Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0811 and Psest_0812 are separated by 170 nucleotides Psest_0812 and Psest_0813 are separated by 3 nucleotides Psest_0813 and Psest_0814 overlap by 17 nucleotides Psest_0814 and Psest_0815 are separated by 343 nucleotides
Psest_0811: Psest_0811 - heme d1 biosynthesis radical SAM protein NirJ, at 886,662 to 887,843
_0811
Psest_0812: Psest_0812 - hypothetical protein, at 888,014 to 888,262
_0812
Psest_0813: Psest_0813 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 888,266 to 888,853
_0813
Psest_0814: Psest_0814 - MoxR-like ATPases, at 888,837 to 889,649
_0814
Psest_0815: Psest_0815 - Cytochrome c, mono- and diheme variants, at 889,993 to 891,675
_0815
Position (kb) 888
889
890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 887.955 kb on - strand at 888.267 kb on + strand at 888.267 kb on + strand at 888.267 kb on + strand at 888.267 kb on + strand at 888.268 kb on - strand at 888.268 kb on - strand at 888.268 kb on - strand at 888.279 kb on + strand at 888.279 kb on + strand at 888.279 kb on + strand at 888.311 kb on - strand at 888.328 kb on - strand, within Psest_0813 at 888.460 kb on - strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.540 kb on + strand, within Psest_0813 at 888.541 kb on - strand, within Psest_0813 at 888.605 kb on + strand, within Psest_0813 at 888.605 kb on + strand, within Psest_0813 at 888.606 kb on - strand, within Psest_0813 at 889.195 kb on + strand, within Psest_0814 at 889.195 kb on + strand, within Psest_0814 at 889.196 kb on - strand, within Psest_0814 at 889.196 kb on - strand, within Psest_0814 at 889.196 kb on - strand, within Psest_0814 at 889.460 kb on - strand, within Psest_0814 at 889.598 kb on - strand at 889.598 kb on - strand at 889.658 kb on - strand at 889.658 kb on - strand at 889.658 kb on - strand at 889.765 kb on + strand at 889.765 kb on + strand at 889.766 kb on - strand at 889.766 kb on - strand at 889.900 kb on - strand at 889.950 kb on + strand at 889.954 kb on + strand at 889.954 kb on + strand at 889.955 kb on - strand at 889.955 kb on - strand at 889.955 kb on - strand at 889.982 kb on - strand at 890.008 kb on - strand at 890.008 kb on - strand at 890.013 kb on + strand at 890.040 kb on - strand at 890.040 kb on - strand at 890.119 kb on + strand at 890.119 kb on + strand at 890.119 kb on + strand at 890.119 kb on + strand at 890.119 kb on + strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.120 kb on - strand at 890.275 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.302 kb on + strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.303 kb on - strand, within Psest_0815 at 890.348 kb on - strand, within Psest_0815 at 890.348 kb on - strand, within Psest_0815 at 890.532 kb on + strand, within Psest_0815 at 890.532 kb on + strand, within Psest_0815 at 890.532 kb on + strand, within Psest_0815 at 890.533 kb on - strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.605 kb on + strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.606 kb on - strand, within Psest_0815 at 890.607 kb on + strand, within Psest_0815 at 890.607 kb on + strand, within Psest_0815
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 887,955 - +1.6 888,267 + +1.0 888,267 + +0.4 888,267 + +1.0 888,267 + -1.2 888,268 - +0.6 888,268 - +0.7 888,268 - +0.5 888,279 + -0.6 888,279 + -2.3 888,279 + +3.1 888,311 - -0.3 888,328 - Psest_0813 0.11 -0.6 888,460 - Psest_0813 0.33 -0.4 888,540 + Psest_0813 0.47 -0.3 888,540 + Psest_0813 0.47 -0.1 888,540 + Psest_0813 0.47 -0.5 888,540 + Psest_0813 0.47 -0.3 888,540 + Psest_0813 0.47 -0.4 888,540 + Psest_0813 0.47 +0.3 888,541 - Psest_0813 0.47 -1.6 888,605 + Psest_0813 0.58 +0.6 888,605 + Psest_0813 0.58 +0.4 888,606 - Psest_0813 0.58 -2.2 889,195 + Psest_0814 0.44 -0.9 889,195 + Psest_0814 0.44 -0.7 889,196 - Psest_0814 0.44 -1.1 889,196 - Psest_0814 0.44 -1.2 889,196 - Psest_0814 0.44 -1.2 889,460 - Psest_0814 0.77 -1.8 889,598 - -0.1 889,598 - +1.1 889,658 - +0.6 889,658 - -0.2 889,658 - +1.4 889,765 + +0.4 889,765 + +0.1 889,766 - -0.7 889,766 - -0.4 889,900 - -0.5 889,950 + +0.2 889,954 + -0.3 889,954 + +0.5 889,955 - +0.5 889,955 - -0.1 889,955 - +0.0 889,982 - +0.6 890,008 - -0.5 890,008 - +1.2 890,013 + +0.2 890,040 - -0.9 890,040 - -0.8 890,119 + +1.4 890,119 + +0.0 890,119 + -0.2 890,119 + -0.5 890,119 + +0.8 890,120 - +0.4 890,120 - -0.9 890,120 - +0.8 890,120 - +0.8 890,120 - -1.0 890,120 - -2.9 890,120 - +1.0 890,275 + Psest_0815 0.17 +0.5 890,302 + Psest_0815 0.18 -1.2 890,302 + Psest_0815 0.18 -2.2 890,302 + Psest_0815 0.18 -0.1 890,302 + Psest_0815 0.18 +0.4 890,302 + Psest_0815 0.18 +0.7 890,302 + Psest_0815 0.18 +1.5 890,302 + Psest_0815 0.18 -0.4 890,302 + Psest_0815 0.18 +0.5 890,303 - Psest_0815 0.18 -0.2 890,303 - Psest_0815 0.18 +1.1 890,303 - Psest_0815 0.18 +1.4 890,303 - Psest_0815 0.18 +0.7 890,303 - Psest_0815 0.18 +1.4 890,303 - Psest_0815 0.18 -0.6 890,348 - Psest_0815 0.21 +0.4 890,348 - Psest_0815 0.21 -0.4 890,532 + Psest_0815 0.32 +0.8 890,532 + Psest_0815 0.32 -1.4 890,532 + Psest_0815 0.32 +0.1 890,533 - Psest_0815 0.32 -0.6 890,605 + Psest_0815 0.36 +0.2 890,605 + Psest_0815 0.36 -0.1 890,605 + Psest_0815 0.36 -0.6 890,605 + Psest_0815 0.36 +1.1 890,605 + Psest_0815 0.36 -0.2 890,605 + Psest_0815 0.36 -1.2 890,605 + Psest_0815 0.36 -0.2 890,606 - Psest_0815 0.36 +1.5 890,606 - Psest_0815 0.36 +1.9 890,606 - Psest_0815 0.36 +0.6 890,606 - Psest_0815 0.36 -0.2 890,606 - Psest_0815 0.36 -0.7 890,606 - Psest_0815 0.36 +1.2 890,607 + Psest_0815 0.36 -0.2 890,607 + Psest_0815 0.36 -0.2
Or see this region's nucleotide sequence