Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0291 and Psest_0292 are separated by 57 nucleotides Psest_0292 and Psest_0293 are separated by 22 nucleotides Psest_0293 and Psest_0294 overlap by 4 nucleotides
Psest_0291: Psest_0291 - aspartate carbamoyltransferase, at 306,494 to 307,510
_0291
Psest_0292: Psest_0292 - Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase, at 307,568 to 308,080
_0292
Psest_0293: Psest_0293 - RNAse H-fold protein YqgF, at 308,103 to 308,531
_0293
Psest_0294: Psest_0294 - Putative transcriptional regulator, at 308,528 to 309,097
_0294
Position (kb) 307
308
309 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 306.595 kb on - strand at 306.595 kb on - strand at 306.595 kb on - strand at 306.732 kb on + strand, within Psest_0291 at 306.732 kb on + strand, within Psest_0291 at 306.741 kb on + strand, within Psest_0291 at 307.482 kb on - strand at 307.545 kb on + strand at 307.545 kb on + strand at 307.557 kb on + strand at 307.667 kb on + strand, within Psest_0292 at 307.667 kb on + strand, within Psest_0292 at 307.667 kb on + strand, within Psest_0292 at 307.668 kb on - strand, within Psest_0292 at 307.668 kb on - strand, within Psest_0292 at 307.668 kb on - strand, within Psest_0292 at 308.022 kb on + strand, within Psest_0292 at 308.607 kb on + strand, within Psest_0294 at 309.006 kb on + strand, within Psest_0294 at 309.006 kb on + strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294 at 309.007 kb on - strand, within Psest_0294
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 306,595 - -0.2 306,595 - -0.6 306,595 - -0.2 306,732 + Psest_0291 0.23 +0.5 306,732 + Psest_0291 0.23 +2.9 306,741 + Psest_0291 0.24 -1.2 307,482 - -0.6 307,545 + -0.9 307,545 + -0.6 307,557 + -2.2 307,667 + Psest_0292 0.19 -2.2 307,667 + Psest_0292 0.19 -1.9 307,667 + Psest_0292 0.19 +0.1 307,668 - Psest_0292 0.19 -0.3 307,668 - Psest_0292 0.19 -0.5 307,668 - Psest_0292 0.19 +0.0 308,022 + Psest_0292 0.88 -0.8 308,607 + Psest_0294 0.14 -0.1 309,006 + Psest_0294 0.84 -1.0 309,006 + Psest_0294 0.84 -2.0 309,007 - Psest_0294 0.84 +1.1 309,007 - Psest_0294 0.84 -1.4 309,007 - Psest_0294 0.84 -0.1 309,007 - Psest_0294 0.84 +0.7 309,007 - Psest_0294 0.84 -0.0 309,007 - Psest_0294 0.84 +0.1 309,007 - Psest_0294 0.84 -0.2 309,007 - Psest_0294 0.84 +0.4
Or see this region's nucleotide sequence