Strain Fitness in Shewanella amazonensis SB2B around Sama_3329

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,956,099	+		Sama_3328	0.62	-1.3
3,956,099	+		Sama_3328	0.62	+1.2
3,956,099	+		Sama_3328	0.62	-0.5
3,956,099	+		Sama_3328	0.62	+1.2
3,956,099	+		Sama_3328	0.62	-0.5
3,956,099	+		Sama_3328	0.62	+2.8
3,956,099	+		Sama_3328	0.62	-0.4
3,956,099	+		Sama_3328	0.62	-2.8
3,956,099	+		Sama_3328	0.62	+0.6
3,956,099	+		Sama_3328	0.62	+0.7
3,956,099	+		Sama_3328	0.62	+0.1
3,956,099	+		Sama_3328	0.62	-1.6
3,956,099	+		Sama_3328	0.62	-0.0
3,956,100	-		Sama_3328	0.62	+0.5
3,956,100	-		Sama_3328	0.62	+0.5
3,956,100	-		Sama_3328	0.62	+0.1
3,956,100	-		Sama_3328	0.62	+1.3
3,956,100	-		Sama_3328	0.62	-0.8
3,956,100	-		Sama_3328	0.62	-1.0
3,956,100	-		Sama_3328	0.62	-0.3
3,956,100	-		Sama_3328	0.62	-0.4
3,956,100	-		Sama_3328	0.62	-0.1
3,956,100	-		Sama_3328	0.62	+0.0
3,956,100	-		Sama_3328	0.62	+1.8
3,956,101	+		Sama_3328	0.62	+0.8
3,956,101	+		Sama_3328	0.62	+0.1
3,956,101	+		Sama_3328	0.62	-0.5
3,956,101	+		Sama_3328	0.62	-0.9
3,956,101	+		Sama_3328	0.62	+0.4
3,956,101	+		Sama_3328	0.62	-0.1
3,956,101	+		Sama_3328	0.62	+0.1
3,956,101	+		Sama_3328	0.62	-2.7
3,956,102	-		Sama_3328	0.62	+0.6
3,956,102	-		Sama_3328	0.62	-0.2
3,956,102	-		Sama_3328	0.62	+0.7
3,956,102	-		Sama_3328	0.62	-0.6
3,956,102	-		Sama_3328	0.62	-0.4
3,956,102	-		Sama_3328	0.62	+0.4
3,956,139	+		Sama_3328	0.64	-1.2
3,956,140	-		Sama_3328	0.64	+2.5
3,956,153	+		Sama_3328	0.64	-1.2
3,956,229	-		Sama_3328	0.68	-1.9
3,956,229	-		Sama_3328	0.68	-0.2
3,956,229	-		Sama_3328	0.68	-0.1
3,956,249	+		Sama_3328	0.69	-0.8
3,956,249	+		Sama_3328	0.69	+1.5
3,956,301	-		Sama_3328	0.72	+0.4
3,956,336	-		Sama_3328	0.73	+1.7
3,956,379	+		Sama_3328	0.76	+0.5
3,956,379	+		Sama_3328	0.76	+0.1
3,956,379	+		Sama_3328	0.76	+0.3
3,956,380	-		Sama_3328	0.76	-0.1
3,956,380	-		Sama_3328	0.76	-0.2
3,956,380	-		Sama_3328	0.76	-1.4
3,956,380	-		Sama_3328	0.76	+0.5
3,956,380	-		Sama_3328	0.76	-3.3
3,956,396	-		Sama_3328	0.76	+0.3
3,956,462	+		Sama_3328	0.80	+1.1
3,956,462	+		Sama_3328	0.80	+0.1
3,956,463	-		Sama_3328	0.80	-1.3
3,956,463	-		Sama_3328	0.80	-1.1
3,956,463	-		Sama_3328	0.80	-0.8
3,956,585	-		Sama_3328	0.86	+0.9
3,956,618	+		Sama_3328	0.87	+0.5
3,956,618	+		Sama_3328	0.87	-0.3
3,956,619	-		Sama_3328	0.87	-3.2
3,956,619	-		Sama_3328	0.87	-0.3
3,956,619	-		Sama_3328	0.87	+0.0
3,956,655	+		Sama_3328	0.89	+0.5
3,956,655	+		Sama_3328	0.89	-2.9
3,956,656	-		Sama_3328	0.89	-0.1
3,956,672	-		Sama_3328	0.90	+0.5
3,956,679	+				+0.2
3,956,679	+				+1.1
3,956,679	+				+1.3
3,956,679	+				+0.8
3,956,679	+				-0.7
3,956,679	+				-0.8
3,956,679	+				+1.5
3,956,679	+				-1.2
3,956,679	+				+0.7
3,956,679	+				+0.1
3,956,680	-				-0.1
3,956,680	-				-1.0
