Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0401 and Psest_0402 are separated by 20 nucleotides Psest_0402 and Psest_0403 overlap by 11 nucleotides
Psest_0401: Psest_0401 - isopentenyl-diphosphate delta-isomerase, type 2, at 435,730 to 436,770
_0401
Psest_0402: Psest_0402 - glycosyltransferase, MGT family, at 436,791 to 438,077
_0402
Psest_0403: Psest_0403 - lycopene cyclase, at 438,067 to 439,236
_0403
Position (kb) 436
437
438
439 Strain fitness (log2 ratio) -1
0
1
2 at 436.223 kb on + strand, within Psest_0401 at 436.658 kb on + strand, within Psest_0401 at 436.658 kb on + strand, within Psest_0401 at 436.821 kb on + strand at 436.822 kb on - strand at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.298 kb on + strand, within Psest_0402 at 437.401 kb on + strand, within Psest_0402 at 437.401 kb on + strand, within Psest_0402 at 438.258 kb on + strand, within Psest_0403 at 438.258 kb on + strand, within Psest_0403 at 438.258 kb on + strand, within Psest_0403 at 438.259 kb on - strand, within Psest_0403 at 438.259 kb on - strand, within Psest_0403 at 438.259 kb on - strand, within Psest_0403 at 438.259 kb on - strand, within Psest_0403 at 438.259 kb on - strand, within Psest_0403 at 438.283 kb on + strand, within Psest_0403 at 438.625 kb on + strand, within Psest_0403 at 438.625 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.670 kb on + strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.671 kb on - strand, within Psest_0403 at 438.673 kb on + strand, within Psest_0403 at 438.673 kb on + strand, within Psest_0403 at 438.674 kb on - strand, within Psest_0403 at 438.674 kb on - strand, within Psest_0403 at 438.718 kb on - strand, within Psest_0403 at 438.727 kb on + strand, within Psest_0403 at 438.727 kb on + strand, within Psest_0403 at 438.728 kb on - strand, within Psest_0403 at 438.728 kb on - strand, within Psest_0403 at 438.886 kb on + strand, within Psest_0403 at 438.887 kb on - strand, within Psest_0403 at 438.977 kb on - strand, within Psest_0403
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 436,223 + Psest_0401 0.47 +1.3 436,658 + Psest_0401 0.89 +0.3 436,658 + Psest_0401 0.89 +0.3 436,821 + +0.0 436,822 - +2.3 437,298 + Psest_0402 0.39 -0.2 437,298 + Psest_0402 0.39 -1.0 437,298 + Psest_0402 0.39 -0.7 437,298 + Psest_0402 0.39 +0.3 437,401 + Psest_0402 0.47 +0.0 437,401 + Psest_0402 0.47 +1.3 438,258 + Psest_0403 0.16 +1.3 438,258 + Psest_0403 0.16 +1.5 438,258 + Psest_0403 0.16 -0.7 438,259 - Psest_0403 0.16 -0.5 438,259 - Psest_0403 0.16 +1.9 438,259 - Psest_0403 0.16 +1.3 438,259 - Psest_0403 0.16 -0.7 438,259 - Psest_0403 0.16 -0.7 438,283 + Psest_0403 0.18 +0.0 438,625 + Psest_0403 0.48 -0.8 438,625 + Psest_0403 0.48 -0.4 438,670 + Psest_0403 0.52 +0.2 438,670 + Psest_0403 0.52 -0.4 438,670 + Psest_0403 0.52 +0.0 438,670 + Psest_0403 0.52 +0.4 438,670 + Psest_0403 0.52 -0.4 438,670 + Psest_0403 0.52 -0.7 438,670 + Psest_0403 0.52 -0.7 438,670 + Psest_0403 0.52 +1.3 438,670 + Psest_0403 0.52 -1.2 438,671 - Psest_0403 0.52 -0.8 438,671 - Psest_0403 0.52 +0.8 438,671 - Psest_0403 0.52 -0.2 438,671 - Psest_0403 0.52 -1.2 438,671 - Psest_0403 0.52 +1.9 438,671 - Psest_0403 0.52 +0.9 438,671 - Psest_0403 0.52 +1.6 438,671 - Psest_0403 0.52 -1.5 438,671 - Psest_0403 0.52 +0.3 438,671 - Psest_0403 0.52 +0.8 438,671 - Psest_0403 0.52 +0.3 438,671 - Psest_0403 0.52 +1.3 438,671 - Psest_0403 0.52 +0.3 438,673 + Psest_0403 0.52 -0.7 438,673 + Psest_0403 0.52 +0.3 438,674 - Psest_0403 0.52 +0.6 438,674 - Psest_0403 0.52 +0.9 438,718 - Psest_0403 0.56 +0.9 438,727 + Psest_0403 0.56 +0.8 438,727 + Psest_0403 0.56 +0.6 438,728 - Psest_0403 0.56 -1.0 438,728 - Psest_0403 0.56 +1.8 438,886 + Psest_0403 0.70 +1.3 438,887 - Psest_0403 0.70 +0.3 438,977 - Psest_0403 0.78 -1.2
Or see this region's nucleotide sequence