Strain Fitness in Shewanella amazonensis SB2B around Sama_2898

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,444,444	+		Sama_2897	0.45	-2.3
3,444,444	+		Sama_2897	0.45	+1.3
3,444,444	+		Sama_2897	0.45	-1.0
3,444,444	+		Sama_2897	0.45	-0.8
3,444,444	+		Sama_2897	0.45	-0.8
3,444,445	-		Sama_2897	0.45	-2.6
3,444,445	-		Sama_2897	0.45	+0.1
3,444,445	-		Sama_2897	0.45	-0.5
3,444,445	-		Sama_2897	0.45	-0.5
3,444,445	-		Sama_2897	0.45	-1.5
3,444,445	-		Sama_2897	0.45	-2.0
3,444,445	-		Sama_2897	0.45	+1.7
3,444,445	-		Sama_2897	0.45	+0.9
3,444,445	-		Sama_2897	0.45	-0.0
3,444,445	-		Sama_2897	0.45	-0.9
3,444,445	-		Sama_2897	0.45	+0.1
3,444,445	-		Sama_2897	0.45	+0.2
3,444,445	-		Sama_2897	0.45	-1.4
3,444,445	-		Sama_2897	0.45	-0.6
3,444,445	-		Sama_2897	0.45	-0.1
3,444,496	+		Sama_2897	0.48	+1.8
3,444,518	+		Sama_2897	0.50	+0.1
3,444,518	+		Sama_2897	0.50	+1.4
3,444,519	-		Sama_2897	0.50	-0.8
3,444,519	-		Sama_2897	0.50	+0.5
3,444,533	-		Sama_2897	0.51	-2.5
3,444,549	+		Sama_2897	0.52	-0.7
3,444,550	-		Sama_2897	0.52	+1.2
3,444,550	-		Sama_2897	0.52	-2.3
3,444,726	+		Sama_2897	0.63	-3.1
3,444,727	-		Sama_2897	0.63	-0.1
3,444,760	+		Sama_2897	0.65	-0.4
3,444,760	+		Sama_2897	0.65	+0.6
3,444,761	-		Sama_2897	0.65	-0.7
3,444,793	+		Sama_2897	0.67	+1.8
3,444,793	+		Sama_2897	0.67	-0.7
3,444,793	+		Sama_2897	0.67	-0.8
3,444,794	-		Sama_2897	0.67	-0.7
3,444,794	-		Sama_2897	0.67	+0.8
3,444,794	-		Sama_2897	0.67	-0.9
3,444,794	-		Sama_2897	0.67	-0.1
3,444,794	-		Sama_2897	0.67	+0.7
3,444,794	-		Sama_2897	0.67	+0.1
3,444,794	-		Sama_2897	0.67	+0.5
3,444,794	-		Sama_2897	0.67	-2.1
3,444,794	-		Sama_2897	0.67	+1.9
3,444,794	-		Sama_2897	0.67	-0.9
3,444,937	+		Sama_2897	0.76	+0.4
3,444,971	+		Sama_2897	0.78	-2.1
3,444,971	+		Sama_2897	0.78	-0.0
3,444,971	+		Sama_2897	0.78	+1.0
3,444,971	+		Sama_2897	0.78	+0.4
3,444,971	+		Sama_2897	0.78	-0.4
3,445,009	+		Sama_2897	0.80	+0.2
3,445,009	+		Sama_2897	0.80	+0.3
3,445,009	+		Sama_2897	0.80	+0.2
3,445,009	+		Sama_2897	0.80	+1.1
3,445,010	-		Sama_2897	0.80	+0.6
3,445,010	-		Sama_2897	0.80	+0.7
3,445,031	+		Sama_2897	0.82	+0.6
3,445,032	-		Sama_2897	0.82	-0.6
3,445,046	+		Sama_2897	0.83	-0.8
3,445,046	+		Sama_2897	0.83	+0.7
3,445,046	+		Sama_2897	0.83	+0.2
3,445,046	+		Sama_2897	0.83	+0.1
3,445,046	+		Sama_2897	0.83	-0.9
3,445,046	+		Sama_2897	0.83	+2.0
3,445,053	+		Sama_2897	0.83	-1.0
3,445,054	-		Sama_2897	0.83	-1.3
3,445,178	-				+1.3
3,445,236	+				-1.5
3,445,236	+				-0.5
3,445,382	+				+0.2
3,445,383	-				-1.4
