Strain Fitness in Shewanella amazonensis SB2B around Sama_3138

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,725,454	+				-0.1
3,725,455	-				-0.8
3,725,455	-				+0.1
3,725,455	-				+1.5
3,725,460	+				-0.1
3,725,460	+				-0.5
3,725,461	-				+0.3
3,725,474	+				+0.9
3,725,475	-				+0.3
3,725,475	-				+0.3
3,725,475	-				-0.3
3,725,475	-				+0.6
3,725,511	+		Sama_3137	0.10	+1.5
3,725,512	-		Sama_3137	0.10	+0.2
3,725,532	+		Sama_3137	0.12	-0.7
3,725,533	-		Sama_3137	0.12	-1.7
3,725,641	+		Sama_3137	0.24	-0.1
3,725,642	-		Sama_3137	0.24	-0.7
3,725,665	-		Sama_3137	0.26	-0.1
3,725,690	+		Sama_3137	0.29	-0.5
3,725,691	-		Sama_3137	0.29	+0.7
3,725,691	-		Sama_3137	0.29	+2.2
3,725,691	-		Sama_3137	0.29	-0.8
3,725,708	-		Sama_3137	0.31	-1.6
3,725,736	+		Sama_3137	0.34	+0.3
3,725,736	+		Sama_3137	0.34	-0.5
3,725,736	+		Sama_3137	0.34	-1.1
3,725,737	-		Sama_3137	0.34	-0.1
3,725,737	-		Sama_3137	0.34	-0.1
3,725,737	-		Sama_3137	0.34	+0.7
3,725,737	-		Sama_3137	0.34	+0.1
3,725,737	-		Sama_3137	0.34	+0.1
3,725,737	-		Sama_3137	0.34	-1.5
3,725,737	-		Sama_3137	0.34	+0.9
3,725,737	-		Sama_3137	0.34	+0.6
3,725,740	+		Sama_3137	0.34	-0.0
3,725,740	+		Sama_3137	0.34	+0.1
3,725,740	+		Sama_3137	0.34	+0.4
3,725,741	-		Sama_3137	0.34	-0.3
3,725,788	-		Sama_3137	0.39	+0.1
3,725,788	-		Sama_3137	0.39	-0.0
3,725,793	+		Sama_3137	0.40	+0.6
3,725,809	+		Sama_3137	0.41	+0.2
3,725,809	+		Sama_3137	0.41	+0.5
3,725,809	+		Sama_3137	0.41	+1.7
3,725,810	-		Sama_3137	0.41	+0.9
3,725,810	-		Sama_3137	0.41	-0.6
3,725,810	-		Sama_3137	0.41	+0.1
3,725,810	-		Sama_3137	0.41	-1.3
3,725,810	-		Sama_3137	0.41	-0.6
3,725,835	+		Sama_3137	0.44	+0.7
3,725,835	+		Sama_3137	0.44	-0.2
3,725,895	+		Sama_3137	0.50	-0.3
3,725,895	+		Sama_3137	0.50	-3.8
3,725,896	-		Sama_3137	0.50	+0.6
3,725,944	+		Sama_3137	0.55	-0.9
3,725,944	+		Sama_3137	0.55	+0.3
3,725,945	-		Sama_3137	0.55	-1.6
3,725,955	+		Sama_3137	0.56	-0.8
3,725,955	+		Sama_3137	0.56	-1.3
3,725,994	+		Sama_3137	0.61	-0.8
3,725,994	+		Sama_3137	0.61	-1.3
3,725,994	+		Sama_3137	0.61	+0.9
3,726,035	+		Sama_3137	0.65	-0.1
3,726,035	+		Sama_3137	0.65	-0.7
3,726,036	-		Sama_3137	0.65	-2.0
3,726,062	+		Sama_3137	0.68	-0.2
3,726,062	+		Sama_3137	0.68	+0.0
3,726,062	+		Sama_3137	0.68	-1.0
3,726,062	+		Sama_3137	0.68	-0.1
3,726,063	-		Sama_3137	0.68	+1.0
3,726,063	-		Sama_3137	0.68	-2.7
3,726,063	-		Sama_3137	0.68	-0.3
3,726,063	-		Sama_3137	0.68	+0.6
3,726,175	-		Sama_3137	0.79	-1.3
3,726,322	+				+1.3
3,726,361	+				+0.2
3,726,362	-				+0.3
3,726,370	+				-0.7
