, at 913,228 to 914,604 _0843 Psest_0844: Psest_0844 - High-affinity Fe2+/Pb2+ permease, at 914,601 to 915,458 _0844 Psest_0845: Psest_0845 - hypothetical protein, at 915,475 to 915,813 _0845 Psest_0846: Psest_0846 - Uncharacterized protein probably involved in high-affinity Fe2+ transport, at 915,813 to 916,346 _0846 Psest_0847: Psest_0847 - drug resistance transporter, EmrB/QacA subfamily, at 916,617 to 918,044 _0847 Position (kb) 915 916Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 914.507 kb on + strandat 914.508 kb on - strandat 914.508 kb on - strandat 914.508 kb on - strandat 914.508 kb on - strandat 914.508 kb on - strandat 914.803 kb on + strand, within Psest_0844at 914.803 kb on + strand, within Psest_0844at 914.803 kb on + strand, within Psest_0844at 914.803 kb on + strand, within Psest_0844at 914.817 kb on + strand, within Psest_0844at 914.818 kb on - strand, within Psest_0844at 915.046 kb on + strand, within Psest_0844at 915.047 kb on - strand, within Psest_0844at 915.223 kb on - strand, within Psest_0844at 915.288 kb on + strand, within Psest_0844at 915.473 kb on + strandat 915.474 kb on - strandat 915.474 kb on - strandat 915.476 kb on + strandat 915.476 kb on + strandat 915.476 kb on + strandat 915.476 kb on + strandat 915.477 kb on - strandat 915.477 kb on - strandat 915.477 kb on - strandat 915.729 kb on - strand, within Psest_0845at 915.857 kb on - strandat 915.955 kb on + strand, within Psest_0846at 915.955 kb on + strand, within Psest_0846at 915.956 kb on - strand, within Psest_0846at 915.956 kb on - strand, within Psest_0846at 915.967 kb on + strand, within Psest_0846at 916.081 kb on + strand, within Psest_0846at 916.082 kb on - strand, within Psest_0846at 916.082 kb on - strand, within Psest_0846at 916.455 kb on + strandat 916.475 kb on + strandat 916.475 kb on + strandat 916.584 kb on + strandat 916.636 kb on + strandat 916.636 kb on + strandat 916.637 kb on - strandat 916.637 kb on - strandat 916.788 kb on + strand, within Psest_0847at 916.788 kb on + strand, within Psest_0847at 916.788 kb on + strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847at 916.789 kb on - strand, within Psest_0847

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1
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914,507 + -0.6
914,508 - -1.4
914,508 - +2.4
914,508 - -0.6
914,508 - +1.4
914,508 - -1.4
914,803 + Psest_0844 0.24 +1.8
914,803 + Psest_0844 0.24 -0.2
914,803 + Psest_0844 0.24 -0.6
914,803 + Psest_0844 0.24 -1.4
914,817 + Psest_0844 0.25 +1.4
914,818 - Psest_0844 0.25 -1.2
915,046 + Psest_0844 0.52 +0.9
915,047 - Psest_0844 0.52 +0.0
915,223 - Psest_0844 0.72 -0.6
915,288 + Psest_0844 0.80 -0.5
915,473 + -0.2
915,474 - -0.0
915,474 - +0.1
915,476 + -0.6
915,476 + +1.7
915,476 + -2.2
915,476 + -0.2
915,477 - +2.0
915,477 - +0.4
915,477 - +0.4
915,729 - Psest_0845 0.75 -0.5
915,857 - +2.4
915,955 + Psest_0846 0.27 -0.6
915,955 + Psest_0846 0.27 +0.6
915,956 - Psest_0846 0.27 -0.2
915,956 - Psest_0846 0.27 -0.6
915,967 + Psest_0846 0.29 -0.9
916,081 + Psest_0846 0.50 +1.4
916,082 - Psest_0846 0.50 +0.5
916,082 - Psest_0846 0.50 -0.5
916,455 + -2.1
916,475 + -2.5
916,475 + -0.2
916,584 + +2.7
916,636 + +0.5
916,636 + -2.8
916,637 - +0.7
916,637 - +0.1
916,788 + Psest_0847 0.12 +0.7
916,788 + Psest_0847 0.12 +1.0
916,788 + Psest_0847 0.12 +0.3
916,789 - Psest_0847 0.12 +0.5
916,789 - Psest_0847 0.12 +0.8
916,789 - Psest_0847 0.12 -0.1
916,789 - Psest_0847 0.12 +0.8
916,789 - Psest_0847 0.12 +1.2
916,789 - Psest_0847 0.12 -1.4
916,789 - Psest_0847 0.12 -0.6

Or see this region's nucleotide sequence