3,445,383	-				+0.4
3,445,424	+				-0.2
3,445,425	-				-2.6
3,445,425	-				+1.2
3,445,511	-				-2.6
3,445,547	-				+0.2
3,445,557	+				+0.3
3,445,557	+				-0.4
3,445,558	-				+0.3
3,445,580	+		Sama_2898	0.11	+0.3
3,445,580	+		Sama_2898	0.11	+0.6
3,445,580	+		Sama_2898	0.11	+1.1
3,445,580	+		Sama_2898	0.11	+0.9
3,445,580	+		Sama_2898	0.11	+0.9
3,445,580	+		Sama_2898	0.11	-2.6
3,445,580	+		Sama_2898	0.11	-0.5
3,445,580	+		Sama_2898	0.11	-0.1
3,445,580	+		Sama_2898	0.11	-0.4
3,445,581	-		Sama_2898	0.11	-0.8
3,445,581	-		Sama_2898	0.11	+0.3
3,445,581	-		Sama_2898	0.11	-1.6
3,445,581	-		Sama_2898	0.11	-0.1
3,445,581	-		Sama_2898	0.11	+0.6
3,445,581	-		Sama_2898	0.11	-0.8
3,445,581	-		Sama_2898	0.11	+0.2
3,445,581	-		Sama_2898	0.11	+0.4
3,445,581	-		Sama_2898	0.11	+0.4
3,445,584	+		Sama_2898	0.11	-0.1
3,445,584	+		Sama_2898	0.11	-1.5
3,445,584	+		Sama_2898	0.11	-2.0
3,445,584	+		Sama_2898	0.11	+0.4
3,445,584	+		Sama_2898	0.11	+0.7
3,445,584	+		Sama_2898	0.11	+1.3
3,445,584	+		Sama_2898	0.11	+0.1
3,445,584	+		Sama_2898	0.11	+1.6
3,445,585	-		Sama_2898	0.11	-0.1
3,445,585	-		Sama_2898	0.11	-1.3
3,445,585	-		Sama_2898	0.11	-0.2
3,445,585	-		Sama_2898	0.11	+0.1
3,445,585	-		Sama_2898	0.11	-0.8
3,445,585	-		Sama_2898	0.11	-0.8
3,445,585	-		Sama_2898	0.11	-2.0
3,445,585	-		Sama_2898	0.11	+0.1
3,445,585	-		Sama_2898	0.11	-1.6
3,445,585	-		Sama_2898	0.11	-0.0
3,445,585	-		Sama_2898	0.11	+0.9
3,445,585	-		Sama_2898	0.11	-1.9
3,445,585	-		Sama_2898	0.11	-0.2
3,445,585	-		Sama_2898	0.11	-0.0
3,445,637	-		Sama_2898	0.15	-0.7
3,445,637	-		Sama_2898	0.15	-0.3
3,445,637	-		Sama_2898	0.15	+0.7
3,445,637	-		Sama_2898	0.15	-1.5
3,445,670	-		Sama_2898	0.18	-0.1
3,445,752	+		Sama_2898	0.24	-1.4
3,445,757	-		Sama_2898	0.24	-0.0
3,445,757	-		Sama_2898	0.24	+1.4
3,445,767	-		Sama_2898	0.25	+0.6
3,445,767	-		Sama_2898	0.25	+0.4
3,445,816	+		Sama_2898	0.29	-0.5
3,445,816	+		Sama_2898	0.29	-0.5
3,445,817	-		Sama_2898	0.29	-1.0
3,445,914	+		Sama_2898	0.37	-0.0
3,445,915	-		Sama_2898	0.37	-0.3
3,445,982	-		Sama_2898	0.42	-0.5
3,446,035	+		Sama_2898	0.46	-1.8
3,446,035	+		Sama_2898	0.46	+1.2
3,446,036	-		Sama_2898	0.46	-3.5
3,446,036	-		Sama_2898	0.46	+0.2
3,446,090	-		Sama_2898	0.50	-0.8
3,446,090	-		Sama_2898	0.50	-0.9
3,446,108	+		Sama_2898	0.52	+1.0
3,446,108	+		Sama_2898	0.52	-0.4
3,446,109	-		Sama_2898	0.52	+1.7
3,446,109	-		Sama_2898	0.52	+0.9
3,446,109	-		Sama_2898	0.52	+0.7
3,446,143	+		Sama_2898	0.54	-0.1
3,446,269	+		Sama_2898	0.64	+1.3
3,446,269	+		Sama_2898	0.64	+1.5
