Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2928

Experiment: LB 30C timecourse1 timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2926 and Psest_2927 are separated by 2 nucleotidesPsest_2927 and Psest_2928 are separated by 3 nucleotidesPsest_2928 and Psest_2929 are separated by 6 nucleotidesPsest_2929 and Psest_2930 are separated by 64 nucleotides Psest_2926: Psest_2926 - TIGR03440 family protein, at 3,119,949 to 3,121,244 _2926 Psest_2927: Psest_2927 - probable methyltransferase, at 3,121,247 to 3,122,209 _2927 Psest_2928: Psest_2928 - Subtilisin-like serine proteases, at 3,122,213 to 3,123,991 _2928 Psest_2929: Psest_2929 - Transcriptional regulators, at 3,123,998 to 3,124,471 _2929 Psest_2930: Psest_2930 - asparagine synthase (glutamine-hydrolyzing), at 3,124,536 to 3,126,419 _2930 Position (kb) 3122 3123 3124Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3121.364 kb on + strand, within Psest_2927at 3121.365 kb on - strand, within Psest_2927at 3121.415 kb on + strand, within Psest_2927at 3121.415 kb on + strand, within Psest_2927at 3121.415 kb on + strand, within Psest_2927at 3121.418 kb on + strand, within Psest_2927at 3121.418 kb on + strand, within Psest_2927at 3121.418 kb on + strand, within Psest_2927at 3121.418 kb on + strand, within Psest_2927at 3121.418 kb on + strand, within Psest_2927at 3121.418 kb on + strand, within Psest_2927at 3121.418 kb on + strand, within Psest_2927at 3121.418 kb on + strand, within Psest_2927at 3121.419 kb on - strand, within Psest_2927at 3121.419 kb on - strand, within Psest_2927at 3121.419 kb on - strand, within Psest_2927at 3121.419 kb on - strand, within Psest_2927at 3121.419 kb on - strand, within Psest_2927at 3121.419 kb on - strand, within Psest_2927at 3121.419 kb on - strand, within Psest_2927at 3121.566 kb on - strand, within Psest_2927at 3121.566 kb on - strand, within Psest_2927at 3121.863 kb on - strand, within Psest_2927at 3121.863 kb on - strand, within Psest_2927at 3121.973 kb on + strand, within Psest_2927at 3122.093 kb on + strand, within Psest_2927at 3122.094 kb on - strand, within Psest_2927at 3122.099 kb on + strand, within Psest_2927at 3122.100 kb on - strand, within Psest_2927at 3122.100 kb on - strand, within Psest_2927at 3122.100 kb on - strand, within Psest_2927at 3122.100 kb on - strand, within Psest_2927at 3122.100 kb on - strand, within Psest_2927at 3122.100 kb on - strand, within Psest_2927at 3122.100 kb on - strand, within Psest_2927at 3122.100 kb on - strand, within Psest_2927at 3122.192 kb on + strandat 3122.193 kb on - strandat 3122.271 kb on - strandat 3122.271 kb on - strandat 3122.271 kb on - strandat 3122.272 kb on + strandat 3122.272 kb on + strandat 3122.272 kb on + strandat 3122.272 kb on + strandat 3122.272 kb on + strandat 3122.272 kb on + strandat 3122.272 kb on + strandat 3122.272 kb on + strandat 3122.272 kb on + strandat 3122.272 kb on + strandat 