Strain Fitness in Shewanella amazonensis SB2B around Sama_3232

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,823,944	-				+0.0
3,823,961	+		Sama_3230	0.12	+0.1
3,823,973	+		Sama_3230	0.14	-0.4
3,823,973	+		Sama_3230	0.14	-1.1
3,823,973	+		Sama_3230	0.14	+1.2
3,823,973	+		Sama_3230	0.14	-0.4
3,823,974	-		Sama_3230	0.15	+0.8
3,823,974	-		Sama_3230	0.15	-0.3
3,823,974	-		Sama_3230	0.15	-0.7
3,823,981	-		Sama_3230	0.16	-2.4
3,824,013	-		Sama_3230	0.22	-0.2
3,824,013	-		Sama_3230	0.22	-0.6
3,824,013	-		Sama_3230	0.22	+1.1
3,824,013	-		Sama_3230	0.22	+0.8
3,824,013	-		Sama_3230	0.22	+0.9
3,824,013	-		Sama_3230	0.22	+1.2
3,824,013	-		Sama_3230	0.22	+0.1
3,824,029	+		Sama_3230	0.26	-0.3
3,824,029	+		Sama_3230	0.26	+0.3
3,824,029	+		Sama_3230	0.26	+0.4
3,824,030	-		Sama_3230	0.26	-0.8
3,824,030	-		Sama_3230	0.26	-2.3
3,824,030	-		Sama_3230	0.26	+0.8
3,824,030	-		Sama_3230	0.26	+0.2
3,824,030	-		Sama_3230	0.26	+0.9
3,824,030	-		Sama_3230	0.26	+0.7
3,824,030	-		Sama_3230	0.26	-1.7
3,824,064	+		Sama_3230	0.33	-0.9
3,824,064	+		Sama_3230	0.33	+0.6
3,824,065	-		Sama_3230	0.33	-0.8
3,824,065	-		Sama_3230	0.33	-0.9
3,824,091	+		Sama_3230	0.38	-0.6
3,824,092	-		Sama_3230	0.38	+1.8
3,824,092	-		Sama_3230	0.38	+0.1
3,824,092	-		Sama_3230	0.38	+0.0
3,824,092	-		Sama_3230	0.38	+0.2
3,824,092	-		Sama_3230	0.38	-1.2
3,824,092	-		Sama_3230	0.38	+0.7
3,824,129	+		Sama_3230	0.46	-0.0
3,824,129	+		Sama_3230	0.46	+0.8
3,824,130	-		Sama_3230	0.46	+0.3
3,824,130	-		Sama_3230	0.46	+1.0
3,824,130	-		Sama_3230	0.46	-4.8
3,824,130	-		Sama_3230	0.46	+1.4
3,824,130	-		Sama_3230	0.46	+0.3
3,824,145	+		Sama_3230	0.49	+1.2
3,824,145	+		Sama_3230	0.49	-1.8
3,824,146	-		Sama_3230	0.49	-0.4
3,824,160	+		Sama_3230	0.52	+0.1
3,824,160	+		Sama_3230	0.52	-0.8
3,824,160	+		Sama_3230	0.52	-1.3
3,824,160	+		Sama_3230	0.52	-0.3
3,824,160	+		Sama_3230	0.52	-0.6
3,824,160	+		Sama_3230	0.52	-0.8
3,824,161	-		Sama_3230	0.52	-0.1
3,824,161	-		Sama_3230	0.52	+1.2
3,824,161	-		Sama_3230	0.52	+1.1
3,824,161	-		Sama_3230	0.52	+0.2
3,824,161	-		Sama_3230	0.52	+0.4
3,824,161	-		Sama_3230	0.52	+0.9
3,824,174	+		Sama_3230	0.54	-0.8
3,824,174	+		Sama_3230	0.54	-0.1
3,824,174	+		Sama_3230	0.54	+0.8
3,824,174	+		Sama_3230	0.54	-0.7
3,824,174	+		Sama_3230	0.54	+1.8
3,824,175	-		Sama_3230	0.55	-0.3
3,824,175	-		Sama_3230	0.55	-0.2
3,824,175	-		Sama_3230	0.55	+2.2
3,824,175	-		Sama_3230	0.55	+0.4
3,824,175	-		Sama_3230	0.55	+0.5
3,824,175	-		Sama_3230	0.55	-0.0
3,824,175	-		Sama_3230	0.55	+1.2
3,824,175	-		Sama_3230	0.55	-0.0
3,824,195	-		Sama_3230	0.59	-2.1
3,824,243	+		Sama_3230	0.68	+0.6
3,824,270	+		Sama_3230	0.74	+0.8
3,824,270	+		Sama_3230	0.74	-0.2
3,824,270	+		Sama_3230	0.74	+1.9
