Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0515

Experiment: LB 30C timecourse1 timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0514 and Psest_0515 overlap by 4 nucleotidesPsest_0515 and Psest_0516 are separated by 48 nucleotides Psest_0514: Psest_0514 - lytic murein transglycosylase B, at 567,787 to 568,812 _0514 Psest_0515: Psest_0515 - rare lipoprotein A, at 568,809 to 569,801 _0515 Psest_0516: Psest_0516 - D-alanyl-D-alanine carboxypeptidase, at 569,850 to 571,007 _0516 Position (kb) 568 569 570Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 567.864 kb on + strandat 567.898 kb on + strand, within Psest_0514at 567.898 kb on + strand, within Psest_0514at 567.946 kb on + strand, within Psest_0514at 567.996 kb on + strand, within Psest_0514at 567.996 kb on + strand, within Psest_0514at 567.996 kb on + strand, within Psest_0514at 567.996 kb on + strand, within Psest_0514at 567.996 kb on + strand, within Psest_0514at 568.100 kb on + strand, within Psest_0514at 568.101 kb on - strand, within Psest_0514at 568.201 kb on + strand, within Psest_0514at 568.201 kb on + strand, within Psest_0514at 568.201 kb on + strand, within Psest_0514at 568.201 kb on + strand, within Psest_0514at 568.357 kb on + strand, within Psest_0514at 568.357 kb on + strand, within Psest_0514at 568.357 kb on + strand, within Psest_0514at 568.408 kb on + strand, within Psest_0514at 568.486 kb on + strand, within Psest_0514at 568.486 kb on + strand, within Psest_0514at 568.486 kb on + strand, within Psest_0514at 568.720 kb on + strandat 568.720 kb on + strandat 568.735 kb on + strandat 568.737 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.753 kb on + strandat 568.754 kb on - strandat 568.754 kb on - strandat 568.754 kb on - strandat 568.754 kb on - strandat 568.754 kb on - strandat 568.754 kb on - strandat 568.754 kb on - strandat 568.754 kb on - strandat 568.754 kb on - strandat 568.754 kb on - strandat 568.754 kb on - strandat 568.754 kb on - strandat 568.817 kb on + strandat 568.817 kb on + strandat 568.817 kb on + strandat 569.025 kb on + strand, within Psest_0515at 569.026 kb on - strand, within Psest_0515at 569.026 kb on - strand, within Psest_0515at 569.026 kb on - strand, within Psest_0515at 569.040 kb on + strand, within Psest_0515at 569.061 kb on + strand, within Psest_0515at 569.061 kb on + strand, within Psest_0515at 569.061 kb on + strand, within Psest_0515at 569.061 kb on + strand, within Psest_0515at 569.061 kb on + strand, within Psest_0515at 569.160 kb on + strand, within Psest_0515at 569.211 kb on + strand, within Psest_0515at 569.211 kb on + strand, within Psest_0515at 569.302 kb on + strand, within Psest_0515at 569.674 kb on + strand, within Psest_0515at 569.675 kb on - strand, within Psest_0515at 569.675 kb on - strand, within Psest_0515at 569.818 kb on - strandat 569.818 kb on - strandat 569.818 kb on - strandat 569.826 kb on + strandat 569.826 kb on + strandat 569.827 kb on - strandat 569.881 kb on + strandat 