Strain Fitness in Shewanella amazonensis SB2B around Sama_3096

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,668,816	+				+0.4
3,668,885	-		Sama_3095	0.10	-1.3
3,668,885	-		Sama_3095	0.10	+4.6
3,668,885	-		Sama_3095	0.10	-0.0
3,668,885	-		Sama_3095	0.10	-1.4
3,668,885	-		Sama_3095	0.10	+0.0
3,668,885	-		Sama_3095	0.10	+0.8
3,668,901	-		Sama_3095	0.12	+0.4
3,668,955	-		Sama_3095	0.18	-0.4
3,668,987	+		Sama_3095	0.22	-0.5
3,668,988	-		Sama_3095	0.22	-0.8
3,668,988	-		Sama_3095	0.22	-0.3
3,668,988	-		Sama_3095	0.22	-0.1
3,669,000	+		Sama_3095	0.24	-0.2
3,669,033	-		Sama_3095	0.27	-1.1
3,669,033	-		Sama_3095	0.27	+0.6
3,669,159	-		Sama_3095	0.42	+0.2
3,669,282	+		Sama_3095	0.56	+0.5
3,669,298	+		Sama_3095	0.58	+0.3
3,669,298	+		Sama_3095	0.58	+0.3
3,669,298	+		Sama_3095	0.58	+1.1
3,669,298	+		Sama_3095	0.58	-1.0
3,669,298	+		Sama_3095	0.58	-0.3
3,669,299	-		Sama_3095	0.58	-0.8
3,669,299	-		Sama_3095	0.58	+0.5
3,669,299	-		Sama_3095	0.58	+0.9
3,669,299	-		Sama_3095	0.58	+0.5
3,669,299	-		Sama_3095	0.58	+1.8
3,669,346	-		Sama_3095	0.63	-0.4
3,669,388	-		Sama_3095	0.68	+0.2
3,669,463	+		Sama_3095	0.77	+3.3
3,669,463	+		Sama_3095	0.77	+0.3
3,669,463	+		Sama_3095	0.77	-0.3
3,669,463	+		Sama_3095	0.77	-0.9
3,669,464	-		Sama_3095	0.77	+0.3
3,669,464	-		Sama_3095	0.77	+1.2
3,669,464	-		Sama_3095	0.77	-1.0
3,669,547	+		Sama_3095	0.86	-1.3
3,669,547	+		Sama_3095	0.86	+1.5
3,669,548	-		Sama_3095	0.86	-2.5
3,669,548	-		Sama_3095	0.86	-1.2
3,669,548	-		Sama_3095	0.86	+0.9
3,669,554	-		Sama_3095	0.87	+0.1
3,669,563	-		Sama_3095	0.88	-0.4
3,669,589	+				+1.0
3,669,590	-				-0.1
3,669,590	-				-0.5
3,669,591	+				+1.3
3,669,591	+				+1.5
3,669,591	+				-1.0
3,669,591	+				-2.1
3,669,591	+				-0.6
3,669,591	+				-0.9
3,669,591	+				+0.5
3,669,591	+				-1.1
3,669,591	+				-2.0
3,669,592	-				-2.0
3,669,592	-				+0.7
3,669,592	-				+0.9
3,669,592	-				+0.5
3,669,592	-				-0.5
3,669,592	-				+0.1
3,669,592	-				-0.5
3,669,631	+				-0.1
3,669,656	+				+0.3
3,669,657	-				-0.1
3,669,734	+				-2.4
3,669,734	+				+0.8
3,669,735	-				-0.1
3,669,735	-				+1.5
3,669,768	+				+1.2
3,669,768	+				-0.1
3,669,769	-				-0.5
3,669,772	+				-0.7
3,669,773	-				+0.7
3,669,785	+				-2.4
3,669,785	+				+0.7
3,669,786	-				-1.3
3,669,786	-				-2.0
3,669,786	-				+0.4
3,669,786	-				-0.6
3,669,788	+				+0.8
3,669,788	+				+0.9
3,669,788	+				-0.5
3,669,789	-				+0.0
3,669,795	+				-0.5
3,669,795	+				-0.2
3,669,796	-				-1.9
3,669,807	+				-0.6
3,669,852	+				-1.2
3,669,892	+		Sama_3096	0.16	-0.0
3,669,926	+		Sama_3096	0.21	-2.2
3,669,926	+		Sama_3096	0.21	+2.3
3,669,926	+		Sama_3096	0.21	-0.6
3,669,927	-		Sama_3096	0.21	+1.3
3,669,949	+		Sama_3096	0.24	-0.2
3,669,950	-		Sama_3096	0.24	+2.4
3,669,950	-		Sama_3096	0.24	-0.0
