Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4150 and Psest_4151 are separated by 50 nucleotides Psest_4151 and Psest_4152 overlap by 1 nucleotides Psest_4152 and Psest_4153 overlap by 1 nucleotides Psest_4153 and Psest_4154 are separated by 98 nucleotides
Psest_4150: Psest_4150 - fagellar hook-basal body proteins, at 4,333,168 to 4,334,358
_4150
Psest_4151: Psest_4151 - Flagellar hook capping protein, at 4,334,409 to 4,335,074
_4151
Psest_4152: Psest_4152 - flagellar basal-body rod protein FlgC, at 4,335,074 to 4,335,502
_4152
Psest_4153: Psest_4153 - flagellar basal-body rod protein FlgB, at 4,335,502 to 4,335,867
_4153
Psest_4154: Psest_4154 - flagella basal body P-ring formation protein FlgA, at 4,335,966 to 4,336,754
_4154
Position (kb)
4334
4335
4336 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4333.469 kb on + strand, within Psest_4150 at 4333.469 kb on + strand, within Psest_4150 at 4333.470 kb on - strand, within Psest_4150 at 4333.478 kb on + strand, within Psest_4150 at 4333.479 kb on - strand, within Psest_4150 at 4333.589 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.730 kb on + strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.731 kb on - strand, within Psest_4150 at 4333.733 kb on + strand, within Psest_4150 at 4333.733 kb on + strand, within Psest_4150 at 4333.733 kb on + strand, within Psest_4150 at 4333.772 kb on + strand, within Psest_4150 at 4333.772 kb on + strand, within Psest_4150 at 4333.772 kb on + strand, within Psest_4150 at 4333.772 kb on + strand, within Psest_4150 at 4333.808 kb on + strand, within Psest_4150 at 4333.808 kb on + strand, within Psest_4150 at 4333.808 kb on + strand, within Psest_4150 at 4333.808 kb on + strand, within Psest_4150 at 4333.808 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.823 kb on + strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.824 kb on - strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.835 kb on + strand, within Psest_4150 at 4333.836 kb on - strand, within Psest_4150 at 4333.836 kb on - strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.039 kb on + strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.040 kb on - strand, within Psest_4150 at 4334.094 kb on + strand, within Psest_4150 at 4334.443 kb on + strand at 4334.573 kb on - strand, within Psest_4151 at 4334.938 kb on + strand, within Psest_4151 at 4334.938 kb on + strand, within Psest_4151 at 4334.938 kb on + strand, within Psest_4151 at 4334.939 kb on - strand, within Psest_4151 at 4334.939 kb on - strand, within Psest_4151 at 4335.068 kb on + strand at 4335.207 kb on + strand, within Psest_4152 at 4335.207 kb on + strand, within Psest_4152 at 4335.207 kb on + strand, within Psest_4152 at 4335.207 kb on + strand, within Psest_4152 at 4335.207 kb on + strand, within Psest_4152 at 4335.207 kb on + strand, within Psest_4152 at 4335.208 kb on - strand, within Psest_4152 at 4335.213 kb on + strand, within Psest_4152 at 4335.213 kb on + strand, within Psest_4152 at 4335.214 kb on - strand, within Psest_4152 at 4335.288 kb on - strand, within Psest_4152 at 4335.346 kb on - strand, within Psest_4152 at 4335.483 kb on + strand at 4335.483 kb on + strand at 4335.483 kb on + strand at 4335.484 kb on - strand at 4335.484 kb on - strand at 4335.859 kb on + strand at 4335.860 kb on - strand at 4335.861 kb on + strand at 4335.861 kb on + strand at 4335.861 kb on + strand at 4335.862 kb on - strand at 4335.862 kb on - strand at 4335.946 kb on + strand at 4335.946 kb on + strand at 4335.947 kb on - strand at 4336.049 kb on + strand, within Psest_4154 at 4336.049 kb on + strand, within Psest_4154 at 4336.049 kb on + strand, within Psest_4154 at 4336.049 kb on + strand, within Psest_4154 at 4336.049 kb on + strand, within Psest_4154 at 4336.050 kb on - strand, within Psest_4154