3,726,370	+				+0.3
3,726,370	+				-1.8
3,726,370	+				+0.1
3,726,370	+				+1.3
3,726,371	-				-0.3
3,726,380	+				-0.3
3,726,380	+				-0.3
3,726,422	-				+0.3
3,726,423	+				+2.5
3,726,503	+		Sama_3138	0.19	+1.6
3,726,509	-		Sama_3138	0.20	+0.7
3,726,527	-		Sama_3138	0.24	-2.5
3,726,579	+		Sama_3138	0.37	+0.3
3,726,580	-		Sama_3138	0.37	-0.7
3,726,754	+		Sama_3138	0.78	-1.3
3,726,754	+		Sama_3138	0.78	-0.2
3,726,755	-		Sama_3138	0.78	+0.1
3,726,755	-		Sama_3138	0.78	-0.3
3,726,755	-		Sama_3138	0.78	+0.1
3,726,755	-		Sama_3138	0.78	-1.0
3,726,801	-		Sama_3138	0.89	-1.1
3,726,842	+				-0.4
3,726,843	-				-2.4
3,726,843	-				+0.6
3,726,843	-				+1.9
3,726,843	-				-1.0
3,726,862	+				-0.1
3,726,863	-				-0.0
3,726,912	-				+1.9
3,726,913	+				+1.7
3,726,913	+				-1.0
3,726,913	+				+0.3
3,726,913	+				-1.6
3,726,914	-				+0.7
3,726,914	-				+0.6
3,726,916	-				-0.7
3,726,919	-				+2.0
3,726,923	+				-0.5
3,726,981	+				-0.3
3,727,101	+		Sama_3139	0.23	+0.7
3,727,102	-		Sama_3139	0.23	-1.2
3,727,231	-		Sama_3139	0.40	-0.5
3,727,263	+		Sama_3139	0.45	-0.5
3,727,263	+		Sama_3139	0.45	+0.3
3,727,263	+		Sama_3139	0.45	+0.1
3,727,263	+		Sama_3139	0.45	+0.5
3,727,263	+		Sama_3139	0.45	-0.7
3,727,263	+		Sama_3139	0.45	-2.3
3,727,263	+		Sama_3139	0.45	+0.6
3,727,264	-		Sama_3139	0.45	+0.3
3,727,264	-		Sama_3139	0.45	+1.3
3,727,321	-		Sama_3139	0.52	-0.3
3,727,329	+		Sama_3139	0.54	+0.4
3,727,330	-		Sama_3139	0.54	+0.9
3,727,330	-		Sama_3139	0.54	+0.5
3,727,352	+		Sama_3139	0.57	-0.1
3,727,352	+		Sama_3139	0.57	+0.6
3,727,352	+		Sama_3139	0.57	-0.2
3,727,353	-		Sama_3139	0.57	-0.7
3,727,353	-		Sama_3139	0.57	+1.2
3,727,354	+		Sama_3139	0.57	-0.8
3,727,354	+		Sama_3139	0.57	+0.4
3,727,354	+		Sama_3139	0.57	+0.8
3,727,354	+		Sama_3139	0.57	+0.5
3,727,354	+		Sama_3139	0.57	+0.7
3,727,354	+		Sama_3139	0.57	-3.0
3,727,354	+		Sama_3139	0.57	-0.8
3,727,355	-		Sama_3139	0.57	-0.8
3,727,355	-		Sama_3139	0.57	-0.2
3,727,355	-		Sama_3139	0.57	+1.5
3,727,355	-		Sama_3139	0.57	+1.9
3,727,355	-		Sama_3139	0.57	+0.2
3,727,355	-		Sama_3139	0.57	-0.8
3,727,408	-		Sama_3139	0.64	-0.9
3,727,408	-		Sama_3139	0.64	+0.2
3,727,408	-		Sama_3139	0.64	+2.0
3,727,408	-		Sama_3139	0.64	+1.3
3,727,413	+		Sama_3139	0.65	-0.1
3,727,413	+		Sama_3139	0.65	-0.1
3,727,414	-		Sama_3139	0.65	+0.7
3,727,469	+		Sama_3139	0.72	+0.0
3,727,470	-		Sama_3139	0.73	-1.8
3,727,470	-		Sama_3139	0.73	+0.5
3,727,470	-		Sama_3139	0.73	+1.3
3,727,510	+		Sama_3139	0.78	+0.3
3,727,510	+		Sama_3139	0.78	+2.1
3,727,510	+		Sama_3139	0.78	-0.7
