Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2088
Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB 30C timecourse1 timepoint 1 |
---|---|---|---|---|---|
remove | |||||
2,215,446 | + | Psest_2086 | 0.31 | -0.4 | |
2,215,516 | + | Psest_2086 | 0.38 | -0.3 | |
2,215,517 | - | Psest_2086 | 0.39 | -1.5 | |
2,215,628 | + | Psest_2086 | 0.50 | -0.5 | |
2,215,659 | + | Psest_2086 | 0.53 | +0.2 | |
2,215,661 | + | Psest_2086 | 0.53 | +1.1 | |
2,215,661 | + | Psest_2086 | 0.53 | +0.2 | |
2,215,661 | + | Psest_2086 | 0.53 | +0.8 | |
2,215,661 | + | Psest_2086 | 0.53 | -0.0 | |
2,215,661 | + | Psest_2086 | 0.53 | -0.4 | |
2,215,661 | + | Psest_2086 | 0.53 | -0.8 | |
2,215,662 | - | Psest_2086 | 0.53 | +1.2 | |
2,215,662 | - | Psest_2086 | 0.53 | -0.1 | |
2,215,662 | - | Psest_2086 | 0.53 | -0.2 | |
2,215,675 | + | Psest_2086 | 0.54 | -0.5 | |
2,215,916 | + | Psest_2086 | 0.79 | -1.1 | |
2,215,916 | + | Psest_2086 | 0.79 | -0.1 | |
2,216,113 | + | -0.3 | |||
2,216,113 | + | +2.5 | |||
2,216,114 | - | -1.8 | |||
2,216,138 | + | +1.5 | |||
2,216,139 | - | -0.9 | |||
2,216,139 | - | +0.2 | |||
2,216,317 | - | Psest_2087 | 0.79 | -0.8 | |
2,216,330 | - | -0.5 | |||
2,216,330 | - | -0.6 | |||
2,216,449 | + | Psest_2088 | 0.10 | +1.4 | |
2,216,449 | + | Psest_2088 | 0.10 | -1.0 | |
2,216,449 | + | Psest_2088 | 0.10 | -1.0 |
Or see this region's nucleotide sequence