Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3563 and Psest_3564 are separated by 8 nucleotides Psest_3564 and Psest_3565 are separated by 45 nucleotides Psest_3565 and Psest_3566 are separated by 1 nucleotides Psest_3566 and Psest_3567 overlap by 1 nucleotides
Psest_3563: Psest_3563 - ABC-type transport system, involved in lipoprotein release, permease component, at 3,738,564 to 3,739,829
_3563
Psest_3564: Psest_3564 - Uncharacterized protein conserved in bacteria, at 3,739,838 to 3,740,350
_3564
Psest_3565: Psest_3565 - hypothetical protein, at 3,740,396 to 3,741,487
_3565
Psest_3566: Psest_3566 - TonB family C-terminal domain, at 3,741,489 to 3,742,202
_3566
Psest_3567: Psest_3567 - Biopolymer transport protein, at 3,742,202 to 3,742,615
_3567
Position (kb)
3740
3741
3742 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3739.566 kb on - strand, within Psest_3563 at 3739.638 kb on + strand, within Psest_3563 at 3739.639 kb on - strand, within Psest_3563 at 3739.639 kb on - strand, within Psest_3563 at 3739.690 kb on - strand, within Psest_3563 at 3739.716 kb on + strand at 3739.716 kb on + strand at 3739.716 kb on + strand at 3739.716 kb on + strand at 3739.717 kb on - strand at 3739.965 kb on + strand, within Psest_3564 at 3739.965 kb on + strand, within Psest_3564 at 3739.965 kb on + strand, within Psest_3564 at 3739.966 kb on - strand, within Psest_3564 at 3740.088 kb on - strand, within Psest_3564 at 3740.089 kb on + strand, within Psest_3564 at 3740.148 kb on - strand, within Psest_3564 at 3740.235 kb on + strand, within Psest_3564 at 3740.237 kb on + strand, within Psest_3564 at 3740.237 kb on + strand, within Psest_3564 at 3740.238 kb on - strand, within Psest_3564 at 3740.238 kb on - strand, within Psest_3564 at 3740.238 kb on - strand, within Psest_3564 at 3740.238 kb on - strand, within Psest_3564 at 3740.330 kb on + strand at 3740.330 kb on + strand at 3740.331 kb on - strand at 3740.331 kb on - strand at 3740.331 kb on - strand at 3740.331 kb on - strand at 3740.349 kb on - strand at 3740.378 kb on + strand at 3740.379 kb on - strand at 3741.067 kb on - strand, within Psest_3565 at 3741.195 kb on - strand, within Psest_3565 at 3741.195 kb on - strand, within Psest_3565
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 3,739,566 - Psest_3563 0.79 -0.2 3,739,638 + Psest_3563 0.85 -0.6 3,739,639 - Psest_3563 0.85 -0.8 3,739,639 - Psest_3563 0.85 -0.6 3,739,690 - Psest_3563 0.89 +1.4 3,739,716 + -0.6 3,739,716 + -0.1 3,739,716 + -1.6 3,739,716 + +0.8 3,739,717 - -0.6 3,739,965 + Psest_3564 0.25 +1.4 3,739,965 + Psest_3564 0.25 +0.4 3,739,965 + Psest_3564 0.25 -0.6 3,739,966 - Psest_3564 0.25 +0.6 3,740,088 - Psest_3564 0.49 -0.2 3,740,089 + Psest_3564 0.49 +0.8 3,740,148 - Psest_3564 0.60 -0.5 3,740,235 + Psest_3564 0.77 +0.5 3,740,237 + Psest_3564 0.78 -0.3 3,740,237 + Psest_3564 0.78 -0.4 3,740,238 - Psest_3564 0.78 +2.4 3,740,238 - Psest_3564 0.78 -0.0 3,740,238 - Psest_3564 0.78 +1.8 3,740,238 - Psest_3564 0.78 +0.9 3,740,330 + +1.0 3,740,330 + -2.4 3,740,331 - +0.4 3,740,331 - +0.9 3,740,331 - -0.8 3,740,331 - -0.0 3,740,349 - +0.1 3,740,378 + +0.4 3,740,379 - +1.1 3,741,067 - Psest_3565 0.61 +0.4 3,741,195 - Psest_3565 0.73 -0.9 3,741,195 - Psest_3565 0.73 -0.6
Or see this region's nucleotide sequence