Experiment: LB 30C timecourse1 timepoint 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1304 and Psest_1305 are separated by 320 nucleotides Psest_1305 and Psest_1306 overlap by 4 nucleotides Psest_1306 and Psest_1307 are separated by 95 nucleotides
Psest_1304: Psest_1304 - Nucleotidyltransferase/DNA polymerase involved in DNA repair, at 1,405,870 to 1,406,934
_1304
Psest_1305: Psest_1305 - Heat shock protein, at 1,407,255 to 1,407,656
_1305
Psest_1306: Psest_1306 - hypothetical protein, at 1,407,653 to 1,408,093
_1306
Psest_1307: Psest_1307 - Dienelactone hydrolase and related enzymes, at 1,408,189 to 1,408,995
_1307
Position (kb)
1407
1408
1409 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1406.721 kb on + strand, within Psest_1304 at 1406.722 kb on - strand, within Psest_1304 at 1406.819 kb on - strand, within Psest_1304 at 1406.939 kb on + strand at 1406.940 kb on - strand at 1407.068 kb on + strand at 1407.069 kb on - strand at 1407.093 kb on + strand at 1407.157 kb on - strand at 1407.182 kb on + strand at 1407.182 kb on + strand at 1407.183 kb on - strand at 1407.183 kb on - strand at 1407.183 kb on - strand at 1407.183 kb on - strand at 1407.256 kb on + strand at 1407.256 kb on + strand at 1407.256 kb on + strand at 1407.256 kb on + strand at 1407.256 kb on + strand at 1407.256 kb on + strand at 1407.257 kb on - strand at 1407.257 kb on - strand at 1407.257 kb on - strand at 1407.257 kb on - strand at 1407.257 kb on - strand at 1407.279 kb on + strand at 1407.304 kb on - strand, within Psest_1305 at 1407.454 kb on + strand, within Psest_1305 at 1407.490 kb on + strand, within Psest_1305 at 1407.568 kb on + strand, within Psest_1305 at 1407.568 kb on + strand, within Psest_1305 at 1407.569 kb on - strand, within Psest_1305 at 1407.569 kb on - strand, within Psest_1305 at 1407.569 kb on - strand, within Psest_1305 at 1407.679 kb on + strand at 1407.811 kb on + strand, within Psest_1306 at 1407.909 kb on - strand, within Psest_1306 at 1407.935 kb on + strand, within Psest_1306 at 1407.935 kb on + strand, within Psest_1306 at 1408.114 kb on + strand at 1408.115 kb on - strand at 1408.115 kb on - strand at 1408.368 kb on - strand, within Psest_1307 at 1408.584 kb on - strand, within Psest_1307 at 1408.584 kb on - strand, within Psest_1307 at 1408.742 kb on + strand, within Psest_1307 at 1408.743 kb on - strand, within Psest_1307 at 1408.880 kb on + strand, within Psest_1307 at 1408.880 kb on + strand, within Psest_1307 at 1408.881 kb on - strand, within Psest_1307 at 1408.881 kb on - strand, within Psest_1307 at 1408.884 kb on - strand, within Psest_1307 at 1408.917 kb on - strand at 1409.045 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C timecourse1 timepoint 1 remove 1,406,721 + Psest_1304 0.80 -1.3 1,406,722 - Psest_1304 0.80 +0.4 1,406,819 - Psest_1304 0.89 -0.3 1,406,939 + -0.5 1,406,940 - -0.9 1,407,068 + -0.0 1,407,069 - -1.4 1,407,093 + -0.3 1,407,157 - +0.3 1,407,182 + +1.0 1,407,182 + -0.2 1,407,183 - -0.8 1,407,183 - +0.2 1,407,183 - +0.3 1,407,183 - +0.5 1,407,256 + +0.4 1,407,256 + +1.1 1,407,256 + +1.1 1,407,256 + -0.8 1,407,256 + +1.7 1,407,256 + +0.1 1,407,257 - -0.2 1,407,257 - -0.1 1,407,257 - +1.3 1,407,257 - +0.1 1,407,257 - +0.4 1,407,279 + +0.8 1,407,304 - Psest_1305 0.12 -1.3 1,407,454 + Psest_1305 0.50 -0.3 1,407,490 + Psest_1305 0.58 +1.0 1,407,568 + Psest_1305 0.78 +0.1 1,407,568 + Psest_1305 0.78 +1.6 1,407,569 - Psest_1305 0.78 +0.5 1,407,569 - Psest_1305 0.78 +0.8 1,407,569 - Psest_1305 0.78 -0.8 1,407,679 + +0.3 1,407,811 + Psest_1306 0.36 -2.5 1,407,909 - Psest_1306 0.58 -2.8 1,407,935 + Psest_1306 0.64 +0.1 1,407,935 + Psest_1306 0.64 -0.7 1,408,114 + +1.6 1,408,115 - -0.1 1,408,115 - +0.8 1,408,368 - Psest_1307 0.22 -0.1 1,408,584 - Psest_1307 0.49 -0.3 1,408,584 - Psest_1307 0.49 +0.4 1,408,742 + Psest_1307 0.69 -2.2 1,408,743 - Psest_1307 0.69 -0.2 1,408,880 + Psest_1307 0.86 -0.1 1,408,880 + Psest_1307 0.86 -1.9 1,408,881 - Psest_1307 0.86 -0.1 1,408,881 - Psest_1307 0.86 -0.0 1,408,884 - Psest_1307 0.86 +0.6 1,408,917 - -1.9 1,409,045 + -0.2
Or see this region's nucleotide sequence