569.881 kb on + strandat 569.882 kb on - strandat 569.882 kb on - strandat 569.882 kb on - strandat 569.996 kb on - strand, within Psest_0516at 570.060 kb on + strand, within Psest_0516at 570.061 kb on - strand, within Psest_0516at 570.061 kb on - strand, within Psest_0516at 570.061 kb on - strand, within Psest_0516at 570.061 kb on - strand, within Psest_0516at 570.061 kb on - strand, within Psest_0516at 570.061 kb on - strand, within Psest_0516at 570.061 kb on - strand, within Psest_0516at 570.061 kb on - strand, within Psest_0516at 570.152 kb on + strand, within Psest_0516at 570.153 kb on - strand, within Psest_0516at 570.153 kb on - strand, within Psest_0516at 570.284 kb on + strand, within Psest_0516at 570.284 kb on + strand, within Psest_0516at 570.284 kb on + strand, within Psest_0516at 570.285 kb on - strand, within Psest_0516at 570.285 kb on - strand, within Psest_0516at 570.285 kb on - strand, within Psest_0516at 570.285 kb on - strand, within Psest_0516at 570.408 kb on + strand, within Psest_0516at 570.408 kb on + strand, within Psest_0516at 570.408 kb on + strand, within Psest_0516at 570.408 kb on + strand, within Psest_0516at 570.408 kb on + strand, within Psest_0516at 570.408 kb on + strand, within Psest_0516at 570.408 kb on + strand, within Psest_0516at 570.408 kb on + strand, within Psest_0516at 570.408 kb on + strand, within Psest_0516at 570.408 kb on + strand, within Psest_0516at 570.408 kb on + strand, within Psest_0516at 570.409 kb on - strand, within Psest_0516at 570.409 kb on - strand, within Psest_0516at 570.409 kb on - strand, within Psest_0516at 570.409 kb on - strand, within Psest_0516at 570.435 kb on + strand, within Psest_0516at 570.435 kb on + strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.436 kb on - strand, within Psest_0516at 570.657 kb on + strand, within Psest_0516at 570.658 kb on - strand, within Psest_0516at 570.690 kb on + strand, within Psest_0516at 570.691 kb on - strand, within Psest_0516at 570.702 kb on - strand, within Psest_0516

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1
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567,864 + -0.4
567,898 + Psest_0514 0.11 -0.3
567,898 + Psest_0514 0.11 -1.2
567,946 + Psest_0514 0.15 +1.2
567,996 + Psest_0514 0.20 +0.7
567,996 + Psest_0514 0.20 +0.4
567,996 + Psest_0514 0.20 -2.6
567,996 + Psest_0514 0.20 -1.7
567,996 + Psest_0514 0.20 -1.8
568,100 + Psest_0514 0.31 +0.8
568,101 - Psest_0514 0.31 -2.4
568,201 + Psest_0514 0.40 -0.5
568,201 + Psest_0514 0.40 +0.1
568,201 + Psest_0514 0.40 -2.3
568,201 + Psest_0514 0.40 -0.9
568,357 + Psest_0514 0.56 +1.2
568,357 + Psest_0514 0.56 +0.2
568,357 + Psest_0514 0.56 -1.5
568,408 + Psest_0514 0.61 -2.1
568,486 + Psest_0514 0.68 +0.7
568,486 + Psest_0514 0.68 -0.7
568,486 + Psest_0514 0.68 -0.5
568,720 + +0.2
568,720 + +2.1
568,735 + +0.4
568,737 + +0.6
568,753 + +0.4
568,753 + +0.1
568,753 + +0.8
568,753 + -1.0
568,753 + +0.5
568,753 + -0.0
568,753 + +0.9
568,753 + +0.3
568,753 + +0.6