3,956,680	-				+0.3
3,956,680	-				-0.3
3,956,680	-				-1.2
3,956,680	-				-0.5
3,956,680	-				+0.4
3,956,680	-				-0.2
3,956,680	-				+0.0
3,956,680	-				-1.3
3,956,680	-				+0.5
3,956,680	-				+1.6
3,956,680	-				-0.5
3,956,727	-				+0.6
3,956,744	+				+0.2
3,956,744	+				-0.2
3,956,744	+				-0.9
3,956,744	+				-0.3
3,956,744	+				+1.9
3,956,744	+				+0.2
3,956,745	-				-1.7
3,956,745	-				+1.2
3,956,745	-				+0.5
3,956,745	-				+0.1
3,956,745	-				-2.2
3,956,745	-				-1.7
3,956,760	+				+0.3
3,956,760	+				-0.3
3,956,760	+				+0.3
3,956,760	+				-1.0
3,956,761	-				+0.5
3,956,761	-				+1.7
3,956,775	-				+0.6
3,956,804	+				+0.2
3,956,804	+				-0.5
3,956,804	+				+0.3
3,956,805	-				+1.3
3,956,805	-				-0.2
3,956,848	+				-0.9
3,956,848	+				+0.6
3,956,849	-				-1.7
3,956,849	-				-1.1
3,956,849	-				-0.4
3,956,852	+				+1.7
3,956,852	+				-0.3
3,956,852	+				+0.2
3,956,852	+				+0.7
3,956,852	+				+1.3
3,956,852	+				-0.3
3,956,853	-				+0.9
3,956,853	-				+1.1
3,956,855	+				+1.1
3,956,855	+				+2.5
3,956,855	+				+1.5
3,956,855	+				-0.6
3,956,855	+				+1.4
3,956,855	+				+0.4
3,956,855	+				-0.5
3,956,855	+				-0.6
3,956,855	+				-0.3
3,956,856	-				-2.0
3,956,856	-				-1.2
3,956,856	-				-0.6
3,956,856	-				-1.0
3,956,856	-				-0.1
3,956,856	-				-0.2
3,956,879	+				-0.2
3,956,879	+				+2.0
3,956,879	+				-1.7
3,956,879	+				-0.2
3,956,879	+				-0.4
3,956,879	+				+1.9
3,956,879	+				+0.7
3,956,879	+				+1.2
3,956,879	+				+0.3
3,956,879	+				-0.8
3,956,880	-				-1.6
3,956,880	-				-0.7
3,956,880	-				+1.3
3,956,880	-				-2.6
3,956,880	-				+0.2
3,956,880	-				-2.7
3,956,880	-				+0.3
3,956,880	-				+0.3
3,956,880	-				-1.0
3,956,881	+				+0.5
3,956,881	+				+0.3
3,956,881	+				-1.8
3,956,881	+				+0.1
3,956,881	+				-1.3
3,956,881	+				-0.2
3,956,881	+				-0.6
3,956,881	+				-0.5
3,956,881	+				+2.3
3,956,881	+				-0.7
3,956,881	+				+0.7
3,956,881	+				-1.6
3,956,881	+				-1.0
3,956,881	+				-0.1
3,956,881	+				-0.1
3,956,881	+				+1.1
3,956,882	-				+0.4
3,956,882	-				+1.2
3,956,882	-				+1.9
3,956,882	-				-0.9
3,956,882	-				-0.0
3,956,882	-				-0.7
3,956,882	-				-1.0
3,956,882	-				-0.3
3,956,882	-				-0.7
3,956,980	-				-0.1
3,956,980	-				-1.1
3,957,003	+				+1.1
3,957,003	+				-1.5
3,957,003	+				-0.3
3,957,003	+				-2.5
3,957,003	+				+0.9
3,957,004	-				+0.6
3,957,004	-				+0.1
3,957,075	+				+0.3
3,957,075	+				-0.2
3,957,075	+				+1.0
3,957,075	+				-0.7
3,957,076	-				+2.4
3,957,130	+		Sama_3329	0.15	-1.0
3,957,131	-		Sama_3329	0.15	+1.3
3,957,153	+		Sama_3329	0.19	+0.8
3,957,153	+		Sama_3329	0.19	-0.5
3,957,153	+		Sama_3329	0.19	+0.0
3,957,153	+		Sama_3329	0.19	+0.9
3,957,154	-		Sama_3329	0.19	-0.6
3,957,187	-		Sama_3329	0.24	-0.5
3,957,187	-		Sama_3329	0.24	-0.9
