Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2264 and Psest_2265 overlap by 4 nucleotides Psest_2265 and Psest_2266 are separated by 91 nucleotides Psest_2266 and Psest_2267 are separated by 50 nucleotides
Psest_2264: Psest_2264 - RND family efflux transporter, MFP subunit, at 2,412,223 to 2,413,710
_2264
Psest_2265: Psest_2265 - Outer membrane protein, at 2,413,707 to 2,414,960
_2265
Psest_2266: Psest_2266 - hypothetical protein, at 2,415,052 to 2,415,396
_2266
Psest_2267: Psest_2267 - PAS domain S-box, at 2,415,447 to 2,417,144
_2267
Position (kb)
2413
2414
2415 Strain fitness (log2 ratio)
-2
-1
0
1 at 2412.823 kb on - strand, within Psest_2264 at 2412.906 kb on + strand, within Psest_2264 at 2412.906 kb on + strand, within Psest_2264 at 2412.906 kb on + strand, within Psest_2264 at 2413.202 kb on + strand, within Psest_2264 at 2413.203 kb on - strand, within Psest_2264 at 2413.289 kb on + strand, within Psest_2264 at 2413.290 kb on - strand, within Psest_2264 at 2413.290 kb on - strand, within Psest_2264 at 2413.290 kb on - strand, within Psest_2264 at 2413.350 kb on - strand, within Psest_2264 at 2413.350 kb on - strand, within Psest_2264 at 2413.350 kb on - strand, within Psest_2264 at 2413.350 kb on - strand, within Psest_2264 at 2413.357 kb on + strand, within Psest_2264 at 2413.565 kb on + strand at 2413.566 kb on - strand at 2413.698 kb on + strand at 2413.698 kb on + strand at 2413.698 kb on + strand at 2413.698 kb on + strand at 2413.699 kb on - strand at 2414.105 kb on - strand, within Psest_2265 at 2414.126 kb on - strand, within Psest_2265 at 2414.209 kb on + strand, within Psest_2265 at 2414.441 kb on + strand, within Psest_2265 at 2414.614 kb on - strand, within Psest_2265 at 2414.614 kb on - strand, within Psest_2265 at 2414.936 kb on - strand at 2414.943 kb on + strand at 2414.943 kb on + strand at 2415.158 kb on - strand, within Psest_2266 at 2415.228 kb on + strand, within Psest_2266 at 2415.228 kb on + strand, within Psest_2266 at 2415.228 kb on + strand, within Psest_2266 at 2415.229 kb on - strand, within Psest_2266 at 2415.229 kb on - strand, within Psest_2266 at 2415.229 kb on - strand, within Psest_2266 at 2415.387 kb on - strand at 2415.679 kb on + strand, within Psest_2267 at 2415.912 kb on + strand, within Psest_2267 at 2415.912 kb on + strand, within Psest_2267 at 2415.912 kb on + strand, within Psest_2267
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 2,412,823 - Psest_2264 0.40 -0.2 2,412,906 + Psest_2264 0.46 -0.2 2,412,906 + Psest_2264 0.46 +0.7 2,412,906 + Psest_2264 0.46 -2.3 2,413,202 + Psest_2264 0.66 -0.8 2,413,203 - Psest_2264 0.66 +1.0 2,413,289 + Psest_2264 0.72 -0.1 2,413,290 - Psest_2264 0.72 +0.2 2,413,290 - Psest_2264 0.72 -1.2 2,413,290 - Psest_2264 0.72 +1.3 2,413,350 - Psest_2264 0.76 +0.0 2,413,350 - Psest_2264 0.76 -0.8 2,413,350 - Psest_2264 0.76 -0.7 2,413,350 - Psest_2264 0.76 -0.1 2,413,357 + Psest_2264 0.76 +0.2 2,413,565 + -0.9 2,413,566 - -0.3 2,413,698 + -0.5 2,413,698 + +0.0 2,413,698 + +0.5 2,413,698 + -1.9 2,413,699 - +0.5 2,414,105 - Psest_2265 0.32 -0.7 2,414,126 - Psest_2265 0.33 -1.0 2,414,209 + Psest_2265 0.40 -1.1 2,414,441 + Psest_2265 0.59 -0.5 2,414,614 - Psest_2265 0.72 +0.3 2,414,614 - Psest_2265 0.72 -1.0 2,414,936 - +0.6 2,414,943 + +1.0 2,414,943 + -1.0 2,415,158 - Psest_2266 0.31 +1.3 2,415,228 + Psest_2266 0.51 +1.1 2,415,228 + Psest_2266 0.51 -0.4 2,415,228 + Psest_2266 0.51 -1.1 2,415,229 - Psest_2266 0.51 +0.0 2,415,229 - Psest_2266 0.51 +0.9 2,415,229 - Psest_2266 0.51 -0.9 2,415,387 - +0.1 2,415,679 + Psest_2267 0.14 +0.0 2,415,912 + Psest_2267 0.27 -0.8 2,415,912 + Psest_2267 0.27 +0.8 2,415,912 + Psest_2267 0.27 +0.1
Or see this region's nucleotide sequence