3,727,510	+		Sama_3139	0.78	-0.7
3,727,510	+		Sama_3139	0.78	+0.4
3,727,510	+		Sama_3139	0.78	+0.1
3,727,511	-		Sama_3139	0.78	+2.0
3,727,511	-		Sama_3139	0.78	+1.5
3,727,511	-		Sama_3139	0.78	-0.8
3,727,511	-		Sama_3139	0.78	-2.1
3,727,511	-		Sama_3139	0.78	+0.5
3,727,518	+		Sama_3139	0.79	+0.8
3,727,519	-		Sama_3139	0.79	-1.0
3,727,519	-		Sama_3139	0.79	+0.1
3,727,519	-		Sama_3139	0.79	-1.4
3,727,519	-		Sama_3139	0.79	-0.8
3,727,563	+		Sama_3139	0.85	+0.2
3,727,563	+		Sama_3139	0.85	+0.6
3,727,563	+		Sama_3139	0.85	+0.0
3,727,563	+		Sama_3139	0.85	+0.3
3,727,563	+		Sama_3139	0.85	-2.8
3,727,563	+		Sama_3139	0.85	-1.0
3,727,563	+		Sama_3139	0.85	-0.5
3,727,563	+		Sama_3139	0.85	+1.8
3,727,563	+		Sama_3139	0.85	-3.1
3,727,563	+		Sama_3139	0.85	-2.3
3,727,563	+		Sama_3139	0.85	-0.4
3,727,563	+		Sama_3139	0.85	-0.5
3,727,563	+		Sama_3139	0.85	-0.7
3,727,563	+		Sama_3139	0.85	+1.9
3,727,563	+		Sama_3139	0.85	+0.8
3,727,563	+		Sama_3139	0.85	+0.3
3,727,563	+		Sama_3139	0.85	-1.5
3,727,563	+		Sama_3139	0.85	-0.5
3,727,563	+		Sama_3139	0.85	+1.1
3,727,564	-		Sama_3139	0.85	+0.5
3,727,564	-		Sama_3139	0.85	-0.8
3,727,564	-		Sama_3139	0.85	-0.5
3,727,564	-		Sama_3139	0.85	-1.3
3,727,564	-		Sama_3139	0.85	-0.1
3,727,564	-		Sama_3139	0.85	+2.3
3,727,564	-		Sama_3139	0.85	+0.3
3,727,564	-		Sama_3139	0.85	+1.1
3,727,564	-		Sama_3139	0.85	-1.3
3,727,564	-		Sama_3139	0.85	-0.2
3,727,564	-		Sama_3139	0.85	+0.5
3,727,564	-		Sama_3139	0.85	-0.7
3,727,567	+		Sama_3139	0.86	-1.0
3,727,567	+		Sama_3139	0.86	+0.4
3,727,567	+		Sama_3139	0.86	+0.0
3,727,567	+		Sama_3139	0.86	+0.9
3,727,567	+		Sama_3139	0.86	+0.5
3,727,567	+		Sama_3139	0.86	+0.1
3,727,567	+		Sama_3139	0.86	+0.0
3,727,567	+		Sama_3139	0.86	+0.9
3,727,567	+		Sama_3139	0.86	-0.3
3,727,567	+		Sama_3139	0.86	+0.6
3,727,567	+		Sama_3139	0.86	-1.4
3,727,567	+		Sama_3139	0.86	+0.9
3,727,568	-		Sama_3139	0.86	+1.0
3,727,568	-		Sama_3139	0.86	+0.1
3,727,568	-		Sama_3139	0.86	-1.9
3,727,568	-		Sama_3139	0.86	+0.1
3,727,568	-		Sama_3139	0.86	-0.5
3,727,636	+				-0.3
3,727,636	+				+2.1
3,727,636	+				-1.5
3,727,637	-				-0.3
3,727,638	+				+0.3
3,727,638	+				-0.1
3,727,638	+				-1.0
3,727,639	-				-1.1
3,727,639	-				-0.4
3,727,639	-				-1.5
3,727,639	-				-0.0
3,727,639	-				-0.4
3,727,676	+				+0.8
3,727,676	+				-1.3
3,727,677	-				-3.3
3,727,704	+				-0.4
3,727,704	+				+0.1
3,727,705	-				+0.0
3,727,705	-				-1.0
3,727,715	+				-0.1
3,727,716	-				-0.5
3,727,716	-				+0.8
3,727,716	-				+0.6
3,727,716	-				-0.4
3,727,730	-				-0.1