3122.272 kb on + strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.273 kb on - strandat 3122.402 kb on + strand, within Psest_2928at 3122.402 kb on + strand, within Psest_2928at 3122.403 kb on - strand, within Psest_2928at 3122.484 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.615 kb on + strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.616 kb on - strand, within Psest_2928at 3122.690 kb on + strand, within Psest_2928at 3122.691 kb on - strand, within Psest_2928at 3122.732 kb on + strand, within Psest_2928at 3122.933 kb on + strand, within Psest_2928at 3122.934 kb on - strand, within Psest_2928at 3122.934 kb on - strand, within Psest_2928at 3122.934 kb on - strand, within Psest_2928at 3123.041 kb on + strand, within Psest_2928at 3123.041 kb on + strand, within Psest_2928at 3123.041 kb on + strand, within Psest_2928at 3123.393 kb on - strand, within Psest_2928at 3123.523 kb on + strand, within Psest_2928at 3123.717 kb on - strand, within Psest_2928at 3123.990 kb on - strandat 3124.495 kb on - strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.646 kb on + strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.647 kb on - strandat 3124.657 kb on + strandat 3124.658 kb on - strandat 3124.658 kb on - strandat 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.881 kb on + strand, within Psest_2930at 3124.882 kb on - strand, within Psest_2930at 3124.882 kb on - strand, within Psest_2930at 3124.882 kb on - strand, within Psest_2930at 3124.882 kb on - strand, within Psest_2930

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1
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3,121,364 + Psest_2927 0.12 +0.7
3,121,365 - Psest_2927 0.12 -0.2
3,121,415 + Psest_2927 0.17 -0.3
3,121,415 + Psest_2927 0.17 -0.8
3,121,415 + Psest_2927 0.17 +0.7
3,121,418 + Psest_2927 0.18 +0.2
3,121,418 + Psest_2927 0.18 -0.8
3,121,418 + Psest_2927 0.18 +0.8
3,121,418 + Psest_2927 0.18 +0.6
3,121,418 + Psest_2927 0.18 +1.6
3,121,418 + Psest_2927 0.18 -0.6
3,121,418 + Psest_2927 0.18 +0.4
3,121,418 + Psest_2927 0.18 -0.3
3,121,419 - Psest_2927 0.18 -0.2
3,121,419 - Psest_2927 0.18 +1.5
3,121,419 - Psest_2927 0.18 +1.2
3,121,419 - Psest_2927 0.18 -0.6
3,121,419 - Psest_2927 0.18 -0.2
3,121,419 - Psest_2927 0.18 +1.4
3,121,419 - Psest_2927 0.18 +0.4
3,121,566 - Psest_2927 0.33 -0.8
3,121,566 - Psest_2927 0.33 -1.6
3,121,863 - Psest_2927 0.64 +1.1
3,121,863 - Psest_2927 0.64 +2.6
3,121,973 + Psest_2927 0.75 +1.6
3,122,093 + Psest_2927 0.88 +0.8
3,122,094 - Psest_2927 0.88 +1.3
3,122,099 + Psest_2927 0.88 -0.2
3,122,100 - Psest_2927 0.89 +0.0
3,122,100 - Psest_2927 0.89 -1.0
3,122,100 - Psest_2927 0.89 +1.1
3,122,100 - Psest_2927 0.89 -0.6
3,122,100 - Psest_2927 0.89 +0.2
3,122,100 - Psest_2927 0.89 +0.1
3,122,100 - Psest_2927 0.89 +1.4
3,122,100 - Psest_2927 0.89 -0.1
3,122,192 + -0.5
3,122,193 - +1.8
3,122,271 - -1.4
3,122,271 - +2.4
3,122,271 - +0.4
