Strain Fitness in Shewanella amazonensis SB2B around Sama_3006

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,577,273	-				+2.6
3,577,285	+				+1.9
3,577,296	-		Sama_3004	0.11	+4.1
3,577,346	+		Sama_3004	0.19	+1.3
3,577,346	+		Sama_3004	0.19	+1.0
3,577,346	+		Sama_3004	0.19	-1.9
3,577,347	-		Sama_3004	0.19	-2.4
3,577,347	-		Sama_3004	0.19	+0.4
3,577,347	-		Sama_3004	0.19	+1.8
3,577,347	-		Sama_3004	0.19	+2.7
3,577,349	+		Sama_3004	0.20	-0.7
3,577,349	+		Sama_3004	0.20	+3.4
3,577,349	+		Sama_3004	0.20	-0.7
3,577,349	+		Sama_3004	0.20	-0.5
3,577,349	+		Sama_3004	0.20	+4.9
3,577,349	+		Sama_3004	0.20	+1.3
3,577,349	+		Sama_3004	0.20	-1.6
3,577,350	-		Sama_3004	0.20	+3.2
3,577,350	-		Sama_3004	0.20	+3.2
3,577,350	-		Sama_3004	0.20	+2.7
3,577,350	-		Sama_3004	0.20	+2.2
3,577,350	-		Sama_3004	0.20	+3.7
3,577,350	-		Sama_3004	0.20	-0.8
3,577,350	-		Sama_3004	0.20	-1.9
3,577,350	-		Sama_3004	0.20	+2.6
3,577,353	+		Sama_3004	0.20	+0.3
3,577,353	+		Sama_3004	0.20	-0.1
3,577,353	+		Sama_3004	0.20	+3.0
3,577,353	+		Sama_3004	0.20	-1.5
3,577,354	-		Sama_3004	0.21	+1.9
3,577,354	-		Sama_3004	0.21	+2.4
3,577,356	+		Sama_3004	0.21	+2.0
3,577,356	+		Sama_3004	0.21	+0.3
3,577,357	-		Sama_3004	0.21	-0.3
3,577,357	-		Sama_3004	0.21	-2.6
3,577,357	-		Sama_3004	0.21	+1.3
3,577,357	-		Sama_3004	0.21	+1.3
3,577,357	-		Sama_3004	0.21	+1.8
3,577,378	+		Sama_3004	0.24	-0.9
3,577,378	+		Sama_3004	0.24	-0.7
3,577,415	+		Sama_3004	0.30	+1.9
3,577,421	-		Sama_3004	0.31	+4.3
3,577,620	+		Sama_3004	0.62	+2.5
3,577,844	+				+0.7
3,577,878	+				+1.6
3,577,878	+				+1.1
3,577,879	-				+0.3
3,577,942	+				+0.4
3,577,942	+				+0.7
3,577,942	+				-2.8
3,577,942	+				-0.0
3,577,942	+				-1.4
3,577,943	-				-0.2
3,577,943	-				-0.3
3,577,943	-				-0.3
3,577,943	-				+0.6
3,577,943	-				+0.8
3,577,943	-				-0.2
3,577,943	-				+0.9
3,577,943	-				-0.4
3,577,943	-				-0.2
3,577,943	-				+0.4
3,577,943	-				+0.7
3,577,943	-				+0.5
3,577,943	-				+0.8
3,577,943	-				-0.7
3,577,963	-				-0.3
3,577,975	+				+0.2
3,577,975	+				-1.5
3,577,975	+				-1.9
3,577,975	+				+0.3
3,577,975	+				-1.3
3,577,975	+				-0.5
3,577,975	+				+0.4
3,577,975	+				-1.9
3,577,975	+				-0.6
3,577,976	-				-0.8
3,577,976	-				+0.4
3,577,976	-				+0.8
3,577,976	-				+0.7
3,577,976	-				+0.5
3,577,976	-				-1.1
3,577,976	-				+2.7
3,578,031	-		Sama_3005	0.26	+0.2
3,578,081	-		Sama_3005	0.40	+0.6
3,578,193	+		Sama_3005	0.72	-0.4
3,578,194	-		Sama_3005	0.73	+0.3
3,578,194	-		Sama_3005	0.73	+0.0
3,578,279	-				+0.3
3,578,354	-		Sama_3006	0.13	+0.6
3,578,360	+		Sama_3006	0.14	-0.2
3,578,379	+		Sama_3006	0.16	+0.7
3,578,400	+		Sama_3006	0.20	+1.7
3,578,401	-		Sama_3006	0.20	-0.7
3,578,468	+		Sama_3006	0.30	+1.3
3,578,483	+		Sama_3006	0.32	-0.4
3,578,483	+		Sama_3006	0.32	-0.4
3,578,559	+		Sama_3006	0.43	+0.8
3,578,559	+		Sama_3006	0.43	-0.8
3,578,559	+		Sama_3006	0.43	+1.5
3,578,559	+		Sama_3006	0.43	+1.5
3,578,560	-		Sama_3006	0.43	-0.2
3,578,560	-		Sama_3006	0.43	-1.6
3,578,560	-		Sama_3006	0.43	+2.6
3,578,560	-		Sama_3006	0.43	+1.0
3,578,568	-		Sama_3006	0.44	+0.8
3,578,568	-		Sama_3006	0.44	-0.5
3,578,568	-		Sama_3006	0.44	+0.8
3,578,614	+		Sama_3006	0.51	+0.4
3,578,615	-		Sama_3006	0.51	-0.1
3,578,661	+		Sama_3006	0.58	+0.3
3,578,662	-		Sama_3006	0.58	-1.1
3,578,674	+		Sama_3006	0.60	-2.0
