Strain Fitness in Shewanella amazonensis SB2B around Sama_3376

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
4,004,104	+		Sama_3375	0.58	-2.6
4,004,211	+		Sama_3375	0.63	-3.1
4,004,234	+		Sama_3375	0.64	+0.5
4,004,235	-		Sama_3375	0.64	-2.4
4,004,332	+		Sama_3375	0.69	+0.2
4,004,333	-		Sama_3375	0.69	-1.6
4,004,333	-		Sama_3375	0.69	-2.1
4,004,352	+		Sama_3375	0.70	-0.9
4,004,353	-		Sama_3375	0.70	-2.7
4,004,386	+		Sama_3375	0.72	-0.2
4,004,530	+		Sama_3375	0.79	+0.9
4,004,531	-		Sama_3375	0.79	-2.9
4,004,531	-		Sama_3375	0.79	-1.0
4,004,590	+		Sama_3375	0.81	-1.7
4,004,591	-		Sama_3375	0.81	-2.4
4,004,685	+		Sama_3375	0.86	-2.0
4,004,685	+		Sama_3375	0.86	-1.8
4,004,685	+		Sama_3375	0.86	-1.4
4,004,685	+		Sama_3375	0.86	+0.3
4,004,686	-		Sama_3375	0.86	-1.7
4,004,706	-		Sama_3375	0.87	-1.5
4,004,741	+		Sama_3375	0.89	-2.6
4,004,742	-		Sama_3375	0.89	-1.3
4,004,865	-				-2.4
4,004,865	-				-3.1
4,004,865	-				-0.2
4,004,929	+				+0.5
4,004,929	+				-0.5
4,004,929	+				-1.4
4,004,929	+				-2.8
4,004,961	+				-0.3
4,004,962	-				+0.6
4,004,962	-				+0.2
4,004,965	+				-3.0
4,004,965	+				-1.7
4,004,965	+				-1.7
4,004,965	+				-1.7
4,004,966	-				+0.8
4,004,966	-				+0.4
4,004,966	-				-0.1
4,004,966	-				-1.8
4,004,966	-				-0.1
4,004,966	-				-1.6
4,004,966	-				-0.2
4,004,966	-				+0.2
4,004,973	+				+0.3
4,004,983	+				+0.0
4,004,983	+				-0.1
4,004,983	+				+0.5
4,004,984	-				-1.5
4,004,984	-				-2.6
4,004,984	-				+0.0
4,004,984	-				-1.7
4,004,984	-				-0.6
4,004,987	+				-1.4
4,005,011	+				+0.7
4,005,011	+				+0.3
4,005,012	-				+1.1
4,005,186	+		Sama_3376	0.12	-0.5
4,005,187	-		Sama_3376	0.12	-0.3
4,005,187	-		Sama_3376	0.12	-2.8
4,005,187	-		Sama_3376	0.12	-1.5
4,005,187	-		Sama_3376	0.12	-0.0
4,005,194	+		Sama_3376	0.13	+0.2
4,005,194	+		Sama_3376	0.13	+0.4
4,005,194	+		Sama_3376	0.13	-0.5
4,005,195	-		Sama_3376	0.13	-0.5
4,005,346	+		Sama_3376	0.30	-0.1
4,005,346	+		Sama_3376	0.30	-1.5
4,005,346	+		Sama_3376	0.30	-0.1
4,005,346	+		Sama_3376	0.30	+1.0
4,005,346	+		Sama_3376	0.30	-0.3
4,005,346	+		Sama_3376	0.30	-3.1
4,005,347	-		Sama_3376	0.30	-0.6
4,005,347	-		Sama_3376	0.30	-1.2
4,005,347	-		Sama_3376	0.30	-2.0
4,005,347	-		Sama_3376	0.30	+2.4
4,005,347	-		Sama_3376	0.30	-1.5
4,005,347	-		Sama_3376	0.30	-0.5
4,005,363	+		Sama_3376	0.32	+0.4
4,005,364	-		Sama_3376	0.32	+0.9
4,005,378	+		Sama_3376	0.34	-1.7
4,005,378	+		Sama_3376	0.34	+1.0
4,005,378	+		Sama_3376	0.34	-1.1
4,005,378	+		Sama_3376	0.34	-0.1
4,005,378	+		Sama_3376	0.34	+0.2
4,005,379	-		Sama_3376	0.34	+0.9
4,005,379	-		Sama_3376	0.34	-1.0
4,005,379	-		Sama_3376	0.34	-0.1
4,005,379	-		Sama_3376	0.34	-0.5
4,005,379	-		Sama_3376	0.34	+0.5