568,753 + +0.3
568,753 + +0.2
568,753 + -2.0
568,753 + +0.3
568,753 + +1.9
568,753 + +1.0
568,753 + -1.9
568,753 + -0.1
568,753 + -2.1
568,753 + -0.5
568,753 + -0.2
568,753 + +0.4
568,753 + +1.7
568,753 + +2.6
568,753 + +0.1
568,753 + -0.1
568,753 + -0.3
568,754 - -1.0
568,754 - +2.0
568,754 - -1.4
568,754 - -1.0
568,754 - -1.2
568,754 - -2.4
568,754 - -2.2
568,754 - -2.2
568,754 - -2.4
568,754 - +0.4
568,754 - -2.6
568,754 - -0.6
568,817 + -0.4
568,817 + -2.5
568,817 + +1.5
569,025 + Psest_0515 0.22 -3.1
569,026 - Psest_0515 0.22 -1.2
569,026 - Psest_0515 0.22 -2.1
569,026 - Psest_0515 0.22 -0.6
569,040 + Psest_0515 0.23 +2.4
569,061 + Psest_0515 0.25 +0.4
569,061 + Psest_0515 0.25 -2.0
569,061 + Psest_0515 0.25 -0.2
569,061 + Psest_0515 0.25 -1.2
569,061 + Psest_0515 0.25 -0.2
569,160 + Psest_0515 0.35 -0.2
569,211 + Psest_0515 0.40 -0.6
569,211 + Psest_0515 0.40 -0.6
569,302 + Psest_0515 0.50 -1.0
569,674 + Psest_0515 0.87 -0.2
569,675 - Psest_0515 0.87 -0.2
569,675 - Psest_0515 0.87 -2.8
569,818 - -1.5
569,818 - -0.6
569,818 - -1.1
569,826 + -0.2
569,826 + +0.4
569,827 - -0.6
569,881 + -0.5
569,881 + +0.5
569,882 - +0.9
569,882 - -1.0
569,882 - -0.6
569,996 - Psest_0516 0.13 -0.3
570,060 + Psest_0516 0.18 -0.2
570,061 - Psest_0516 0.18 +0.1
570,061 - Psest_0516 0.18 +0.2
570,061 - Psest_0516 0.18 -1.2
570,061 - Psest_0516 0.18 -0.8
570,061 - Psest_0516 0.18 -0.2
570,061 - Psest_0516 0.18 -1.3
570,061 - Psest_0516 0.18 +2.0
570,061 - Psest_0516 0.18 -1.4
570,152 + Psest_0516 0.26 +1.0
570,153 - Psest_0516 0.26 +0.8
570,153 - Psest_0516 0.26 +1.9
570,284 + Psest_0516 0.37 -2.4
570,284 + Psest_0516 0.37 -0.1
570,284 + Psest_0516 0.37 -0.6
570,285 - Psest_0516 0.38 -1.6
570,285 - Psest_0516 0.38 -0.2
570,285 - Psest_0516 0.38 -0.9
570,285 - Psest_0516 0.38 -1.1
570,408 + Psest_0516 0.48 -1.6
570,408 + Psest_0516 0.48 -3.2
570,408 + Psest_0516 0.48 -1.0
570,408 + Psest_0516 0.48 -1.2
570,408 + Psest_0516 0.48 -1.8
570,408 + Psest_0516 0.48 -1.8
570,408 + Psest_0516 0.48 -0.5
570,408 + Psest_0516 0.48 -1.0
570,408 + Psest_0516 0.48 -1.7
570,408 + Psest_0516 0.48 -0.0
570,408 + Psest_0516 0.48 -3.6
570,409 - Psest_0516 0.48 -0.7
570,409 - Psest_0516 0.48 -2.3
570,409 - Psest_0516 0.48 -1.4
570,409 - Psest_0516 0.48 +0.1
570,435 + Psest_0516 0.51 -0.2
570,435 + Psest_0516 0.51 -0.8
570,436 - Psest_0516 0.51 -1.4
570,436 - Psest_0516 0.51 -0.8
570,436 - Psest_0516 0.51 -0.2
570,436 - Psest_0516 0.51 -1.2
570,436 - Psest_0516 0.51 -2.2
570,436 - Psest_0516 0.51 -1.9
570,436 - Psest_0516 0.51 -0.2
570,436 - Psest_0516 0.51 +0.3
570,436 - Psest_0516 0.51 -0.5
570,436 - Psest_0516 0.51 +0.4
570,436 - Psest_0516 0.51 -2.1
570,436 - Psest_0516 0.51 -2.3
570,436 - Psest_0516 0.51 -1.2
570,436 - Psest_0516 0.51 -1.6
570,436 - Psest_0516 0.51 -0.8
570,657 + Psest_0516 0.70 -0.6
570,658 - Psest_0516 0.70 -2.8
570,690 + Psest_0516 0.73 +0.4
570,691 - Psest_0516 0.73 -1.5
570,702 - Psest_0516 0.74 -0.8

Or see this region's nucleotide sequence