3,824,270	+		Sama_3230	0.74	+1.0
3,824,270	+		Sama_3230	0.74	+0.2
3,824,270	+		Sama_3230	0.74	+0.7
3,824,270	+		Sama_3230	0.74	-0.7
3,824,271	-		Sama_3230	0.74	-1.2
3,824,271	-		Sama_3230	0.74	+0.1
3,824,272	+		Sama_3230	0.74	-0.0
3,824,272	+		Sama_3230	0.74	+1.3
3,824,301	+		Sama_3230	0.80	+0.9
3,824,301	+		Sama_3230	0.80	-0.6
3,824,301	+		Sama_3230	0.80	+0.7
3,824,301	+		Sama_3230	0.80	-0.1
3,824,301	+		Sama_3230	0.80	-0.3
3,824,301	+		Sama_3230	0.80	-1.4
3,824,301	+		Sama_3230	0.80	+1.1
3,824,301	+		Sama_3230	0.80	+0.2
3,824,302	-		Sama_3230	0.80	+2.1
3,824,302	-		Sama_3230	0.80	+2.1
3,824,302	-		Sama_3230	0.80	-1.6
3,824,339	+		Sama_3230	0.87	-0.4
3,824,339	+		Sama_3230	0.87	-0.7
3,824,340	-		Sama_3230	0.88	-0.1
3,824,400	-				-0.2
3,824,400	-				+0.5
3,824,459	+		Sama_3231	0.11	+0.2
3,824,459	+		Sama_3231	0.11	-0.5
3,824,466	-		Sama_3231	0.14	-0.5
3,824,466	-		Sama_3231	0.14	+0.7
3,824,524	+		Sama_3231	0.34	+1.4
3,824,524	+		Sama_3231	0.34	+0.6
3,824,524	+		Sama_3231	0.34	+0.0
3,824,524	+		Sama_3231	0.34	-1.6
3,824,524	+		Sama_3231	0.34	+0.4
3,824,524	+		Sama_3231	0.34	-0.6
3,824,524	+		Sama_3231	0.34	+0.1
3,824,525	-		Sama_3231	0.35	+0.0
3,824,525	-		Sama_3231	0.35	-0.1
3,824,525	-		Sama_3231	0.35	+0.0
3,824,525	-		Sama_3231	0.35	-2.3
3,824,525	-		Sama_3231	0.35	-2.2
3,824,600	+		Sama_3231	0.61	+0.7
3,824,600	+		Sama_3231	0.61	-1.5
3,824,600	+		Sama_3231	0.61	+0.2
3,824,600	+		Sama_3231	0.61	+0.1
3,824,601	-		Sama_3231	0.62	-0.2
3,824,601	-		Sama_3231	0.62	-1.0
3,824,618	+		Sama_3231	0.68	-1.6
3,824,619	-		Sama_3231	0.68	+1.4
3,824,619	-		Sama_3231	0.68	+0.7
3,824,624	+		Sama_3231	0.70	+0.1
3,824,624	+		Sama_3231	0.70	+2.3
3,824,624	+		Sama_3231	0.70	-0.5
3,824,625	-		Sama_3231	0.70	-2.7
3,824,625	-		Sama_3231	0.70	+0.4
3,824,625	-		Sama_3231	0.70	+0.2
3,824,632	+		Sama_3231	0.73	-0.4
3,824,632	+		Sama_3231	0.73	+0.5
3,824,661	+		Sama_3231	0.83	-0.3
3,824,662	-		Sama_3231	0.83	-0.7
3,824,763	+				+0.8
3,824,763	+				+0.1
3,824,763	+				+0.3
3,824,763	+				-0.4
3,824,764	-				+0.1
3,824,764	-				+0.6
3,824,764	-				-1.6
3,824,764	-				+0.5
3,824,769	-				+0.1
3,824,769	-				-0.4
3,824,769	-				-0.6
3,824,777	+				-0.8
3,824,777	+				+1.4
3,824,778	-				+0.4
3,824,778	-				+0.8
3,824,778	-				+0.6
3,824,789	+				+0.1
3,824,790	-				-1.6
3,824,790	-				+1.5
3,824,794	+				+0.2
3,824,794	+				-0.9
3,824,794	+				-0.8
3,824,794	+				+0.6
3,824,794	+				-1.3
3,824,795	-				-0.6
3,824,795	-				-1.5
3,824,795	-				-0.7
3,824,795	-				+1.0
3,824,808	+				-1.5
3,824,808	+				-1.6
3,824,851	+				+0.4
3,824,851	+				-1.3
3,824,852	-				-0.4
3,824,852	-				-0.4
3,824,852	-				-2.5
3,824,852	-				+0.5
3,824,852	-				+0.5