3,446,281	+		Sama_2898	0.65	-2.3
3,446,282	-		Sama_2898	0.65	+0.9
3,446,291	+		Sama_2898	0.66	-0.0
3,446,291	+		Sama_2898	0.66	-0.4
3,446,292	-		Sama_2898	0.66	+1.3
3,446,292	-		Sama_2898	0.66	+0.2
3,446,292	-		Sama_2898	0.66	+0.3
3,446,292	-		Sama_2898	0.66	+0.4
3,446,296	+		Sama_2898	0.66	-0.1
3,446,296	+		Sama_2898	0.66	-0.2
3,446,296	+		Sama_2898	0.66	-0.5
3,446,338	+		Sama_2898	0.70	-0.0
3,446,338	+		Sama_2898	0.70	-3.2
3,446,339	-		Sama_2898	0.70	-0.1
3,446,384	+		Sama_2898	0.73	-0.3
3,446,384	+		Sama_2898	0.73	+0.2
3,446,385	-		Sama_2898	0.73	-0.8
3,446,385	-		Sama_2898	0.73	+0.9
3,446,385	-		Sama_2898	0.73	-0.0
3,446,385	-		Sama_2898	0.73	+2.0
3,446,430	-		Sama_2898	0.77	+1.2
3,446,454	+		Sama_2898	0.79	+0.0
3,446,454	+		Sama_2898	0.79	+1.0
3,446,455	-		Sama_2898	0.79	-2.0
3,446,455	-		Sama_2898	0.79	-0.5
3,446,455	-		Sama_2898	0.79	+0.5
3,446,505	+		Sama_2898	0.83	-0.8
3,446,566	+		Sama_2898	0.87	-0.0
3,446,570	+		Sama_2898	0.88	-0.8
3,446,571	-		Sama_2898	0.88	-0.0
3,446,577	-		Sama_2898	0.88	-0.1
3,446,635	+				+1.0
3,446,715	+				+1.2
3,446,715	+				-0.4
3,446,715	+				-0.6
3,446,715	+				-2.1
3,446,715	+				+0.5
3,446,715	+				-0.5
3,446,761	-				-0.8
3,446,762	+				+0.2
3,446,762	+				+0.8
3,446,763	-				-2.1
3,446,763	-				-0.2
3,446,769	+				+0.5
3,446,769	+				-0.1
3,446,770	-				+0.7
3,446,770	-				-2.0
3,446,838	+				+0.6
3,446,838	+				-0.1
3,446,839	-				+1.2
3,446,839	-				+0.5
3,446,839	-				-0.8
3,446,839	-				+0.5
3,446,839	-				+0.2
3,446,854	+				+0.9
3,446,854	+				-0.3
3,446,895	-				+0.1
3,446,911	-				-0.0
3,446,911	-				-0.5
3,446,972	+				-0.4
3,446,973	-				-2.1
3,446,973	-				-1.4
3,446,991	+				-0.3
3,447,000	-				+0.4
3,447,031	-				+0.1
3,447,031	-				+0.8
3,447,086	+				-0.2
3,447,086	+				+2.1
3,447,087	-				+1.2
3,447,099	+				+0.4
3,447,099	+				-1.1
3,447,099	+				+0.7
3,447,099	+				-0.6
3,447,100	-				+2.0
3,447,121	+				-2.1
3,447,153	+				+1.2
3,447,154	-				-1.7
3,447,154	-				-0.6
3,447,159	-				-0.8
3,447,192	-				+1.2
3,447,192	-				-3.0
3,447,192	-				-0.9
3,447,304	-		Sama_2899	0.18	-1.1
3,447,326	-		Sama_2899	0.20	-0.7
3,447,339	+		Sama_2899	0.22	+0.2
3,447,339	+		Sama_2899	0.22	-0.1
3,447,339	+		Sama_2899	0.22	-0.1
3,447,339	+		Sama_2899	0.22	+0.3
3,447,358	+		Sama_2899	0.24	+0.3
3,447,358	+		Sama_2899	0.24	-1.4
3,447,369	+		Sama_2899	0.25	-1.0
3,447,369	+		Sama_2899	0.25	+0.1
3,447,370	-		Sama_2899	0.25	+0.4
3,447,370	-		Sama_2899	0.25	+1.7
3,447,379	+		Sama_2899	0.26	+0.5
3,447,394	+		Sama_2899	0.27	-0.3
