Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2265

Experiment: LB 30C timecourse1 timepoint 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2264 and Psest_2265 overlap by 4 nucleotidesPsest_2265 and Psest_2266 are separated by 91 nucleotidesPsest_2266 and Psest_2267 are separated by 50 nucleotides Psest_2264: Psest_2264 - RND family efflux transporter, MFP subunit, at 2,412,223 to 2,413,710 _2264 Psest_2265: Psest_2265 - Outer membrane protein, at 2,413,707 to 2,414,960 _2265 Psest_2266: Psest_2266 - hypothetical protein, at 2,415,052 to 2,415,396 _2266 Psest_2267: Psest_2267 - PAS domain S-box, at 2,415,447 to 2,417,144 _2267 Position (kb) 2413 2414 2415Strain fitness (log2 ratio) -2 -1 0 1at 2412.823 kb on - strand, within Psest_2264at 2412.906 kb on + strand, within Psest_2264at 2412.906 kb on + strand, within Psest_2264at 2412.906 kb on + strand, within Psest_2264at 2413.202 kb on + strand, within Psest_2264at 2413.203 kb on - strand, within Psest_2264at 2413.289 kb on + strand, within Psest_2264at 2413.290 kb on - strand, within Psest_2264at 2413.290 kb on - strand, within Psest_2264at 2413.290 kb on - strand, within Psest_2264at 2413.350 kb on - strand, within Psest_2264at 2413.350 kb on - strand, within Psest_2264at 2413.350 kb on - strand, within Psest_2264at 2413.350 kb on - strand, within Psest_2264at 2413.357 kb on + strand, within Psest_2264at 2413.565 kb on + strandat 2413.566 kb on - strandat 2413.698 kb on + strandat 2413.698 kb on + strandat 2413.698 kb on + strandat 2413.698 kb on + strandat 2413.699 kb on - strandat 2414.105 kb on - strand, within Psest_2265at 2414.126 kb on - strand, within Psest_2265at 2414.209 kb on + strand, within Psest_2265at 2414.441 kb on + strand, within Psest_2265at 2414.614 kb on - strand, within Psest_2265at 2414.614 kb on - strand, within Psest_2265at 2414.936 kb on - strandat 2414.943 kb on + strandat 2414.943 kb on + strandat 2415.158 kb on - strand, within Psest_2266at 2415.228 kb on + strand, within Psest_2266at 2415.228 kb on + strand, within Psest_2266at 2415.228 kb on + strand, within Psest_2266at 2415.229 kb on - strand, within Psest_2266at 2415.229 kb on - strand, within Psest_2266at 2415.229 kb on - strand, within Psest_2266at 2415.387 kb on - strandat 2415.679 kb on + strand, within Psest_2267at 2415.912 kb on + strand, within Psest_2267at 2415.912 kb on + strand, within Psest_2267at 2415.912 kb on + strand, within Psest_2267

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1
remove
2,412,823 - Psest_2264 0.40 -0.2
2,412,906 + Psest_2264 0.46 -0.2
2,412,906 + Psest_2264 0.46 +0.7
2,412,906 + Psest_2264 0.46 -2.3
2,413,202 + Psest_2264 0.66 -0.8
2,413,203 - Psest_2264 0.66 +1.0
2,413,289 + Psest_2264 0.72 -0.1
2,413,290 - Psest_2264 0.72 +0.2
2,413,290 - Psest_2264 0.72 -1.2
2,413,290 - Psest_2264 0.72 +1.3
2,413,350 - Psest_2264 0.76 +0.0
2,413,350 - Psest_2264 0.76 -0.8
2,413,350 - Psest_2264 0.76 -0.7
2,413,350 - Psest_2264 0.76 -0.1
2,413,357 + Psest_2264 0.76 +0.2
2,413,565 + -0.9
2,413,566 - -0.3
2,413,698 + -0.5
2,413,698 + +0.0
2,413,698 + +0.5
2,413,698 + -1.9
2,413,699 - +0.5
2,414,105 - Psest_2265 0.32 -0.7
2,414,126 - Psest_2265 0.33 -1.0
2,414,209 + Psest_2265 0.40 -1.1
2,414,441 + Psest_2265 0.59 -0.5
2,414,614 - Psest_2265 0.72 +0.3
2,414,614 - Psest_2265 0.72 -1.0
2,414,936 - +0.6
2,414,943 + +1.0
2,414,943 + -1.0
2,415,158 - Psest_2266 0.31 +1.3
2,415,228 + Psest_2266 0.51 +1.1
2,415,228 + Psest_2266 0.51 -0.4
2,415,228 + Psest_2266 0.51 -1.1
2,415,229 - Psest_2266 0.51 +0.0
2,415,229 - Psest_2266 0.51 +0.9
2,415,229 - Psest_2266 0.51 -0.9
2,415,387 - +0.1
2,415,679 + Psest_2267 0.14 +0.0
2,415,912 + Psest_2267 0.27 -0.8
2,415,912 + Psest_2267 0.27 +0.8
2,415,912 + Psest_2267 0.27 +0.1

Or see this region's nucleotide sequence