Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2763 and Psest_2764 overlap by 22 nucleotides Psest_2764 and Psest_2765 are separated by 86 nucleotides
Psest_2763: Psest_2763 - Cellobiose phosphorylase, at 2,951,266 to 2,959,797
_2763
Psest_2764: Psest_2764 - hypothetical protein, at 2,959,776 to 2,959,889
_2764
Psest_2765: Psest_2765 - Collagenase and related proteases, at 2,959,976 to 2,961,976
_2765
Position (kb)
2959
2960 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2959.258 kb on + strand at 2959.259 kb on - strand at 2959.259 kb on - strand at 2959.303 kb on + strand at 2959.304 kb on - strand at 2959.429 kb on + strand at 2959.429 kb on + strand at 2959.429 kb on + strand at 2959.445 kb on - strand at 2959.466 kb on - strand at 2959.507 kb on + strand at 2959.507 kb on + strand at 2959.508 kb on - strand at 2959.795 kb on + strand at 2959.795 kb on + strand at 2959.796 kb on - strand at 2959.822 kb on + strand, within Psest_2764 at 2959.870 kb on + strand, within Psest_2764 at 2959.937 kb on + strand at 2960.069 kb on + strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.070 kb on - strand at 2960.240 kb on + strand, within Psest_2765 at 2960.241 kb on - strand, within Psest_2765 at 2960.241 kb on - strand, within Psest_2765 at 2960.709 kb on - strand, within Psest_2765 at 2960.709 kb on - strand, within Psest_2765 at 2960.723 kb on + strand, within Psest_2765 at 2960.723 kb on + strand, within Psest_2765 at 2960.724 kb on - strand, within Psest_2765 at 2960.724 kb on - strand, within Psest_2765 at 2960.724 kb on - strand, within Psest_2765 at 2960.724 kb on - strand, within Psest_2765 at 2960.744 kb on + strand, within Psest_2765 at 2960.744 kb on + strand, within Psest_2765 at 2960.745 kb on - strand, within Psest_2765 at 2960.747 kb on + strand, within Psest_2765 at 2960.871 kb on - strand, within Psest_2765
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 2,959,258 + -0.6 2,959,259 - +0.2 2,959,259 - -0.2 2,959,303 + -2.6 2,959,304 - +0.5 2,959,429 + +0.4 2,959,429 + -1.5 2,959,429 + +1.5 2,959,445 - +0.8 2,959,466 - +0.8 2,959,507 + -0.2 2,959,507 + +0.9 2,959,508 - +0.1 2,959,795 + -1.6 2,959,795 + -1.3 2,959,796 - +2.4 2,959,822 + Psest_2764 0.40 -0.7 2,959,870 + Psest_2764 0.82 -0.6 2,959,937 + +0.0 2,960,069 + +2.4 2,960,070 - -0.0 2,960,070 - +0.6 2,960,070 - +0.8 2,960,070 - -2.9 2,960,070 - -1.8 2,960,070 - +1.8 2,960,070 - -1.8 2,960,070 - +0.7 2,960,070 - -0.1 2,960,240 + Psest_2765 0.13 -0.4 2,960,241 - Psest_2765 0.13 +0.4 2,960,241 - Psest_2765 0.13 +0.4 2,960,709 - Psest_2765 0.37 +1.4 2,960,709 - Psest_2765 0.37 -1.8 2,960,723 + Psest_2765 0.37 -0.3 2,960,723 + Psest_2765 0.37 -0.6 2,960,724 - Psest_2765 0.37 -0.6 2,960,724 - Psest_2765 0.37 +0.4 2,960,724 - Psest_2765 0.37 -1.9 2,960,724 - Psest_2765 0.37 -0.6 2,960,744 + Psest_2765 0.38 -0.9 2,960,744 + Psest_2765 0.38 -1.6 2,960,745 - Psest_2765 0.38 -0.6 2,960,747 + Psest_2765 0.39 -0.3 2,960,871 - Psest_2765 0.45 -0.2
Or see this region's nucleotide sequence