3,669,950	-		Sama_3096	0.24	-1.7
3,669,971	+		Sama_3096	0.28	-2.3
3,669,971	+		Sama_3096	0.28	-0.0
3,669,972	-		Sama_3096	0.28	+0.2
3,669,972	-		Sama_3096	0.28	-0.2
3,669,972	-		Sama_3096	0.28	-0.5
3,669,972	-		Sama_3096	0.28	-2.2
3,669,997	-		Sama_3096	0.31	-2.3
3,669,998	+		Sama_3096	0.32	+0.0
3,669,999	-		Sama_3096	0.32	+1.3
3,670,028	+		Sama_3096	0.36	+0.7
3,670,029	-		Sama_3096	0.36	-2.5
3,670,060	+		Sama_3096	0.41	+0.3
3,670,061	-		Sama_3096	0.41	+1.9
3,670,061	-		Sama_3096	0.41	-0.7
3,670,061	-		Sama_3096	0.41	-0.5
3,670,122	+		Sama_3096	0.50	-0.7
3,670,211	+		Sama_3096	0.63	-0.9
3,670,212	-		Sama_3096	0.64	-0.9
3,670,212	-		Sama_3096	0.64	-2.2
3,670,212	-		Sama_3096	0.64	-0.5
3,670,212	-		Sama_3096	0.64	+2.3
3,670,212	-		Sama_3096	0.64	-1.0
3,670,212	-		Sama_3096	0.64	-1.0
3,670,212	-		Sama_3096	0.64	-0.5
3,670,212	-		Sama_3096	0.64	+1.9
3,670,215	-		Sama_3096	0.64	+0.3
3,670,285	-		Sama_3096	0.74	+1.0
3,670,285	-		Sama_3096	0.74	-0.4
3,670,297	+		Sama_3096	0.76	+0.5
3,670,327	+		Sama_3096	0.81	+0.6
3,670,327	+		Sama_3096	0.81	-0.3
3,670,327	+		Sama_3096	0.81	-1.5
3,670,327	+		Sama_3096	0.81	-0.5
3,670,327	+		Sama_3096	0.81	-0.7
3,670,327	+		Sama_3096	0.81	+0.5
3,670,327	+		Sama_3096	0.81	-1.3
3,670,327	+		Sama_3096	0.81	+1.3
3,670,327	+		Sama_3096	0.81	-0.6
3,670,327	+		Sama_3096	0.81	+1.5
3,670,328	-		Sama_3096	0.81	+1.0
3,670,328	-		Sama_3096	0.81	+0.4
3,670,328	-		Sama_3096	0.81	+1.6
3,670,328	-		Sama_3096	0.81	-1.5
3,670,328	-		Sama_3096	0.81	-0.6
3,670,328	-		Sama_3096	0.81	+1.5
3,670,328	-		Sama_3096	0.81	-0.2
3,670,328	-		Sama_3096	0.81	+3.3
3,670,371	+		Sama_3096	0.87	-0.8
3,670,372	-		Sama_3096	0.87	-0.5
3,670,373	+		Sama_3096	0.88	-0.5
3,670,373	+		Sama_3096	0.88	-1.7
3,670,373	+		Sama_3096	0.88	+0.1
3,670,374	-		Sama_3096	0.88	-0.9
3,670,374	-		Sama_3096	0.88	-0.7
3,670,374	-		Sama_3096	0.88	-2.6
3,670,404	+				+0.1
3,670,405	-				-0.1
3,670,420	+				-0.1
3,670,420	+				-0.3
3,670,434	+				-0.9
3,670,434	+				+1.3
3,670,461	+				-1.0
3,670,461	+				+0.6
3,670,486	+				-1.3
3,670,486	+				-1.0
3,670,487	-				-1.0
3,670,488	+				-0.7
3,670,489	-				-1.9
3,670,489	-				+0.3
3,670,539	+				-0.6
3,670,539	+				+0.2
3,670,539	+				+0.0
3,670,540	-				-0.5
3,670,540	-				+0.8
3,670,540	-				+0.3
3,670,540	-				-0.7
3,670,540	-				-0.0
3,670,540	-				-0.1
3,670,541	+				-0.7
3,670,541	+				+1.3
3,670,541	+				-1.9
3,670,541	+				+1.2
3,670,541	+				-1.5
3,670,541	+				-0.7
3,670,541	+				-0.1
3,670,541	+				-0.3
3,670,541	+				+1.9
3,670,541	+				-0.4
3,670,541	+				-0.3
3,670,541	+				-1.7
3,670,541	+				+0.2
3,670,541	+				-1.9
3,670,542	-				-2.8
3,670,542	-				+0.8
3,670,542	-				-0.6
3,670,542	-				+1.1
3,670,542	-				+1.7
3,670,542	-				+0.5
3,670,542	-				+0.4
3,670,542	-				+0.6
