Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2454

Experiment: LB 30C timecourse1 timepoint 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2452 and Psest_2453 are separated by 1 nucleotidesPsest_2453 and Psest_2454 are separated by 78 nucleotidesPsest_2454 and Psest_2455 are separated by 41 nucleotidesPsest_2455 and Psest_2456 are separated by 119 nucleotides Psest_2452: Psest_2452 - Cytochrome c bacterial./Doubled CXXCH motif (Paired_CXXCH_1)., at 2,620,879 to 2,622,465 _2452 Psest_2453: Psest_2453 - Thiosulfate reductase cytochrome B subunit (membrane anchoring protein), at 2,622,467 to 2,623,063 _2453 Psest_2454: Psest_2454 - Rhodanese-related sulfurtransferase, at 2,623,142 to 2,623,690 _2454 Psest_2455: Psest_2455 - Acyl-CoA thioesterase, at 2,623,732 to 2,624,529 _2455 Psest_2456: Psest_2456 - Transglutaminase-like enzymes, putative cysteine proteases, at 2,624,649 to 2,626,649 _2456 Position (kb) 2623 2624Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2622.142 kb on + strand, within Psest_2452at 2622.199 kb on + strand, within Psest_2452at 2622.252 kb on + strand, within Psest_2452at 2622.482 kb on + strandat 2622.483 kb on - strandat 2622.483 kb on - strandat 2622.732 kb on - strand, within Psest_2453at 2622.735 kb on - strand, within Psest_2453at 2622.735 kb on - strand, within Psest_2453at 2622.818 kb on + strand, within Psest_2453at 2622.818 kb on + strand, within Psest_2453at 2622.819 kb on - strand, within Psest_2453at 2622.819 kb on - strand, within Psest_2453at 2622.819 kb on - strand, within Psest_2453at 2622.819 kb on - strand, within Psest_2453at 2622.819 kb on - strand, within Psest_2453at 2622.872 kb on + strand, within Psest_2453at 2622.872 kb on + strand, within Psest_2453at 2622.872 kb on + strand, within Psest_2453at 2622.873 kb on - strand, within Psest_2453at 2622.873 kb on - strand, within Psest_2453at 2622.944 kb on - strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.987 kb on + strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.988 kb on - strand, within Psest_2453at 2622.989 kb on + strand, within Psest_2453at 2622.990 kb on - strand, within Psest_2453at 2623.083 kb on - strandat 2623.096 kb on + strandat 2623.096 kb on + strandat 2623.097 kb on - strandat 2623.098 kb on + strandat 2623.116 kb on + strandat 2623.116 kb on + strandat 2623.117 kb on - strandat 2623.229 kb on + strand, within Psest_2454at 2623.338 kb on - strand, within Psest_2454at 2623.547 kb on + strand, within Psest_2454at 2623.547 kb on + strand, within Psest_2454at 2623.671 kb on - strandat 2623.847 kb on + strand, within Psest_2455at 2623.847 kb on + strand, within Psest_2455at 2624.055 kb on + strand, within Psest_2455at 2624.055 kb on + strand, within Psest_2455at 2624.055 kb on + strand, within Psest_2455at 2624.055 kb on + strand, within Psest_2455at 2624.055 kb on + strand, within Psest_2455at 2624.056 kb on - strand, within Psest_2455at 2624.056 kb on - strand, within Psest_2455at 2624.056 kb on - strand, within Psest_2455at 2624.110 kb on - strand, within Psest_2455at 2624.123 kb on - strand, within Psest_2455at 2624.131 kb on + strand, within Psest_2455at 2624.132 kb on - strand, within Psest_2455at 2624.132 kb on - strand, within Psest_2455at 2624.135 kb on + strand, within Psest_2455at 2624.135 kb on + strand, within Psest_2455at 2624.135 kb on + strand, within Psest_2455at 2624.136 kb on - strand, within Psest_2455at 2624.136 kb on - strand, within Psest_2455at 2624.136 kb on - strand, within Psest_2455at 2624.500 kb on + strandat 2624.552 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1