3,578,675	-		Sama_3006	0.60	-1.5
3,578,765	-		Sama_3006	0.74	-0.6
3,578,811	+		Sama_3006	0.80	-0.2
3,578,812	-		Sama_3006	0.81	-0.7
3,578,812	-		Sama_3006	0.81	-0.0
3,578,853	+		Sama_3006	0.87	-0.4
3,578,854	-		Sama_3006	0.87	+1.1
3,578,916	+				-0.8
3,578,916	+				-0.4
3,578,916	+				+1.0
3,578,916	+				+0.1
3,578,916	+				+0.8
3,578,917	-				-0.1
3,578,917	-				-0.7
3,578,917	-				+0.5
3,578,917	-				-2.4
3,578,917	-				+0.5
3,578,918	+				-2.2
3,578,918	+				-0.7
3,578,918	+				-0.1
3,578,918	+				+0.4
3,578,918	+				-1.7
3,578,918	+				+0.9
3,578,918	+				-0.3
3,578,918	+				-0.1
3,578,918	+				-0.1
3,578,918	+				-1.6
3,578,918	+				-0.5
3,578,918	+				+1.0
3,578,919	-				-2.2
3,578,919	-				-1.8
3,578,919	-				-0.5
3,578,919	-				-2.1
3,578,919	-				-0.3
3,578,919	-				+0.9
3,578,919	-				+1.2
3,578,919	-				+0.4
3,578,919	-				-0.3
3,578,919	-				-2.1
3,578,988	+				-2.8
3,578,989	-				-2.2
3,578,989	-				-0.9
3,578,998	+				-1.1
3,578,998	+				-1.9
3,578,999	-				-1.5
3,578,999	-				-0.8
3,578,999	-				-1.1
3,579,059	-				-0.3
3,579,059	-				-1.8
3,579,059	-				-1.0
3,579,126	+		Sama_3007	0.14	-3.2
3,579,126	+		Sama_3007	0.14	+2.3
3,579,127	-		Sama_3007	0.14	-2.3
3,579,127	-		Sama_3007	0.14	-0.9
3,579,152	+		Sama_3007	0.16	-1.5
3,579,153	-		Sama_3007	0.16	-2.1
3,579,153	-		Sama_3007	0.16	-1.1
3,579,164	+		Sama_3007	0.17	-1.7
3,579,164	+		Sama_3007	0.17	-0.7
3,579,177	-		Sama_3007	0.18	-0.2
3,579,179	+		Sama_3007	0.18	-0.3
3,579,180	-		Sama_3007	0.18	-0.8
3,579,180	-		Sama_3007	0.18	-1.5
3,579,180	-		Sama_3007	0.18	-1.8
3,579,328	-		Sama_3007	0.29	-1.1
3,579,328	-		Sama_3007	0.29	-2.3
3,579,382	+		Sama_3007	0.33	-3.7
3,579,383	-		Sama_3007	0.33	+0.2
3,579,397	-		Sama_3007	0.34	-1.9
3,579,410	+		Sama_3007	0.35	-3.1
3,579,410	+		Sama_3007	0.35	-1.7
3,579,410	+		Sama_3007	0.35	-1.9
3,579,410	+		Sama_3007	0.35	-2.7
3,579,410	+		Sama_3007	0.35	-0.3
3,579,411	-		Sama_3007	0.35	-1.2
3,579,411	-		Sama_3007	0.35	-0.7
3,579,411	-		Sama_3007	0.35	-1.3
3,579,411	-		Sama_3007	0.35	-3.2
3,579,456	+		Sama_3007	0.39	-0.9
3,579,457	-		Sama_3007	0.39	-2.6
3,579,475	-		Sama_3007	0.40	-2.8
3,579,475	-		Sama_3007	0.40	-1.1
3,579,508	+		Sama_3007	0.43	-1.3
3,579,528	+		Sama_3007	0.44	-1.5
3,579,529	-		Sama_3007	0.44	-0.2
3,579,529	-		Sama_3007	0.44	-1.2
3,579,599	+		Sama_3007	0.49	-2.3
3,579,599	+		Sama_3007	0.49	-0.6
3,579,599	+		Sama_3007	0.49	-2.6
3,579,599	+		Sama_3007	0.49	-1.0
3,579,599	+		Sama_3007	0.49	+0.5
3,579,600	-		Sama_3007	0.49	-2.1
3,579,600	-		Sama_3007	0.49	-1.3
3,579,600	-		Sama_3007	0.49	+0.7
3,579,600	-		Sama_3007	0.49	-1.4
3,579,609	+		Sama_3007	0.50	-2.5
3,579,609	+		Sama_3007	0.50	-0.5
3,579,610	-		Sama_3007	0.50	-1.1
3,579,617	+		Sama_3007	0.51	-2.3
3,579,618	-		Sama_3007	0.51	-0.1
3,579,658	+		Sama_3007	0.54	-1.3
3,579,659	-		Sama_3007	0.54	-3.5
3,579,663	+		Sama_3007	0.54	-3.1
3,579,663	+		Sama_3007	0.54	-3.3
3,579,663	+		Sama_3007	0.54	-3.4
3,579,663	+		Sama_3007	0.54	-3.2
3,579,664	-		Sama_3007	0.54	-0.8
3,579,664	-		Sama_3007	0.54	-1.2
3,579,664	-		Sama_3007	0.54	-2.6
3,579,820	+		Sama_3007	0.66	-1.7
3,579,821	-		Sama_3007	0.66	-0.1
3,579,821	-		Sama_3007	0.66	-2.1
3,579,821	-		Sama_3007	0.66	-2.4
3,579,821	-		Sama_3007	0.66	-1.5
3,579,904	+		Sama_3007	0.72	-0.7
3,579,905	-		Sama_3007	0.72	-1.1