Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2616 and Psest_2617 are separated by 1 nucleotides Psest_2617 and Psest_2618 are separated by 10 nucleotides Psest_2618 and Psest_2619 overlap by 4 nucleotides
Psest_2616: Psest_2616 - Tfp pilus assembly protein PilF, at 2,798,607 to 2,799,650
_2616
Psest_2617: Psest_2617 - Flp pilus assembly protein TadC, at 2,799,652 to 2,800,620
_2617
Psest_2618: Psest_2618 - Flp pilus assembly protein TadB, at 2,800,631 to 2,801,617
_2618
Psest_2619: Psest_2619 - Flp pilus assembly protein, ATPase CpaF, at 2,801,614 to 2,803,038
_2619
Position (kb)
2800
2801
2802 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2799.818 kb on + strand, within Psest_2617 at 2800.067 kb on - strand, within Psest_2617 at 2800.067 kb on - strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.142 kb on + strand, within Psest_2617 at 2800.143 kb on - strand, within Psest_2617 at 2800.143 kb on - strand, within Psest_2617 at 2800.287 kb on - strand, within Psest_2617 at 2800.613 kb on + strand at 2800.613 kb on + strand at 2800.613 kb on + strand at 2800.614 kb on - strand at 2800.614 kb on - strand at 2800.743 kb on + strand, within Psest_2618 at 2800.744 kb on - strand, within Psest_2618 at 2800.838 kb on + strand, within Psest_2618 at 2801.013 kb on + strand, within Psest_2618 at 2801.084 kb on + strand, within Psest_2618 at 2801.084 kb on + strand, within Psest_2618 at 2801.329 kb on - strand, within Psest_2618 at 2801.421 kb on + strand, within Psest_2618 at 2801.422 kb on - strand, within Psest_2618 at 2801.422 kb on - strand, within Psest_2618 at 2801.595 kb on + strand at 2801.595 kb on + strand at 2801.595 kb on + strand at 2801.595 kb on + strand at 2801.596 kb on - strand at 2801.596 kb on - strand at 2801.724 kb on - strand at 2802.058 kb on + strand, within Psest_2619 at 2802.058 kb on + strand, within Psest_2619 at 2802.058 kb on + strand, within Psest_2619 at 2802.059 kb on - strand, within Psest_2619 at 2802.067 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 2,799,818 + Psest_2617 0.17 -0.3 2,800,067 - Psest_2617 0.43 -0.4 2,800,067 - Psest_2617 0.43 +0.1 2,800,142 + Psest_2617 0.51 +0.9 2,800,142 + Psest_2617 0.51 -0.0 2,800,142 + Psest_2617 0.51 -0.2 2,800,142 + Psest_2617 0.51 -0.3 2,800,142 + Psest_2617 0.51 -0.0 2,800,142 + Psest_2617 0.51 +0.2 2,800,142 + Psest_2617 0.51 -0.9 2,800,143 - Psest_2617 0.51 +0.2 2,800,143 - Psest_2617 0.51 +0.5 2,800,287 - Psest_2617 0.66 -0.5 2,800,613 + +0.1 2,800,613 + -0.4 2,800,613 + +0.6 2,800,614 - -0.6 2,800,614 - -0.7 2,800,743 + Psest_2618 0.11 -1.2 2,800,744 - Psest_2618 0.11 -0.1 2,800,838 + Psest_2618 0.21 -1.2 2,801,013 + Psest_2618 0.39 +0.6 2,801,084 + Psest_2618 0.46 -0.3 2,801,084 + Psest_2618 0.46 -0.2 2,801,329 - Psest_2618 0.71 +0.3 2,801,421 + Psest_2618 0.80 +1.4 2,801,422 - Psest_2618 0.80 -1.4 2,801,422 - Psest_2618 0.80 -1.9 2,801,595 + -0.8 2,801,595 + +0.8 2,801,595 + +0.5 2,801,595 + +0.0 2,801,596 - -1.4 2,801,596 - +2.1 2,801,724 - +0.6 2,802,058 + Psest_2619 0.31 +1.9 2,802,058 + Psest_2619 0.31 -0.9 2,802,058 + Psest_2619 0.31 +0.1 2,802,059 - Psest_2619 0.31 +1.4 2,802,067 - Psest_2619 0.32 +0.2 2,802,068 - Psest_2619 0.32 +0.3 2,802,068 - Psest_2619 0.32 -0.2 2,802,068 - Psest_2619 0.32 +1.1 2,802,617 + Psest_2619 0.70 +2.6 2,802,617 + Psest_2619 0.70 +1.4 2,802,617 + Psest_2619 0.70 -2.9
Or see this region's nucleotide sequence