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 4,333,469 + Psest_4150 0.25 +0.5 4,333,469 + Psest_4150 0.25 -1.8 4,333,470 - Psest_4150 0.25 -0.1 4,333,478 + Psest_4150 0.26 +0.4 4,333,479 - Psest_4150 0.26 -1.3 4,333,589 + Psest_4150 0.35 -0.3 4,333,730 + Psest_4150 0.47 -0.8 4,333,730 + Psest_4150 0.47 +0.7 4,333,730 + Psest_4150 0.47 -0.8 4,333,730 + Psest_4150 0.47 +0.5 4,333,730 + Psest_4150 0.47 -0.8 4,333,730 + Psest_4150 0.47 +0.5 4,333,730 + Psest_4150 0.47 -0.2 4,333,730 + Psest_4150 0.47 -0.8 4,333,731 - Psest_4150 0.47 -1.8 4,333,731 - Psest_4150 0.47 -1.8 4,333,731 - Psest_4150 0.47 -0.1 4,333,731 - Psest_4150 0.47 +0.6 4,333,731 - Psest_4150 0.47 -0.2 4,333,731 - Psest_4150 0.47 -1.1 4,333,731 - Psest_4150 0.47 -0.1 4,333,733 + Psest_4150 0.47 -1.1 4,333,733 + Psest_4150 0.47 +2.2 4,333,733 + Psest_4150 0.47 -0.3 4,333,772 + Psest_4150 0.51 +1.1 4,333,772 + Psest_4150 0.51 -0.8 4,333,772 + Psest_4150 0.51 +1.4 4,333,772 + Psest_4150 0.51 +1.5 4,333,808 + Psest_4150 0.54 -0.3 4,333,808 + Psest_4150 0.54 -0.8 4,333,808 + Psest_4150 0.54 +0.2 4,333,808 + Psest_4150 0.54 +0.2 4,333,808 + Psest_4150 0.54 +0.9 4,333,823 + Psest_4150 0.55 -0.5 4,333,823 + Psest_4150 0.55 +0.3 4,333,823 + Psest_4150 0.55 +0.1 4,333,823 + Psest_4150 0.55 -0.8 4,333,823 + Psest_4150 0.55 -1.5 4,333,823 + Psest_4150 0.55 -2.3 4,333,823 + Psest_4150 0.55 +0.0 4,333,824 - Psest_4150 0.55 +0.5 4,333,824 - Psest_4150 0.55 +1.0 4,333,824 - Psest_4150 0.55 +0.5 4,333,824 - Psest_4150 0.55 -0.1 4,333,824 - Psest_4150 0.55 +0.1 4,333,824 - Psest_4150 0.55 -1.5 4,333,824 - Psest_4150 0.55 +0.7 4,333,835 + Psest_4150 0.56 -0.8 4,333,835 + Psest_4150 0.56 -0.3 4,333,835 + Psest_4150 0.56 +0.0 4,333,835 + Psest_4150 0.56 -1.8 4,333,835 + Psest_4150 0.56 -1.1 4,333,835 + Psest_4150 0.56 +1.7 4,333,836 - Psest_4150 0.56 -2.4 4,333,836 - Psest_4150 0.56 +0.6 4,334,039 + Psest_4150 0.73 -0.4 4,334,039 + Psest_4150 0.73 -0.2 4,334,039 + Psest_4150 0.73 -1.3 4,334,039 + Psest_4150 0.73 -0.9 4,334,039 + Psest_4150 0.73 +0.1 4,334,039 + Psest_4150 0.73 +0.0 4,334,039 + Psest_4150 0.73 +0.4 4,334,039 + Psest_4150 0.73 -0.8 4,334,039 + Psest_4150 0.73 +1.0 4,334,039 + Psest_4150 0.73 -0.3 4,334,039 + Psest_4150 0.73 -1.6 4,334,039 + Psest_4150 0.73 -0.3 4,334,039 + Psest_4150 0.73 +0.2 4,334,039 + Psest_4150 0.73 +0.3 4,334,039 + Psest_4150 0.73 +0.2 4,334,039 + Psest_4150 0.73 -1.2 4,334,039 + Psest_4150 0.73 +0.9 4,334,039 + Psest_4150 0.73 -0.6 4,334,040 - Psest_4150 0.73 -0.3 4,334,040 - Psest_4150 0.73 -0.1 4,334,040 - Psest_4150 0.73 -0.6 4,334,040 - Psest_4150 0.73 +2.0 4,334,040 - Psest_4150 0.73 +0.1 4,334,040 - Psest_4150 0.73 -0.4 4,334,040 - Psest_4150 0.73 +0.0 4,334,040 - Psest_4150 0.73 +0.5 4,334,040 - Psest_4150 0.73 -0.6 4,334,040 - Psest_4150 0.73 +1.6 4,334,040 - Psest_4150 0.73 +0.9 4,334,040 - Psest_4150 0.73 +0.8 4,334,040 - Psest_4150 0.73 -0.1 4,334,040 - Psest_4150 0.73 +0.2 4,334,040 - Psest_4150 0.73 +0.5 4,334,040 - Psest_4150 0.73 -1.3 4,334,040 - Psest_4150 0.73 +0.8 4,334,040 - Psest_4150 0.73 -0.1 4,334,094 + Psest_4150 0.78 -0.9 4,334,443 + -0.3 4,334,573 - Psest_4151 0.25 -0.2 4,334,938 + Psest_4151 0.79 -0.7 4,334,938 + Psest_4151 0.79 -0.2 4,334,938 + Psest_4151 0.79 -0.3 4,334,939 - Psest_4151 0.80 -2.2 4,334,939 - Psest_4151 0.80 -0.6 4,335,068 + -1.2 4,335,207 + Psest_4152 0.31 +2.5 4,335,207 + Psest_4152 0.31 +0.9 4,335,207 + Psest_4152 0.31 +0.4 4,335,207 + Psest_4152 0.31 +0.5 4,335,207 + Psest_4152 0.31 -1.1 4,335,207 + Psest_4152 0.31 +0.7 4,335,208 - Psest_4152 0.31 -0.7 4,335,213 + Psest_4152 0.32 -0.1 4,335,213 + Psest_4152 0.32 +1.1 4,335,214 - Psest_4152 0.33 +1.5 4,335,288 - Psest_4152 0.50 -0.1 4,335,346 - Psest_4152 0.63 -1.1 4,335,483 + -0.3 4,335,483 + +3.0 4,335,483 + -0.2 4,335,484 - +0.7 4,335,484 - +0.0 4,335,859 + -1.1 4,335,860 - -1.7 4,335,861 + -0.3 4,335,861 + +1.3 4,335,861 + +0.3 4,335,862 - +0.5 4,335,862 - +1.1 4,335,946 + -1.1 4,335,946 + +0.9 4,335,947 - -0.6 4,336,049 + Psest_4154 0.11 +0.7 4,336,049 + Psest_4154 0.11 -0.7 4,336,049 + Psest_4154 0.11 +0.6 4,336,049 + Psest_4154 0.11 -0.1 4,336,049 + Psest_4154 0.11 +1.5 4,336,050 - Psest_4154 0.11 -2.1
Or see this region's nucleotide sequence