3,122,272 + -0.2
3,122,272 + +0.6
3,122,272 + -0.8
3,122,272 + +1.6
3,122,272 + +0.6
3,122,272 + +0.4
3,122,272 + -1.6
3,122,272 + +0.4
3,122,272 + -0.2
3,122,272 + -1.6
3,122,272 + -0.0
3,122,273 - -1.9
3,122,273 - +0.1
3,122,273 - -1.8
3,122,273 - -1.8
3,122,273 - -0.0
3,122,273 - -0.8
3,122,273 - +0.1
3,122,273 - -0.2
3,122,273 - -1.6
3,122,273 - -0.8
3,122,273 - +1.4
3,122,273 - +1.1
3,122,273 - -0.8
3,122,273 - -0.3
3,122,273 - +0.4
3,122,402 + Psest_2928 0.11 +0.9
3,122,402 + Psest_2928 0.11 -0.8
3,122,403 - Psest_2928 0.11 +0.1
3,122,484 + Psest_2928 0.15 +0.9
3,122,615 + Psest_2928 0.23 +2.2
3,122,615 + Psest_2928 0.23 -0.2
3,122,615 + Psest_2928 0.23 +0.4
3,122,615 + Psest_2928 0.23 -0.2
3,122,615 + Psest_2928 0.23 -0.5
3,122,615 + Psest_2928 0.23 +0.6
3,122,615 + Psest_2928 0.23 -0.2
3,122,615 + Psest_2928 0.23 +0.4
3,122,615 + Psest_2928 0.23 -0.6
3,122,615 + Psest_2928 0.23 -0.1
3,122,615 + Psest_2928 0.23 -0.0
3,122,615 + Psest_2928 0.23 +0.6
3,122,615 + Psest_2928 0.23 +3.0
3,122,615 + Psest_2928 0.23 -1.9
3,122,616 - Psest_2928 0.23 +0.5
3,122,616 - Psest_2928 0.23 -0.1
3,122,616 - Psest_2928 0.23 -0.6
3,122,616 - Psest_2928 0.23 +1.4
3,122,616 - Psest_2928 0.23 +1.5
3,122,616 - Psest_2928 0.23 +1.2
3,122,616 - Psest_2928 0.23 +1.4
3,122,616 - Psest_2928 0.23 +1.4
3,122,616 - Psest_2928 0.23 -1.2
3,122,616 - Psest_2928 0.23 +1.0
3,122,616 - Psest_2928 0.23 -1.2
3,122,616 - Psest_2928 0.23 -1.9
3,122,616 - Psest_2928 0.23 +1.9
3,122,616 - Psest_2928 0.23 +0.1
3,122,616 - Psest_2928 0.23 +1.2
3,122,690 + Psest_2928 0.27 +3.0
3,122,691 - Psest_2928 0.27 +1.2
3,122,732 + Psest_2928 0.29 -0.5
3,122,933 + Psest_2928 0.40 -0.0
3,122,934 - Psest_2928 0.41 +0.9
3,122,934 - Psest_2928 0.41 +0.8
3,122,934 - Psest_2928 0.41 +0.7
3,123,041 + Psest_2928 0.47 +1.4
3,123,041 + Psest_2928 0.47 -0.2
3,123,041 + Psest_2928 0.47 +0.4
3,123,393 - Psest_2928 0.66 -0.6
3,123,523 + Psest_2928 0.74 +0.3
3,123,717 - Psest_2928 0.85 -0.8
3,123,990 - +0.5
3,124,495 - -0.3
3,124,646 + -0.9
3,124,646 + +0.4
3,124,646 + +0.8
3,124,646 + +0.5
3,124,646 + -0.1
3,124,646 + +1.6
3,124,646 + +0.5
3,124,646 + -0.8
3,124,646 + -1.0
3,124,646 + -3.2
3,124,646 + +3.0
3,124,646 + -0.1
3,124,646 + +0.8
3,124,647 - +0.3
3,124,647 - +0.0
3,124,647 - +0.0
3,124,647 - -0.4
3,124,647 - +3.0
3,124,647 - -0.4
3,124,647 - +0.9
3,124,647 - +2.0
3,124,647 - -0.6
3,124,647 - +0.4
3,124,647 - +1.2
3,124,647 - -0.6
3,124,647 - +0.8
3,124,647 - +0.4
3,124,657 + -0.3
3,124,658 - +0.4
3,124,658 - -0.2
3,124,881 + Psest_2930 0.18 +0.3
3,124,881 + Psest_2930 0.18 +1.6
3,124,881 + Psest_2930 0.18 +0.6
3,124,881 + Psest_2930 0.18 +0.7
3,124,881 + Psest_2930 0.18 -0.0
3,124,881 + Psest_2930 0.18 +0.2
3,124,881 + Psest_2930 0.18 -0.3
3,124,882 - Psest_2930 0.18 +0.1
3,124,882 - Psest_2930 0.18 +0.2
3,124,882 - Psest_2930 0.18 +0.1
3,124,882 - Psest_2930 0.18 -0.6

Or see this region's nucleotide sequence