4,005,379	-		Sama_3376	0.34	+0.4
4,005,379	-		Sama_3376	0.34	-0.8
4,005,379	-		Sama_3376	0.34	+0.8
4,005,431	-		Sama_3376	0.40	-0.8
4,005,505	+		Sama_3376	0.48	+1.3
4,005,506	-		Sama_3376	0.48	-1.7
4,005,506	-		Sama_3376	0.48	-0.4
4,005,512	-		Sama_3376	0.49	-0.6
4,005,602	+		Sama_3376	0.59	+0.7
4,005,602	+		Sama_3376	0.59	+1.3
4,005,602	+		Sama_3376	0.59	-0.1
4,005,603	-		Sama_3376	0.59	-2.5
4,005,603	-		Sama_3376	0.59	-2.4
4,005,603	-		Sama_3376	0.59	-1.2
4,005,603	-		Sama_3376	0.59	+0.7
4,005,603	-		Sama_3376	0.59	+0.1
4,005,607	-		Sama_3376	0.60	-1.5
4,005,620	+		Sama_3376	0.61	-1.2
4,005,629	+		Sama_3376	0.62	-2.0
4,005,630	-		Sama_3376	0.62	+1.2
4,005,638	+		Sama_3376	0.63	-0.1
4,005,638	+		Sama_3376	0.63	+0.9
4,005,638	+		Sama_3376	0.63	-1.1
4,005,639	-		Sama_3376	0.63	+1.3
4,005,639	-		Sama_3376	0.63	+1.0
4,005,639	-		Sama_3376	0.63	-2.1
4,005,647	+		Sama_3376	0.64	-1.4
4,005,647	+		Sama_3376	0.64	+0.3
4,005,647	+		Sama_3376	0.64	-1.8
4,005,647	+		Sama_3376	0.64	+3.0
4,005,647	+		Sama_3376	0.64	-0.4
4,005,648	-		Sama_3376	0.64	+2.1
4,005,648	-		Sama_3376	0.64	-0.7
4,005,648	-		Sama_3376	0.64	-1.2
4,005,648	-		Sama_3376	0.64	-0.8
4,005,648	-		Sama_3376	0.64	-0.1
4,005,660	+		Sama_3376	0.66	-1.1
4,005,660	+		Sama_3376	0.66	+0.2
4,005,660	+		Sama_3376	0.66	-0.4
4,005,661	-		Sama_3376	0.66	+3.0
4,005,661	-		Sama_3376	0.66	-0.2
4,005,687	-		Sama_3376	0.69	+0.0
4,005,739	+		Sama_3376	0.75	+0.3
4,005,739	+		Sama_3376	0.75	-1.7
4,005,739	+		Sama_3376	0.75	+0.5
4,005,740	-		Sama_3376	0.75	+0.7
4,005,740	-		Sama_3376	0.75	-1.2
4,005,740	-		Sama_3376	0.75	+0.3
4,005,813	+		Sama_3376	0.83	-0.6
4,005,813	+		Sama_3376	0.83	+1.2
4,005,813	+		Sama_3376	0.83	-0.4
4,005,813	+		Sama_3376	0.83	-2.5
4,005,813	+		Sama_3376	0.83	+1.4
4,005,813	+		Sama_3376	0.83	+1.3
4,005,813	+		Sama_3376	0.83	+0.9
4,005,813	+		Sama_3376	0.83	-0.1
4,005,814	-		Sama_3376	0.83	-0.5
4,005,814	-		Sama_3376	0.83	+0.4
4,005,814	-		Sama_3376	0.83	-0.1
4,005,814	-		Sama_3376	0.83	+0.1
4,005,814	-		Sama_3376	0.83	-1.1
4,005,814	-		Sama_3376	0.83	-0.8
4,005,839	+		Sama_3376	0.86	+0.9
4,005,840	-		Sama_3376	0.86	+0.6
4,005,840	-		Sama_3376	0.86	-2.2
4,005,840	-		Sama_3376	0.86	-0.1
4,005,894	+				-1.6
4,005,894	+				-2.1
4,005,894	+				+1.0
4,005,894	+				-2.6
4,005,895	-				+0.7
4,005,895	-				+0.7
4,005,963	-				-0.1
4,005,978	-				+0.2
4,006,023	-				-0.5
4,006,040	+				+0.7
4,006,040	+				-0.1
4,006,041	-				+2.1
4,006,041	-				-0.3
4,006,045	+				-0.1
4,006,060	-				-0.7
4,006,069	+				+0.9
4,006,069	-				-3.0
4,006,069	+				-1.3
4,006,069	+				+0.1
4,006,070	-				+0.1
4,006,070	-				-0.9
4,006,075	+				-2.9
4,006,076	-				+1.5