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2,622,142 + Psest_2452 0.80 +2.9
2,622,199 + Psest_2452 0.83 +0.2
2,622,252 + Psest_2452 0.87 -0.9
2,622,482 + -0.1
2,622,483 - +2.1
2,622,483 - -1.1
2,622,732 - Psest_2453 0.44 +0.8
2,622,735 - Psest_2453 0.45 -0.1
2,622,735 - Psest_2453 0.45 -0.1
2,622,818 + Psest_2453 0.59 +0.3
2,622,818 + Psest_2453 0.59 -1.0
2,622,819 - Psest_2453 0.59 +1.0
2,622,819 - Psest_2453 0.59 +1.2
2,622,819 - Psest_2453 0.59 -0.6
2,622,819 - Psest_2453 0.59 -1.2
2,622,819 - Psest_2453 0.59 +0.2
2,622,872 + Psest_2453 0.68 +1.8
2,622,872 + Psest_2453 0.68 +1.3
2,622,872 + Psest_2453 0.68 -2.4
2,622,873 - Psest_2453 0.68 +2.9
2,622,873 - Psest_2453 0.68 -0.5
2,622,944 - Psest_2453 0.80 +0.2
2,622,987 + Psest_2453 0.87 -0.5
2,622,987 + Psest_2453 0.87 -0.5
2,622,987 + Psest_2453 0.87 +1.0
2,622,987 + Psest_2453 0.87 +0.3
2,622,987 + Psest_2453 0.87 -0.6
2,622,987 + Psest_2453 0.87 -0.4
2,622,987 + Psest_2453 0.87 +1.0
2,622,987 + Psest_2453 0.87 -0.2
2,622,987 + Psest_2453 0.87 +0.3
2,622,987 + Psest_2453 0.87 -0.6
2,622,987 + Psest_2453 0.87 -0.7
2,622,987 + Psest_2453 0.87 +0.5
2,622,988 - Psest_2453 0.87 +2.7
2,622,988 - Psest_2453 0.87 -0.3
2,622,988 - Psest_2453 0.87 +1.6
2,622,988 - Psest_2453 0.87 -0.7
2,622,988 - Psest_2453 0.87 +1.7
2,622,988 - Psest_2453 0.87 +0.9
2,622,988 - Psest_2453 0.87 -0.7
2,622,988 - Psest_2453 0.87 +0.8
2,622,988 - Psest_2453 0.87 +0.8
2,622,988 - Psest_2453 0.87 +0.3
2,622,988 - Psest_2453 0.87 -2.2
2,622,988 - Psest_2453 0.87 -0.5
2,622,988 - Psest_2453 0.87 -0.8
2,622,988 - Psest_2453 0.87 -0.4
2,622,988 - Psest_2453 0.87 -0.2
2,622,988 - Psest_2453 0.87 -2.4
2,622,988 - Psest_2453 0.87 +2.9
2,622,988 - Psest_2453 0.87 -0.8
2,622,988 - Psest_2453 0.87 -0.4
2,622,988 - Psest_2453 0.87 +0.2
2,622,988 - Psest_2453 0.87 +0.1
2,622,988 - Psest_2453 0.87 +0.2
2,622,989 + Psest_2453 0.87 -1.0
2,622,990 - Psest_2453 0.88 +0.7
2,623,083 - -2.2
2,623,096 + -1.2
2,623,096 + +0.1
2,623,097 - +0.3
2,623,098 + +1.3
2,623,116 + +0.1
2,623,116 + +0.1
2,623,117 - -1.8
2,623,229 + Psest_2454 0.16 +0.3
2,623,338 - Psest_2454 0.36 -1.0
2,623,547 + Psest_2454 0.74 +0.0
2,623,547 + Psest_2454 0.74 -0.1
2,623,671 - +0.3
2,623,847 + Psest_2455 0.14 -1.4
2,623,847 + Psest_2455 0.14 +0.7
2,624,055 + Psest_2455 0.40 +0.2
2,624,055 + Psest_2455 0.40 -0.6
2,624,055 + Psest_2455 0.40 +0.4
2,624,055 + Psest_2455 0.40 +0.1
2,624,055 + Psest_2455 0.40 +1.2
2,624,056 - Psest_2455 0.41 +2.1
2,624,056 - Psest_2455 0.41 -0.7
2,624,056 - Psest_2455 0.41 +0.0
2,624,110 - Psest_2455 0.47 +0.1
2,624,123 - Psest_2455 0.49 -1.0
2,624,131 + Psest_2455 0.50 +0.9
2,624,132 - Psest_2455 0.50 +1.9
2,624,132 - Psest_2455 0.50 -2.1
2,624,135 + Psest_2455 0.51 -0.1
2,624,135 + Psest_2455 0.51 +0.5
2,624,135 + Psest_2455 0.51 +0.4
2,624,136 - Psest_2455 0.51 -0.2
2,624,136 - Psest_2455 0.51 -3.2
2,624,136 - Psest_2455 0.51 -1.1
2,624,500 + +1.1
2,624,552 - -1.0

Or see this region's nucleotide sequence