3,957,199	+		Sama_3329	0.27	-0.6
3,957,199	+		Sama_3329	0.27	-1.1
3,957,199	+		Sama_3329	0.27	-2.5
3,957,200	-		Sama_3329	0.27	+0.6
3,957,218	+		Sama_3329	0.30	+0.6
3,957,218	+		Sama_3329	0.30	+0.4
3,957,218	+		Sama_3329	0.30	+0.3
3,957,218	+		Sama_3329	0.30	-0.0
3,957,218	+		Sama_3329	0.30	+0.2
3,957,219	-		Sama_3329	0.30	+0.4
3,957,219	-		Sama_3329	0.30	-0.8
3,957,219	-		Sama_3329	0.30	-1.7
3,957,219	-		Sama_3329	0.30	+0.5
3,957,231	+		Sama_3329	0.32	-0.5
3,957,231	+		Sama_3329	0.32	-2.1
3,957,231	+		Sama_3329	0.32	+0.6
3,957,233	+		Sama_3329	0.32	+0.8
3,957,233	+		Sama_3329	0.32	+2.3
3,957,233	+		Sama_3329	0.32	-1.6
3,957,233	+		Sama_3329	0.32	+0.7
3,957,233	+		Sama_3329	0.32	+0.2
3,957,233	+		Sama_3329	0.32	-0.4
3,957,233	+		Sama_3329	0.32	+0.2
3,957,233	+		Sama_3329	0.32	-0.3
3,957,233	+		Sama_3329	0.32	+0.6
3,957,233	+		Sama_3329	0.32	+1.2
3,957,233	+		Sama_3329	0.32	+0.3
3,957,233	+		Sama_3329	0.32	-0.9
3,957,233	+		Sama_3329	0.32	-2.3
3,957,233	+		Sama_3329	0.32	+0.5
3,957,233	+		Sama_3329	0.32	-1.0
3,957,233	+		Sama_3329	0.32	+0.5
3,957,233	+		Sama_3329	0.32	-0.3
3,957,233	+		Sama_3329	0.32	-2.1
3,957,233	+		Sama_3329	0.32	-1.1
3,957,233	+		Sama_3329	0.32	-0.2
3,957,233	+		Sama_3329	0.32	+0.6
3,957,233	+		Sama_3329	0.32	-1.9
3,957,233	+		Sama_3329	0.32	+0.2
3,957,233	+		Sama_3329	0.32	+0.3
3,957,233	+		Sama_3329	0.32	-0.2
3,957,233	+		Sama_3329	0.32	-0.2
3,957,234	-		Sama_3329	0.33	-1.3
3,957,234	-		Sama_3329	0.33	+0.7
3,957,234	-		Sama_3329	0.33	+1.0
3,957,234	-		Sama_3329	0.33	-2.6
3,957,234	-		Sama_3329	0.33	-0.1
3,957,234	-		Sama_3329	0.33	+0.5
3,957,234	-		Sama_3329	0.33	-1.4
3,957,234	-		Sama_3329	0.33	-0.1
3,957,234	-		Sama_3329	0.33	+0.7
3,957,234	-		Sama_3329	0.33	-1.7
3,957,234	-		Sama_3329	0.33	+0.4
3,957,234	-		Sama_3329	0.33	+0.8
3,957,234	-		Sama_3329	0.33	-1.8
3,957,234	-		Sama_3329	0.33	-0.1
3,957,234	-		Sama_3329	0.33	-2.0
3,957,234	-		Sama_3329	0.33	+1.5
3,957,234	-		Sama_3329	0.33	-0.8
3,957,234	-		Sama_3329	0.33	-2.7
3,957,234	-		Sama_3329	0.33	-1.7
3,957,237	+		Sama_3329	0.33	-1.2
3,957,238	-		Sama_3329	0.33	-1.1
3,957,283	+		Sama_3329	0.41	-1.8
3,957,283	+		Sama_3329	0.41	+0.6
3,957,283	+		Sama_3329	0.41	+1.5
3,957,283	+		Sama_3329	0.41	+0.6
3,957,283	+		Sama_3329	0.41	-0.3
3,957,283	+		Sama_3329	0.41	+0.2
3,957,283	+		Sama_3329	0.41	+0.3
3,957,283	+		Sama_3329	0.41	+0.2
3,957,284	-		Sama_3329	0.41	-1.1
3,957,284	-		Sama_3329	0.41	+1.9
3,957,284	-		Sama_3329	0.41	+3.1
3,957,284	-		Sama_3329	0.41	+2.3
3,957,284	-		Sama_3329	0.41	-0.7
3,957,343	+		Sama_3329	0.52	-0.7
3,957,343	+		Sama_3329	0.52	+0.9
3,957,344	-		Sama_3329	0.52	+0.5
3,957,344	-		Sama_3329	0.52	+1.1
3,957,354	+		Sama_3329	0.53	-0.2
3,957,355	-		Sama_3329	0.54	-0.8