3,824,856	+				-1.0
3,824,856	+				+1.2
3,824,856	+				+0.1
3,824,856	+				+1.4
3,824,857	-				+1.4
3,824,867	+				+1.4
3,824,868	-				-0.7
3,824,868	-				+1.0
3,824,868	-				+0.8
3,824,868	-				+0.5
3,824,868	-				+0.9
3,824,868	-				-0.8
3,824,877	-				+0.3
3,824,877	-				-0.1
3,824,916	+				-0.3
3,824,917	-				+0.4
3,824,924	-				-2.6
3,824,924	-				+0.2
3,824,924	-				+0.1
3,824,946	+				-0.8
3,824,957	+		Sama_3232	0.11	-0.6
3,824,957	+		Sama_3232	0.11	+2.1
3,824,957	+		Sama_3232	0.11	-2.5
3,824,957	+		Sama_3232	0.11	-0.2
3,824,957	+		Sama_3232	0.11	-0.8
3,824,957	+		Sama_3232	0.11	-0.9
3,824,957	+		Sama_3232	0.11	-0.9
3,824,957	+		Sama_3232	0.11	+0.7
3,824,957	+		Sama_3232	0.11	+0.7
3,824,957	+		Sama_3232	0.11	-0.2
3,824,957	+		Sama_3232	0.11	-1.4
3,824,957	+		Sama_3232	0.11	+0.6
3,824,957	+		Sama_3232	0.11	-1.0
3,824,957	+		Sama_3232	0.11	-0.0
3,824,957	+		Sama_3232	0.11	-0.4
3,824,958	-		Sama_3232	0.11	+0.4
3,824,958	-		Sama_3232	0.11	+0.3
3,824,958	-		Sama_3232	0.11	-0.1
3,824,958	-		Sama_3232	0.11	-0.9
3,824,958	-		Sama_3232	0.11	-0.5
3,824,958	-		Sama_3232	0.11	-1.4
3,824,958	-		Sama_3232	0.11	-0.4
3,825,102	-		Sama_3232	0.39	-0.3
3,825,102	-		Sama_3232	0.39	-2.1
3,825,135	+		Sama_3232	0.46	-0.6
3,825,135	+		Sama_3232	0.46	-1.3
3,825,136	-		Sama_3232	0.46	+0.7
3,825,166	+		Sama_3232	0.52	+0.6
3,825,166	+		Sama_3232	0.52	+0.1
3,825,167	-		Sama_3232	0.52	+0.7
3,825,167	-		Sama_3232	0.52	-1.0
3,825,230	+		Sama_3232	0.65	-0.8
3,825,231	-		Sama_3232	0.65	-0.6
3,825,243	+		Sama_3232	0.67	-1.6
3,825,287	-		Sama_3232	0.76	+0.2
3,825,287	-		Sama_3232	0.76	-1.2
3,825,287	-		Sama_3232	0.76	-0.9
3,825,290	+		Sama_3232	0.76	-2.5
3,825,291	-		Sama_3232	0.76	-0.4
3,825,291	-		Sama_3232	0.76	-0.1
3,825,337	+		Sama_3232	0.85	-1.2
3,825,338	-		Sama_3232	0.86	+0.8
3,825,338	-		Sama_3232	0.86	+0.7
3,825,374	+				-0.5
3,825,374	+				-0.2
3,825,374	+				-1.4
3,825,374	+				-0.3
3,825,374	+				+0.8
3,825,375	-				+1.0
3,825,375	-				+0.4
3,825,375	-				+0.4
3,825,375	-				-0.5
3,825,375	-				-0.2
3,825,375	-				+1.2
3,825,375	-				+0.8
3,825,375	-				-1.8
3,825,375	-				-0.5
3,825,375	-				-1.8
3,825,375	-				-0.0
3,825,375	-				+1.6
3,825,375	-				-2.4
3,825,378	+				-0.4
3,825,379	-				-0.6
3,825,430	+				-0.3
3,825,430	+				+0.5
3,825,430	+				+1.2
3,825,430	+				-1.2
3,825,430	+				+0.3
3,825,431	-				-0.6
3,825,431	-				-2.2
3,825,431	-				+1.2
3,825,431	-				+0.6
3,825,431	-				-1.2
3,825,431	-				-2.2
3,825,431	-				-1.6
3,825,431	-				-0.6
3,825,431	-				-0.4
3,825,431	-				-0.2
3,825,431	-				-0.5
3,825,431	-				-0.9
3,825,483	-				+0.7
3,825,495	-				+0.1
3,825,573	+				-1.4
3,825,573	+				-1.4
3,825,574	-				-0.1
3,825,574	-				+0.4
