Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2413 and Psest_2414 overlap by 1 nucleotides Psest_2414 and Psest_2415 are separated by 11 nucleotides Psest_2415 and Psest_2416 are separated by 67 nucleotides
Psest_2413: Psest_2413 - Periplasmic protein TonB, links inner and outer membranes, at 2,573,155 to 2,573,943
_2413
Psest_2414: Psest_2414 - TolR protein, at 2,573,943 to 2,574,407
_2414
Psest_2415: Psest_2415 - TolQ protein, at 2,574,419 to 2,575,132
_2415
Psest_2416: Psest_2416 - 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase), at 2,575,200 to 2,577,116
_2416
Position (kb)
2574
2575
2576 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2574.070 kb on + strand, within Psest_2414 at 2574.071 kb on - strand, within Psest_2414 at 2574.187 kb on + strand, within Psest_2414 at 2574.187 kb on + strand, within Psest_2414 at 2574.188 kb on - strand, within Psest_2414 at 2574.188 kb on - strand, within Psest_2414 at 2574.350 kb on - strand, within Psest_2414 at 2574.357 kb on + strand, within Psest_2414 at 2574.357 kb on + strand, within Psest_2414 at 2574.357 kb on + strand, within Psest_2414 at 2574.358 kb on - strand, within Psest_2414 at 2574.358 kb on - strand, within Psest_2414 at 2574.499 kb on - strand, within Psest_2415 at 2574.544 kb on - strand, within Psest_2415 at 2574.544 kb on - strand, within Psest_2415 at 2574.700 kb on + strand, within Psest_2415 at 2574.702 kb on + strand, within Psest_2415 at 2574.702 kb on + strand, within Psest_2415 at 2574.702 kb on + strand, within Psest_2415 at 2574.703 kb on - strand, within Psest_2415 at 2574.703 kb on - strand, within Psest_2415 at 2574.703 kb on - strand, within Psest_2415 at 2574.780 kb on + strand, within Psest_2415 at 2575.023 kb on + strand, within Psest_2415 at 2575.166 kb on + strand at 2575.243 kb on + strand at 2575.243 kb on + strand at 2575.243 kb on + strand at 2575.243 kb on + strand at 2575.243 kb on + strand at 2575.244 kb on - strand at 2575.244 kb on - strand at 2575.244 kb on - strand at 2575.249 kb on + strand at 2575.249 kb on + strand at 2575.249 kb on + strand at 2575.420 kb on + strand, within Psest_2416 at 2575.447 kb on + strand, within Psest_2416 at 2575.447 kb on + strand, within Psest_2416 at 2575.447 kb on + strand, within Psest_2416 at 2575.448 kb on - strand, within Psest_2416 at 2575.448 kb on - strand, within Psest_2416 at 2575.448 kb on - strand, within Psest_2416 at 2575.480 kb on + strand, within Psest_2416 at 2575.529 kb on - strand, within Psest_2416 at 2575.771 kb on + strand, within Psest_2416 at 2575.772 kb on - strand, within Psest_2416 at 2575.810 kb on + strand, within Psest_2416 at 2575.810 kb on + strand, within Psest_2416 at 2575.811 kb on - strand, within Psest_2416 at 2575.811 kb on - strand, within Psest_2416 at 2575.811 kb on - strand, within Psest_2416 at 2576.020 kb on + strand, within Psest_2416
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 2,574,070 + Psest_2414 0.27 -1.4 2,574,071 - Psest_2414 0.28 +1.4 2,574,187 + Psest_2414 0.52 +2.7 2,574,187 + Psest_2414 0.52 -2.2 2,574,188 - Psest_2414 0.53 -0.2 2,574,188 - Psest_2414 0.53 +0.4 2,574,350 - Psest_2414 0.88 -1.2 2,574,357 + Psest_2414 0.89 -0.6 2,574,357 + Psest_2414 0.89 -0.6 2,574,357 + Psest_2414 0.89 +0.4 2,574,358 - Psest_2414 0.89 -1.0 2,574,358 - Psest_2414 0.89 +0.6 2,574,499 - Psest_2415 0.11 +0.1 2,574,544 - Psest_2415 0.18 +0.6 2,574,544 - Psest_2415 0.18 +0.8 2,574,700 + Psest_2415 0.39 -0.4 2,574,702 + Psest_2415 0.40 +0.4 2,574,702 + Psest_2415 0.40 +1.6 2,574,702 + Psest_2415 0.40 -0.1 2,574,703 - Psest_2415 0.40 -0.9 2,574,703 - Psest_2415 0.40 -0.6 2,574,703 - Psest_2415 0.40 +0.9 2,574,780 + Psest_2415 0.51 -1.6 2,575,023 + Psest_2415 0.85 -0.2 2,575,166 + +0.4 2,575,243 + -0.2 2,575,243 + -0.6 2,575,243 + +2.4 2,575,243 + -1.0 2,575,243 + -0.3 2,575,244 - +0.2 2,575,244 - -0.7 2,575,244 - +0.4 2,575,249 + +0.1 2,575,249 + +0.8 2,575,249 + +1.4 2,575,420 + Psest_2416 0.11 +0.7 2,575,447 + Psest_2416 0.13 -0.6 2,575,447 + Psest_2416 0.13 -0.2 2,575,447 + Psest_2416 0.13 +0.9 2,575,448 - Psest_2416 0.13 -1.2 2,575,448 - Psest_2416 0.13 -0.6 2,575,448 - Psest_2416 0.13 +1.8 2,575,480 + Psest_2416 0.15 +2.5 2,575,529 - Psest_2416 0.17 -1.0 2,575,771 + Psest_2416 0.30 +0.4 2,575,772 - Psest_2416 0.30 -2.2 2,575,810 + Psest_2416 0.32 +1.8 2,575,810 + Psest_2416 0.32 +0.4 2,575,811 - Psest_2416 0.32 +0.4 2,575,811 - Psest_2416 0.32 +1.1 2,575,811 - Psest_2416 0.32 +1.4 2,576,020 + Psest_2416 0.43 +0.7
Or see this region's nucleotide sequence