Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3181 and Psest_3182 overlap by 4 nucleotides Psest_3182 and Psest_3183 overlap by 14 nucleotides Psest_3183 and Psest_3184 overlap by 4 nucleotides
Psest_3181: Psest_3181 - Predicted membrane protein/domain, at 3,353,321 to 3,354,034
_3181
Psest_3182: Psest_3182 - Uncharacterized membrane protein, at 3,354,031 to 3,355,011
_3182
Psest_3183: Psest_3183 - hypothetical protein, at 3,354,998 to 3,356,551
_3183
Psest_3184: Psest_3184 - hypothetical protein, at 3,356,548 to 3,357,720
_3184
Position (kb)
3354
3355
3356
3357 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3354.196 kb on + strand, within Psest_3182 at 3354.340 kb on + strand, within Psest_3182 at 3354.340 kb on + strand, within Psest_3182 at 3354.341 kb on - strand, within Psest_3182 at 3354.341 kb on - strand, within Psest_3182 at 3354.341 kb on - strand, within Psest_3182 at 3354.341 kb on - strand, within Psest_3182 at 3354.368 kb on - strand, within Psest_3182 at 3354.400 kb on + strand, within Psest_3182 at 3354.400 kb on + strand, within Psest_3182 at 3354.401 kb on - strand, within Psest_3182 at 3354.401 kb on - strand, within Psest_3182 at 3354.401 kb on - strand, within Psest_3182 at 3354.401 kb on - strand, within Psest_3182 at 3354.401 kb on - strand, within Psest_3182 at 3354.401 kb on - strand, within Psest_3182 at 3354.421 kb on + strand, within Psest_3182 at 3354.421 kb on + strand, within Psest_3182 at 3354.422 kb on - strand, within Psest_3182 at 3354.422 kb on - strand, within Psest_3182 at 3354.466 kb on + strand, within Psest_3182 at 3354.466 kb on + strand, within Psest_3182 at 3354.467 kb on - strand, within Psest_3182 at 3354.467 kb on - strand, within Psest_3182 at 3354.467 kb on - strand, within Psest_3182 at 3354.467 kb on - strand, within Psest_3182 at 3354.467 kb on - strand, within Psest_3182 at 3354.539 kb on - strand, within Psest_3182 at 3354.541 kb on + strand, within Psest_3182 at 3354.541 kb on + strand, within Psest_3182 at 3354.541 kb on + strand, within Psest_3182 at 3354.541 kb on + strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.542 kb on - strand, within Psest_3182 at 3354.836 kb on + strand, within Psest_3182 at 3354.836 kb on + strand, within Psest_3182 at 3354.836 kb on + strand, within Psest_3182 at 3354.836 kb on + strand, within Psest_3182 at 3354.836 kb on + strand, within Psest_3182 at 3354.837 kb on - strand, within Psest_3182 at 3354.837 kb on - strand, within Psest_3182 at 3354.837 kb on - strand, within Psest_3182 at 3354.837 kb on - strand, within Psest_3182 at 3354.932 kb on - strand at 3354.932 kb on - strand at 3354.932 kb on - strand at 3354.932 kb on - strand at 3354.938 kb on + strand at 3354.938 kb on + strand at 3354.938 kb on + strand at 3354.938 kb on + strand at 3354.938 kb on + strand at 3354.938 kb on + strand at 3354.938 kb on + strand at 3354.939 kb on - strand at 3354.939 kb on - strand at 3354.939 kb on - strand at 3354.939 kb on - strand at 3354.939 kb on - strand at 3354.939 kb on - strand at 3354.939 kb on - strand at 3354.939 kb on - strand at 3354.970 kb on + strand at 3354.970 kb on + strand at 3354.970 kb on + strand at 3355.176 kb on + strand, within Psest_3183 at 3355.177 kb on - strand, within Psest_3183 at 3355.206 kb on - strand, within Psest_3183 at 3355.206 kb on - strand, within Psest_3183 at 3355.206 kb on - strand, within Psest_3183 at 3355.226 kb on - strand, within Psest_3183 at 3355.512 kb on - strand, within Psest_3183 at 3355.600 kb on - strand, within Psest_3183 at 3355.600 kb on - strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.646 kb on + strand, within Psest_3183 at 3355.646 kb on + strand, within Psest_3183 at 3355.647 kb on - strand, within Psest_3183 at 3356.167 kb on - strand, within Psest_3183 at 3356.167 kb on - strand, within Psest_3183 at 3356.248 kb on + strand, within Psest_3183 at 3356.309 kb on + strand, within Psest_3183 at 3356.466 kb on - strand at 3356.639 kb on - strand at 3356.706 kb on - strand, within Psest_3184 at 3357.034 kb on + strand, within Psest_3184 at 3357.035 kb on - strand, within Psest_3184 at 3357.227 kb on - strand, within Psest_3184 at 3357.250 kb on + strand, within Psest_3184 at 3357.250 kb on + strand, within Psest_3184 at 3357.251 kb on - strand, within Psest_3184 at 3357.326 kb on - strand, within Psest_3184 at 3357.362 kb on + strand, within Psest_3184 at 3357.362 kb on + strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.449 kb on + strand, within Psest_3184 at 3357.450 kb on - strand, within Psest_3184
