Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0843 and Psest_0844 overlap by 4 nucleotides Psest_0844 and Psest_0845 are separated by 16 nucleotides Psest_0845 and Psest_0846 overlap by 1 nucleotides Psest_0846 and Psest_0847 are separated by 270 nucleotides
Psest_0843: Psest_0843 - hypothetical protein, at 913,228 to 914,604
_0843
Psest_0844: Psest_0844 - High-affinity Fe2+/Pb2+ permease, at 914,601 to 915,458
_0844
Psest_0845: Psest_0845 - hypothetical protein, at 915,475 to 915,813
_0845
Psest_0846: Psest_0846 - Uncharacterized protein probably involved in high-affinity Fe2+ transport, at 915,813 to 916,346
_0846
Psest_0847: Psest_0847 - drug resistance transporter, EmrB/QacA subfamily, at 916,617 to 918,044
_0847
Position (kb)
915
916 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 914.507 kb on + strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.508 kb on - strand at 914.803 kb on + strand, within Psest_0844 at 914.803 kb on + strand, within Psest_0844 at 914.803 kb on + strand, within Psest_0844 at 914.803 kb on + strand, within Psest_0844 at 914.817 kb on + strand, within Psest_0844 at 914.818 kb on - strand, within Psest_0844 at 915.046 kb on + strand, within Psest_0844 at 915.047 kb on - strand, within Psest_0844 at 915.223 kb on - strand, within Psest_0844 at 915.288 kb on + strand, within Psest_0844 at 915.473 kb on + strand at 915.474 kb on - strand at 915.474 kb on - strand at 915.476 kb on + strand at 915.476 kb on + strand at 915.476 kb on + strand at 915.476 kb on + strand at 915.477 kb on - strand at 915.477 kb on - strand at 915.477 kb on - strand at 915.729 kb on - strand, within Psest_0845 at 915.857 kb on - strand at 915.955 kb on + strand, within Psest_0846 at 915.955 kb on + strand, within Psest_0846 at 915.956 kb on - strand, within Psest_0846 at 915.956 kb on - strand, within Psest_0846 at 915.967 kb on + strand, within Psest_0846 at 916.081 kb on + strand, within Psest_0846 at 916.082 kb on - strand, within Psest_0846 at 916.082 kb on - strand, within Psest_0846 at 916.455 kb on + strand at 916.475 kb on + strand at 916.475 kb on + strand at 916.584 kb on + strand at 916.636 kb on + strand at 916.636 kb on + strand at 916.637 kb on - strand at 916.637 kb on - strand at 916.788 kb on + strand, within Psest_0847 at 916.788 kb on + strand, within Psest_0847 at 916.788 kb on + strand, within Psest_0847 at 916.789 kb on - strand, within Psest_0847 at 916.789 kb on - strand, within Psest_0847 at 916.789 kb on - strand, within Psest_0847 at 916.789 kb on - strand, within Psest_0847 at 916.789 kb on - strand, within Psest_0847 at 916.789 kb on - strand, within Psest_0847 at 916.789 kb on - strand, within Psest_0847
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 914,507 + -0.6 914,508 - -1.4 914,508 - +2.4 914,508 - -0.6 914,508 - +1.4 914,508 - -1.4 914,803 + Psest_0844 0.24 +1.8 914,803 + Psest_0844 0.24 -0.2 914,803 + Psest_0844 0.24 -0.6 914,803 + Psest_0844 0.24 -1.4 914,817 + Psest_0844 0.25 +1.4 914,818 - Psest_0844 0.25 -1.2 915,046 + Psest_0844 0.52 +0.9 915,047 - Psest_0844 0.52 +0.0 915,223 - Psest_0844 0.72 -0.6 915,288 + Psest_0844 0.80 -0.5 915,473 + -0.2 915,474 - -0.0 915,474 - +0.1 915,476 + -0.6 915,476 + +1.7 915,476 + -2.2 915,476 + -0.2 915,477 - +2.0 915,477 - +0.4 915,477 - +0.4 915,729 - Psest_0845 0.75 -0.5 915,857 - +2.4 915,955 + Psest_0846 0.27 -0.6 915,955 + Psest_0846 0.27 +0.6 915,956 - Psest_0846 0.27 -0.2 915,956 - Psest_0846 0.27 -0.6 915,967 + Psest_0846 0.29 -0.9 916,081 + Psest_0846 0.50 +1.4 916,082 - Psest_0846 0.50 +0.5 916,082 - Psest_0846 0.50 -0.5 916,455 + -2.1 916,475 + -2.5 916,475 + -0.2 916,584 + +2.7 916,636 + +0.5 916,636 + -2.8 916,637 - +0.7 916,637 - +0.1 916,788 + Psest_0847 0.12 +0.7 916,788 + Psest_0847 0.12 +1.0 916,788 + Psest_0847 0.12 +0.3 916,789 - Psest_0847 0.12 +0.5 916,789 - Psest_0847 0.12 +0.8 916,789 - Psest_0847 0.12 -0.1 916,789 - Psest_0847 0.12 +0.8 916,789 - Psest_0847 0.12 +1.2 916,789 - Psest_0847 0.12 -1.4 916,789 - Psest_0847 0.12 -0.6
Or see this region's nucleotide sequence