3,670,542	-				+1.3
3,670,542	-				-0.2
3,670,542	-				-1.3
3,670,542	-				+0.8
3,670,542	-				-0.5
3,670,542	-				+1.3
3,670,542	-				+2.5
3,670,548	+				-0.0
3,670,549	-				-0.2
3,670,549	-				+0.0
3,670,621	+				-0.1
3,670,621	+				+0.3
3,670,642	+				+1.5
3,670,676	-				+0.0
3,670,676	-				-0.6
3,670,696	+				-0.3
3,670,696	+				-0.3
3,670,697	-				-0.4
3,670,716	+				-0.1
3,670,717	-				+0.7
3,670,729	+				+1.3
3,670,729	+				-0.9
3,670,729	+				+0.1
3,670,729	+				-3.1
3,670,729	+				-0.4
3,670,729	+				+1.0
3,670,729	+				+0.5
3,670,729	+				-0.9
3,670,730	-				+1.0
3,670,730	-				-0.3
3,670,730	-				+0.6
3,670,730	-				+1.6
3,670,730	-				+0.6
3,670,730	-				+0.5
3,670,730	-				+2.2
3,670,733	+				-2.7
3,670,734	-				-0.4
3,670,734	-				-0.8
3,670,758	+				-0.2
3,670,758	+				+0.8
3,670,758	+				-0.3
3,670,758	+				-0.7
3,670,758	+				+0.4
3,670,758	+				-1.2
3,670,759	-				-2.9
3,670,759	-				+0.4
3,670,759	-				+0.1
3,670,759	-				-0.1
3,670,792	+				+2.7
3,670,792	+				-0.1
3,670,793	-				-1.0
3,670,793	-				-0.4
3,670,826	-				+1.0
3,670,826	-				-0.3
3,670,826	-				+0.3
3,670,844	+				+0.6
3,670,844	+				-1.5
3,670,845	-				+0.5
3,670,845	-				-0.2
3,670,878	+		Sama_3097	0.21	-0.7
3,670,979	-		Sama_3097	0.61	+0.9
3,671,008	-		Sama_3097	0.72	-1.5
3,671,059	-				-1.3
3,671,059	-				+0.2
3,671,059	-				-0.3
3,671,059	-				-0.5
3,671,114	+				+1.0
3,671,114	+				+0.5
3,671,114	+				+0.8
3,671,114	+				+0.2
3,671,114	+				+0.7
3,671,115	-				-0.1
3,671,115	-				-1.9
3,671,115	-				+0.5
3,671,115	-				+0.4
3,671,115	-				-1.0
3,671,115	-				-0.2
3,671,174	+				+1.0
3,671,174	+				-0.2
3,671,174	+				-0.3
3,671,200	+				-1.0
3,671,200	+				-0.7
3,671,201	-				-0.9
3,671,201	-				-1.9
3,671,228	+				-2.0
3,671,236	+				-1.2
3,671,237	-				+0.2
3,671,261	+				-0.9
3,671,261	+				+1.3
3,671,262	-				-0.4
3,671,262	-				-1.0
3,671,273	+				+1.1
3,671,334	+				-1.7
3,671,334	+				-0.5
3,671,357	+				-1.6
3,671,357	+				-0.7
3,671,357	+				-0.4
3,671,357	+				+0.2
3,671,357	+				-3.3
3,671,357	+				+1.0
3,671,357	+				+0.4
3,671,358	-				+0.6
3,671,358	-				-0.0
3,671,358	-				-0.0
3,671,358	-				+1.0
3,671,358	-				+0.3
3,671,358	-				+0.7
3,671,358	-				-1.3
3,671,358	-				+0.1
3,671,393	+				-1.4
3,671,393	+				-2.1
3,671,394	-				+1.1
3,671,394	-				+0.9
3,671,442	+				-1.9
3,671,442	+				-1.4
3,671,442	+				+1.1
3,671,442	+				-0.3
3,671,442	+				+0.5
3,671,442	+				+1.3
3,671,442	+				-2.0
3,671,442	+				+1.0
3,671,442	+				-1.3
3,671,442	+				+0.7
3,671,442	+				-0.5
3,671,443	-				+1.8
3,671,443	-				+0.6
3,671,443	-				-0.2
3,671,443	-				-0.2
3,671,443	-				-0.8
3,671,443	-				+1.5
3,671,443	-				+0.0
3,671,443	-				-1.5
3,671,446	+				+0.5
3,671,447	-				+0.7
3,671,447	-				-2.0
3,671,447	-				-0.5