4,006,099	+				-0.1
4,006,100	-				+0.4
4,006,100	-				+0.9
4,006,134	+				+1.3
4,006,134	+				+0.5
4,006,135	-				-1.0
4,006,135	-				-0.6
4,006,135	-				-0.1
4,006,139	+				+0.8
4,006,139	+				-0.5
4,006,139	+				-0.5
4,006,139	+				+0.2
4,006,139	+				+1.1
4,006,139	+				-0.6
4,006,139	+				+1.4
4,006,140	-				-0.9
4,006,140	-				-1.5
4,006,180	+				+0.9
4,006,181	-				+1.3
4,006,222	-				+1.3
4,006,222	-				-2.2
4,006,222	-				-0.4
4,006,235	+				-0.9
4,006,235	+				-2.2
4,006,235	+				+1.0
4,006,235	+				-1.1
4,006,236	-				-0.1
4,006,236	-				+0.4
4,006,236	-				+0.8
4,006,236	-				-1.1
4,006,236	-				-0.5
4,006,432	+		Sama_3377	0.35	+0.5
4,006,432	+		Sama_3377	0.35	-0.5
4,006,432	+		Sama_3377	0.35	+0.0
4,006,433	-		Sama_3377	0.35	-0.2
4,006,433	-		Sama_3377	0.35	+2.3
4,006,433	-		Sama_3377	0.35	+0.5
4,006,433	-		Sama_3377	0.35	-2.7
4,006,499	+		Sama_3377	0.45	+0.5
4,006,499	+		Sama_3377	0.45	-0.1
4,006,499	+		Sama_3377	0.45	-2.0
4,006,500	-		Sama_3377	0.45	-0.1
4,006,500	-		Sama_3377	0.45	+0.7
4,006,500	-		Sama_3377	0.45	-0.6
4,006,525	+		Sama_3377	0.48	-2.1
4,006,525	+		Sama_3377	0.48	-1.3
4,006,525	+		Sama_3377	0.48	-1.3
4,006,525	+		Sama_3377	0.48	-0.3
4,006,526	-		Sama_3377	0.49	-0.8
4,006,526	-		Sama_3377	0.49	-2.1
4,006,526	-		Sama_3377	0.49	+1.0
4,006,526	-		Sama_3377	0.49	-0.5
4,006,526	-		Sama_3377	0.49	-0.6
4,006,526	-		Sama_3377	0.49	-1.8
4,006,529	+		Sama_3377	0.49	-1.4
4,006,529	+		Sama_3377	0.49	-2.1
4,006,529	+		Sama_3377	0.49	-0.9
4,006,530	-		Sama_3377	0.49	+0.3
4,006,530	-		Sama_3377	0.49	-0.8
4,006,602	+		Sama_3377	0.60	-0.5
4,006,602	+		Sama_3377	0.60	-0.1
4,006,602	+		Sama_3377	0.60	+0.1
4,006,639	+		Sama_3377	0.65	+0.3
4,006,639	+		Sama_3377	0.65	+0.5
4,006,640	-		Sama_3377	0.65	+0.5
4,006,640	-		Sama_3377	0.65	+0.5
4,006,671	+		Sama_3377	0.70	+0.0
4,006,671	+		Sama_3377	0.70	+0.5
4,006,671	+		Sama_3377	0.70	+4.4
4,006,672	-		Sama_3377	0.70	-0.4
4,006,672	-		Sama_3377	0.70	-1.2
4,006,672	-		Sama_3377	0.70	-3.3
4,006,672	-		Sama_3377	0.70	-0.8
4,006,672	-		Sama_3377	0.70	+1.5
4,006,673	+		Sama_3377	0.70	+1.0
4,006,680	+		Sama_3377	0.71	-0.6
4,006,680	+		Sama_3377	0.71	+0.2
4,006,681	-		Sama_3377	0.71	+0.3
4,006,681	-		Sama_3377	0.71	-1.5
4,006,791	+		Sama_3377	0.87	-2.1
4,006,791	+		Sama_3377	0.87	-0.5
4,006,791	+		Sama_3377	0.87	+0.4
4,006,791	+		Sama_3377	0.87	-0.5
4,006,792	-		Sama_3377	0.87	-1.0
4,006,792	-		Sama_3377	0.87	+0.1
4,006,936	+				+1.5
4,006,936	+				+0.2
4,006,936	+				-0.2
4,006,936	+				-0.7
4,006,936	+				+0.4
4,006,937	-				+0.0
4,006,937	-				+0.8
4,006,937	-				-1.2
4,006,937	-				-1.4
4,006,937	-				+0.1
4,006,937	-				-1.1
4,006,937	-				-0.2
4,006,937	-				+0.0