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 3,354,196 + Psest_3182 0.17 -0.2 3,354,340 + Psest_3182 0.31 -2.2 3,354,340 + Psest_3182 0.31 -2.4 3,354,341 - Psest_3182 0.32 +0.9 3,354,341 - Psest_3182 0.32 +0.9 3,354,341 - Psest_3182 0.32 +0.2 3,354,341 - Psest_3182 0.32 -0.1 3,354,368 - Psest_3182 0.34 +0.1 3,354,400 + Psest_3182 0.38 -1.1 3,354,400 + Psest_3182 0.38 -1.2 3,354,401 - Psest_3182 0.38 +0.2 3,354,401 - Psest_3182 0.38 -0.1 3,354,401 - Psest_3182 0.38 -1.4 3,354,401 - Psest_3182 0.38 -1.7 3,354,401 - Psest_3182 0.38 -3.0 3,354,401 - Psest_3182 0.38 +0.1 3,354,421 + Psest_3182 0.40 -0.5 3,354,421 + Psest_3182 0.40 -1.9 3,354,422 - Psest_3182 0.40 +1.2 3,354,422 - Psest_3182 0.40 -1.4 3,354,466 + Psest_3182 0.44 +0.9 3,354,466 + Psest_3182 0.44 -1.3 3,354,467 - Psest_3182 0.44 -1.1 3,354,467 - Psest_3182 0.44 +0.4 3,354,467 - Psest_3182 0.44 -0.3 3,354,467 - Psest_3182 0.44 -0.7 3,354,467 - Psest_3182 0.44 +0.4 3,354,539 - Psest_3182 0.52 -1.5 3,354,541 + Psest_3182 0.52 -2.1 3,354,541 + Psest_3182 0.52 +0.3 3,354,541 + Psest_3182 0.52 -0.7 3,354,541 + Psest_3182 0.52 +0.7 3,354,542 - Psest_3182 0.52 +0.5 3,354,542 - Psest_3182 0.52 -0.2 3,354,542 - Psest_3182 0.52 -0.3 3,354,542 - Psest_3182 0.52 +0.6 3,354,542 - Psest_3182 0.52 +0.4 3,354,542 - Psest_3182 0.52 +1.0 3,354,542 - Psest_3182 0.52 +0.0 3,354,542 - Psest_3182 0.52 +0.1 3,354,542 - Psest_3182 0.52 -0.1 3,354,542 - Psest_3182 0.52 -0.5 3,354,542 - Psest_3182 0.52 -0.1 3,354,542 - Psest_3182 0.52 -1.3 3,354,542 - Psest_3182 0.52 -2.2 3,354,542 - Psest_3182 0.52 -1.8 3,354,542 - Psest_3182 0.52 +1.2 3,354,542 - Psest_3182 0.52 +0.4 3,354,542 - Psest_3182 0.52 -1.6 3,354,542 - Psest_3182 0.52 -2.3 3,354,836 + Psest_3182 0.82 +0.5 3,354,836 + Psest_3182 0.82 +0.0 3,354,836 + Psest_3182 0.82 -1.7 3,354,836 + Psest_3182 0.82 -1.7 3,354,836 + Psest_3182 0.82 -1.3 3,354,837 - Psest_3182 0.82 +0.3 3,354,837 - Psest_3182 0.82 -1.3 3,354,837 - Psest_3182 0.82 +0.4 3,354,837 - Psest_3182 0.82 -1.3 3,354,932 - +0.2 3,354,932 - +0.8 3,354,932 - +0.5 3,354,932 - -0.8 3,354,938 + -0.1 3,354,938 + -1.5 3,354,938 + -1.2 3,354,938 + -1.6 3,354,938 + +0.5 3,354,938 + -1.3 3,354,938 + -1.1 3,354,939 - -0.3 3,354,939 - +0.4 3,354,939 - -0.4 3,354,939 - +0.9 3,354,939 - -0.6 3,354,939 - +0.3 3,354,939 - -0.3 3,354,939 - -1.5 3,354,970 + -1.5 3,354,970 + -0.1 3,354,970 + -0.8 3,355,176 + Psest_3183 0.11 -2.5 3,355,177 - Psest_3183 0.12 -0.2 3,355,206 - Psest_3183 0.13 -0.7 3,355,206 - Psest_3183 0.13 +0.1 3,355,206 - Psest_3183 0.13 -0.5 3,355,226 - Psest_3183 0.15 -0.7 3,355,512 - Psest_3183 0.33 +0.7 3,355,600 - Psest_3183 0.39 -0.1 3,355,600 - Psest_3183 0.39 -1.3 3,355,613 + Psest_3183 0.40 -0.7 3,355,613 + Psest_3183 0.40 -2.0 3,355,613 + Psest_3183 0.40 -0.5 3,355,613 + Psest_3183 0.40 -1.3 3,355,613 + Psest_3183 0.40 -2.3 3,355,646 + Psest_3183 0.42 -0.4 3,355,646 + Psest_3183 0.42 -2.1 3,355,647 - Psest_3183 0.42 -1.7 3,356,167 - Psest_3183 0.75 -1.3 3,356,167 - Psest_3183 0.75 +0.2 3,356,248 + Psest_3183 0.80 -0.8 3,356,309 + Psest_3183 0.84 -1.4 3,356,466 - -1.5 3,356,639 - -0.4 3,356,706 - Psest_3184 0.13 -1.9 3,357,034 + Psest_3184 0.41 -0.8 3,357,035 - Psest_3184 0.42 +0.8 3,357,227 - Psest_3184 0.58 -2.2 3,357,250 + Psest_3184 0.60 +0.5 3,357,250 + Psest_3184 0.60 -2.1 3,357,251 - Psest_3184 0.60 +0.2 3,357,326 - Psest_3184 0.66 -0.8 3,357,362 + Psest_3184 0.69 -1.5 3,357,362 + Psest_3184 0.69 +0.5 3,357,363 - Psest_3184 0.69 -0.7 3,357,363 - Psest_3184 0.69 -2.3 3,357,363 - Psest_3184 0.69 -0.4 3,357,363 - Psest_3184 0.69 -0.8 3,357,449 + Psest_3184 0.77 -2.7 3,357,450 - Psest_3184 0.77 -0.6
Or see this region's nucleotide sequence