Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0677 and Psest_0678 are separated by 74 nucleotides Psest_0678 and Psest_0679 overlap by 13 nucleotides Psest_0679 and Psest_0680 overlap by 4 nucleotides
Psest_0677: Psest_0677 - iron-sulfur cluster binding protein, putative, at 739,197 to 740,270
_0677
Psest_0678: Psest_0678 - yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region, at 740,345 to 741,835
_0678
Psest_0679: Psest_0679 - ATPase, YjeE family, at 741,823 to 742,293
_0679
Psest_0680: Psest_0680 - N-acetylmuramoyl-L-alanine amidase, at 742,290 to 743,726
_0680
Position (kb) 740
741
742 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 739.537 kb on - strand, within Psest_0677 at 739.600 kb on + strand, within Psest_0677 at 739.969 kb on + strand, within Psest_0677 at 739.969 kb on + strand, within Psest_0677 at 739.969 kb on + strand, within Psest_0677 at 739.969 kb on + strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 739.970 kb on - strand, within Psest_0677 at 740.023 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.107 kb on + strand, within Psest_0677 at 740.108 kb on - strand, within Psest_0677 at 740.108 kb on - strand, within Psest_0677 at 740.108 kb on - strand, within Psest_0677 at 740.303 kb on + strand at 740.303 kb on + strand at 740.304 kb on - strand at 740.304 kb on - strand at 740.304 kb on - strand at 740.305 kb on + strand at 740.305 kb on + strand at 740.305 kb on + strand at 740.305 kb on + strand at 740.305 kb on + strand at 740.305 kb on + strand at 740.372 kb on + strand at 740.372 kb on + strand at 740.372 kb on + strand at 740.374 kb on + strand at 740.374 kb on + strand at 740.374 kb on + strand at 740.762 kb on + strand, within Psest_0678 at 741.251 kb on + strand, within Psest_0678 at 741.533 kb on + strand, within Psest_0678 at 741.565 kb on + strand, within Psest_0678 at 741.565 kb on + strand, within Psest_0678 at 741.841 kb on + strand at 742.289 kb on + strand at 742.289 kb on + strand at 742.289 kb on + strand at 742.295 kb on + strand at 742.295 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 739,537 - Psest_0677 0.32 +0.3 739,600 + Psest_0677 0.38 +0.3 739,969 + Psest_0677 0.72 +2.0 739,969 + Psest_0677 0.72 +0.6 739,969 + Psest_0677 0.72 +0.2 739,969 + Psest_0677 0.72 +0.7 739,970 - Psest_0677 0.72 +0.2 739,970 - Psest_0677 0.72 -0.3 739,970 - Psest_0677 0.72 -0.2 739,970 - Psest_0677 0.72 -2.9 739,970 - Psest_0677 0.72 -3.1 739,970 - Psest_0677 0.72 +1.1 739,970 - Psest_0677 0.72 -0.3 740,023 + Psest_0677 0.77 +0.0 740,107 + Psest_0677 0.85 -1.8 740,107 + Psest_0677 0.85 -0.0 740,107 + Psest_0677 0.85 +3.9 740,107 + Psest_0677 0.85 +0.0 740,107 + Psest_0677 0.85 +0.3 740,107 + Psest_0677 0.85 +0.3 740,107 + Psest_0677 0.85 -1.3 740,108 - Psest_0677 0.85 -0.5 740,108 - Psest_0677 0.85 +0.2 740,108 - Psest_0677 0.85 -0.1 740,303 + +1.3 740,303 + +2.9 740,304 - -0.3 740,304 - -1.0 740,304 - +0.6 740,305 + -0.3 740,305 + -1.3 740,305 + -0.7 740,305 + -1.5 740,305 + +0.3 740,305 + -1.8 740,372 + +1.0 740,372 + +2.0 740,372 + +1.8 740,374 + +0.3 740,374 + +1.3 740,374 + -1.7 740,762 + Psest_0678 0.28 -0.3 741,251 + Psest_0678 0.61 -1.0 741,533 + Psest_0678 0.80 -1.0 741,565 + Psest_0678 0.82 +0.3 741,565 + Psest_0678 0.82 -2.0 741,841 + +1.1 742,289 + +1.0 742,289 + +2.1 742,289 + +0.6 742,295 + +0.1 742,295 + +2.1
Or see this region's nucleotide sequence