3,957,391	-		Sama_3329	0.60	+1.8
3,957,475	-		Sama_3329	0.74	-0.1
3,957,526	+		Sama_3329	0.83	-0.5
3,957,526	+		Sama_3329	0.83	+1.0
3,957,526	+		Sama_3329	0.83	+1.2
3,957,526	+		Sama_3329	0.83	-0.0
3,957,527	-		Sama_3329	0.84	+1.2
3,957,527	-		Sama_3329	0.84	-2.1
3,957,527	-		Sama_3329	0.84	+0.1
3,957,527	-		Sama_3329	0.84	-2.2
3,957,527	-		Sama_3329	0.84	-0.6
3,957,528	+		Sama_3329	0.84	+0.8
3,957,528	+		Sama_3329	0.84	+0.3
3,957,528	+		Sama_3329	0.84	-0.3
3,957,529	-		Sama_3329	0.84	-1.3
3,957,529	-		Sama_3329	0.84	+1.3
3,957,529	-		Sama_3329	0.84	+1.1
3,957,545	+		Sama_3329	0.87	+1.7
3,957,545	+		Sama_3329	0.87	-0.7
3,957,546	-		Sama_3329	0.87	-1.8
3,957,546	-		Sama_3329	0.87	-0.6
3,957,546	-		Sama_3329	0.87	+1.2
3,957,546	-		Sama_3329	0.87	+0.2
3,957,546	-		Sama_3329	0.87	-0.1
3,957,546	-		Sama_3329	0.87	+0.9
3,957,546	-		Sama_3329	0.87	-0.2
3,957,550	-		Sama_3329	0.88	+1.3
3,957,619	+				+1.9
3,957,620	-				+0.5
3,957,620	-				+1.1
3,957,620	-				+1.1
3,957,620	-				-1.1
3,957,633	-				-0.8
3,957,641	+				+0.4
3,957,642	-				-2.4
3,957,674	-				-0.4
3,957,702	+				+0.0
3,957,702	+				+0.3
3,957,703	-				-3.6
3,957,703	-				-0.0
3,957,704	+				+1.1
3,957,704	+				-0.4
3,957,705	-				+0.2
3,957,705	-				+0.6
3,957,705	-				+0.8
3,957,757	+				-1.8
3,957,757	+				+1.0
3,957,758	-				-0.1
3,957,804	-		Sama_3330	0.16	-0.6
3,957,890	+		Sama_3330	0.31	-0.9
3,957,891	-		Sama_3330	0.31	-0.2
3,957,999	+		Sama_3330	0.50	+0.0
3,957,999	+		Sama_3330	0.50	+0.3
3,957,999	+		Sama_3330	0.50	+1.3
3,957,999	+		Sama_3330	0.50	-1.1
3,958,000	-		Sama_3330	0.50	-1.0
3,958,000	-		Sama_3330	0.50	-0.9
3,958,030	-		Sama_3330	0.55	-0.2
3,958,161	+		Sama_3330	0.78	+1.5
3,958,161	+		Sama_3330	0.78	-0.3
3,958,162	-		Sama_3330	0.78	-1.0
3,958,162	-		Sama_3330	0.78	+0.6
3,958,162	-		Sama_3330	0.78	+0.9
3,958,289	+				+1.0
3,958,289	+				+0.3
3,958,289	+				+0.4
3,958,289	+				-0.2
3,958,290	-				+0.0
3,958,290	-				+0.0
3,958,290	-				-1.4
3,958,290	-				+1.4
3,958,290	-				+0.3
3,958,290	-				+0.6
3,958,290	-				+0.6
3,958,319	+				+0.7
3,958,319	+				-1.1
3,958,350	+				-0.6
3,958,351	-				+0.0
3,958,351	-				-0.2
3,958,358	+				+0.3
3,958,358	+				-1.3
3,958,358	+				-1.2
3,958,358	+				+0.1
3,958,358	+				+1.0
3,958,358	+				-0.5
3,958,358	+				-0.8
3,958,358	+				+0.7
3,958,358	+				+0.6
3,958,358	+				+0.3
3,958,358	+				+0.7
3,958,359	-				+0.1
3,958,359	-				-2.0
3,958,359	-				-0.3
3,958,359	-				+0.5
3,958,359	-				-0.1
3,958,359	-				-1.4
3,958,359	-				-1.3
3,958,359	-				-1.2
3,958,359	-				-0.4
3,958,359	-				+0.4
3,958,362	+				+1.4
3,958,362	+				+0.6
3,958,363	-				+0.4
3,958,363	-				+0.3
3,958,363	-				+0.8
3,958,363	-				-1.5
3,958,363	-				+2.0
3,958,413	-				+0.0
3,958,413	-				+0.6
3,958,413	-				-0.8