3,825,574	-				-0.4
3,825,574	-				-0.2
3,825,582	+				-0.3
3,825,582	+				+0.2
3,825,615	+				-1.5
3,825,615	+				+0.2
3,825,615	+				-1.3
3,825,615	+				-0.2
3,825,616	-				+0.5
3,825,616	-				-0.9
3,825,653	+				+0.6
3,825,654	-				-0.1
3,825,654	-				-0.6
3,825,654	-				+0.2
3,825,671	+				-0.3
3,825,702	+				+1.0
3,825,702	+				-0.8
3,825,702	+				-0.9
3,825,702	+				-0.9
3,825,702	+				+0.1
3,825,702	+				-0.3
3,825,702	+				-1.2
3,825,702	+				+0.2
3,825,702	+				+0.9
3,825,702	+				+1.9
3,825,702	+				-0.4
3,825,702	+				-1.3
3,825,702	+				-1.8
3,825,703	-				-0.3
3,825,703	-				-0.6
3,825,703	-				+0.5
3,825,703	-				+1.2
3,825,703	-				+0.0
3,825,703	-				-1.7
3,825,714	+				-1.9
3,825,714	+				+0.2
3,825,714	+				-0.7
3,825,715	-				-2.4
3,825,797	+				+1.3
3,825,806	+				+2.4
3,825,842	+				-0.6
3,826,000	+		Sama_3233	0.11	+1.2
3,826,033	+		Sama_3233	0.12	+0.4
3,826,034	-		Sama_3233	0.12	-0.2
3,826,034	-		Sama_3233	0.12	-2.8
3,826,034	-		Sama_3233	0.12	+0.2
3,826,054	+		Sama_3233	0.13	-0.2
3,826,054	+		Sama_3233	0.13	+0.6
3,826,054	+		Sama_3233	0.13	+1.1
3,826,055	-		Sama_3233	0.13	+1.1
3,826,055	-		Sama_3233	0.13	+0.1
3,826,055	-		Sama_3233	0.13	-0.8
3,826,095	+		Sama_3233	0.15	+0.2
3,826,095	+		Sama_3233	0.15	-1.4
3,826,095	+		Sama_3233	0.15	+0.2
3,826,095	+		Sama_3233	0.15	-1.9
3,826,096	-		Sama_3233	0.15	+1.8
3,826,169	+		Sama_3233	0.19	+1.4
3,826,169	+		Sama_3233	0.19	-0.1
3,826,170	-		Sama_3233	0.19	+1.2
3,826,185	-		Sama_3233	0.20	+1.0
3,826,185	-		Sama_3233	0.20	-0.5
3,826,185	-		Sama_3233	0.20	+0.6
3,826,268	+		Sama_3233	0.24	-3.1
3,826,269	-		Sama_3233	0.24	+1.2
3,826,269	-		Sama_3233	0.24	-0.6
3,826,269	-		Sama_3233	0.24	+0.2
3,826,287	+		Sama_3233	0.25	+2.0
3,826,287	+		Sama_3233	0.25	+1.6
3,826,287	+		Sama_3233	0.25	+0.6
3,826,287	+		Sama_3233	0.25	+0.1
3,826,287	+		Sama_3233	0.25	+1.4
3,826,287	+		Sama_3233	0.25	-0.6
3,826,287	+		Sama_3233	0.25	+1.3
3,826,287	+		Sama_3233	0.25	-1.8
3,826,287	+		Sama_3233	0.25	+0.4
3,826,288	-		Sama_3233	0.25	+0.8
3,826,288	-		Sama_3233	0.25	+0.8
3,826,288	-		Sama_3233	0.25	+1.6
3,826,288	-		Sama_3233	0.25	+0.4
3,826,288	-		Sama_3233	0.25	+1.5
3,826,288	-		Sama_3233	0.25	+1.4
3,826,288	-		Sama_3233	0.25	-0.8
3,826,288	-		Sama_3233	0.25	-0.0
3,826,288	-		Sama_3233	0.25	+0.9
3,826,288	-		Sama_3233	0.25	+1.7
3,826,289	+		Sama_3233	0.25	-1.1
3,826,289	+		Sama_3233	0.25	+0.8
3,826,290	-		Sama_3233	0.25	-0.9
3,826,290	-		Sama_3233	0.25	-1.1
3,826,290	-		Sama_3233	0.25	+1.6
3,826,290	-		Sama_3233	0.25	-1.5
3,826,394	+		Sama_3233	0.30	+1.1
3,826,395	-		Sama_3233	0.30	-0.5
3,826,395	-		Sama_3233	0.30	-0.1
3,826,395	-		Sama_3233	0.30	+1.4
3,826,395	-		Sama_3233	0.30	+0.5