3,447,394	+		Sama_2899	0.27	-0.9
3,447,394	+		Sama_2899	0.27	+1.2
3,447,395	-		Sama_2899	0.27	+0.3
3,447,395	-		Sama_2899	0.27	+0.7
3,447,395	-		Sama_2899	0.27	-0.7
3,447,395	-		Sama_2899	0.27	+0.3
3,447,415	-		Sama_2899	0.29	+1.2
3,447,435	+		Sama_2899	0.31	+1.1
3,447,435	+		Sama_2899	0.31	-0.0
3,447,435	+		Sama_2899	0.31	+0.2
3,447,435	+		Sama_2899	0.31	+1.5
3,447,435	+		Sama_2899	0.31	-0.1
3,447,435	+		Sama_2899	0.31	-0.2
3,447,436	-		Sama_2899	0.32	-0.4
3,447,436	-		Sama_2899	0.32	+0.8
3,447,436	-		Sama_2899	0.32	-0.8
3,447,436	-		Sama_2899	0.32	+0.6
3,447,436	-		Sama_2899	0.32	-1.6
3,447,473	+		Sama_2899	0.35	+0.5
3,447,474	-		Sama_2899	0.35	-0.0
3,447,474	-		Sama_2899	0.35	-1.1
3,447,474	-		Sama_2899	0.35	-1.3
3,447,474	-		Sama_2899	0.35	-2.7
3,447,509	+		Sama_2899	0.39	-0.0
3,447,509	+		Sama_2899	0.39	-0.5
3,447,509	+		Sama_2899	0.39	-1.3
3,447,509	+		Sama_2899	0.39	+0.0
3,447,509	+		Sama_2899	0.39	+0.2
3,447,509	+		Sama_2899	0.39	+0.9
3,447,510	-		Sama_2899	0.39	+0.6
3,447,510	-		Sama_2899	0.39	-0.1
3,447,512	+		Sama_2899	0.39	-1.9
3,447,512	+		Sama_2899	0.39	+1.3
3,447,513	-		Sama_2899	0.39	-0.8
3,447,513	-		Sama_2899	0.39	-0.2
3,447,572	+		Sama_2899	0.45	+0.6
3,447,573	-		Sama_2899	0.45	+0.2
3,447,590	+		Sama_2899	0.47	-1.6
3,447,590	+		Sama_2899	0.47	+0.0
3,447,591	-		Sama_2899	0.47	+1.1
3,447,591	-		Sama_2899	0.47	-0.6
3,447,591	-		Sama_2899	0.47	-0.0
3,447,591	-		Sama_2899	0.47	-1.3
3,447,615	-		Sama_2899	0.50	+0.8
3,447,615	-		Sama_2899	0.50	-0.5
3,447,615	-		Sama_2899	0.50	-0.8
3,447,626	+		Sama_2899	0.51	+1.2
3,447,665	+		Sama_2899	0.55	-0.7
3,447,665	+		Sama_2899	0.55	-1.8
3,447,665	+		Sama_2899	0.55	-1.8
3,447,665	+		Sama_2899	0.55	-0.4
3,447,670	+		Sama_2899	0.55	+1.2
3,447,670	+		Sama_2899	0.55	-0.1
3,447,671	-		Sama_2899	0.55	+0.3
3,447,689	-		Sama_2899	0.57	+0.4
3,447,701	+		Sama_2899	0.58	-0.2
3,447,701	+		Sama_2899	0.58	-0.7
3,447,701	+		Sama_2899	0.58	-0.6
3,447,701	+		Sama_2899	0.58	+0.5
3,447,701	+		Sama_2899	0.58	-0.4
3,447,701	+		Sama_2899	0.58	-2.3
3,447,702	-		Sama_2899	0.59	-2.6
3,447,702	-		Sama_2899	0.59	-0.2
3,447,702	-		Sama_2899	0.59	+0.7
3,447,702	-		Sama_2899	0.59	-1.1
3,447,705	+		Sama_2899	0.59	+0.6
3,447,705	+		Sama_2899	0.59	+0.2
3,447,705	+		Sama_2899	0.59	-1.8
3,447,705	+		Sama_2899	0.59	-0.0
3,447,706	-		Sama_2899	0.59	+1.3
3,447,706	-		Sama_2899	0.59	+0.6
3,447,706	-		Sama_2899	0.59	+0.8
3,447,706	-		Sama_2899	0.59	+0.8
3,447,721	+		Sama_2899	0.60	-0.9
3,447,722	-		Sama_2899	0.61	-0.4
3,447,722	-		Sama_2899	0.61	+0.3