Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1836 and Psest_1837 are separated by 19 nucleotides Psest_1837 and Psest_1838 are separated by 131 nucleotides
Psest_1836: Psest_1836 - Uncharacterized conserved protein, at 1,938,112 to 1,939,299
_1836
Psest_1837: Psest_1837 - Endoglucanase, at 1,939,319 to 1,940,398
_1837
Psest_1838: Psest_1838 - capsular exopolysaccharide family, at 1,940,530 to 1,942,746
_1838
Position (kb)
1939
1940
1941 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1939.438 kb on - strand, within Psest_1837 at 1939.438 kb on - strand, within Psest_1837 at 1939.498 kb on - strand, within Psest_1837 at 1939.620 kb on - strand, within Psest_1837 at 1939.663 kb on - strand, within Psest_1837 at 1939.663 kb on - strand, within Psest_1837 at 1939.663 kb on - strand, within Psest_1837 at 1939.663 kb on - strand, within Psest_1837 at 1939.663 kb on - strand, within Psest_1837 at 1939.663 kb on - strand, within Psest_1837 at 1939.663 kb on - strand, within Psest_1837 at 1939.705 kb on - strand, within Psest_1837 at 1939.957 kb on - strand, within Psest_1837 at 1939.957 kb on - strand, within Psest_1837 at 1939.957 kb on - strand, within Psest_1837 at 1939.957 kb on - strand, within Psest_1837 at 1939.966 kb on - strand, within Psest_1837 at 1940.011 kb on - strand, within Psest_1837 at 1940.011 kb on - strand, within Psest_1837 at 1940.011 kb on - strand, within Psest_1837 at 1940.011 kb on - strand, within Psest_1837 at 1940.011 kb on - strand, within Psest_1837 at 1940.011 kb on - strand, within Psest_1837 at 1940.011 kb on - strand, within Psest_1837 at 1940.175 kb on + strand, within Psest_1837 at 1940.176 kb on - strand, within Psest_1837 at 1940.176 kb on - strand, within Psest_1837 at 1940.206 kb on - strand, within Psest_1837 at 1940.206 kb on - strand, within Psest_1837 at 1940.206 kb on - strand, within Psest_1837 at 1940.410 kb on - strand at 1940.410 kb on - strand at 1940.453 kb on + strand at 1940.454 kb on - strand at 1940.454 kb on - strand at 1940.456 kb on + strand at 1940.457 kb on - strand at 1940.562 kb on - strand at 1940.562 kb on - strand at 1940.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 1,939,438 - Psest_1837 0.11 -2.7 1,939,438 - Psest_1837 0.11 -1.3 1,939,498 - Psest_1837 0.17 +0.4 1,939,620 - Psest_1837 0.28 -0.7 1,939,663 - Psest_1837 0.32 -3.1 1,939,663 - Psest_1837 0.32 -1.3 1,939,663 - Psest_1837 0.32 -0.4 1,939,663 - Psest_1837 0.32 -0.7 1,939,663 - Psest_1837 0.32 -3.2 1,939,663 - Psest_1837 0.32 -0.5 1,939,663 - Psest_1837 0.32 +0.4 1,939,705 - Psest_1837 0.36 -0.9 1,939,957 - Psest_1837 0.59 -0.1 1,939,957 - Psest_1837 0.59 -0.2 1,939,957 - Psest_1837 0.59 -0.8 1,939,957 - Psest_1837 0.59 +1.0 1,939,966 - Psest_1837 0.60 +0.5 1,940,011 - Psest_1837 0.64 +0.2 1,940,011 - Psest_1837 0.64 -1.1 1,940,011 - Psest_1837 0.64 -0.7 1,940,011 - Psest_1837 0.64 -3.4 1,940,011 - Psest_1837 0.64 -1.3 1,940,011 - Psest_1837 0.64 -1.7 1,940,011 - Psest_1837 0.64 -1.0 1,940,175 + Psest_1837 0.79 -2.3 1,940,176 - Psest_1837 0.79 -1.3 1,940,176 - Psest_1837 0.79 -1.8 1,940,206 - Psest_1837 0.82 -1.2 1,940,206 - Psest_1837 0.82 -0.7 1,940,206 - Psest_1837 0.82 -0.4 1,940,410 - +0.2 1,940,410 - +0.3 1,940,453 + +0.5 1,940,454 - -2.7 1,940,454 - +0.2 1,940,456 + -1.6 1,940,457 - -0.1 1,940,562 - -1.1 1,940,562 - -2.0 1,940,562 - +1.1
Or see this region's nucleotide sequence