Strain Fitness in Shewanella amazonensis SB2B around Sama_2775

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
3,316,601	+				+1.0
3,316,601	+				-1.5
3,316,647	+				+0.2
3,316,668	+				+1.8
3,316,668	+				+2.2
3,316,668	+				+0.5
3,316,669	-				+0.0
3,316,669	-				-0.8
3,316,669	-				+0.6
3,316,669	-				-1.1
3,316,669	-				-4.1
3,316,671	+				-1.1
3,316,671	+				+1.0
3,316,671	+				-0.3
3,316,672	-				+0.4
3,316,672	-				+1.8
3,316,672	-				-1.2
3,316,680	+				-0.6
3,316,680	+				-2.2
3,316,681	-				-0.5
3,316,713	-				+0.4
3,316,748	+				-0.7
3,316,748	+				-2.0
3,316,748	+				+0.7
3,316,748	+				+0.5
3,316,748	+				+0.8
3,316,748	+				+0.1
3,316,748	+				+0.1
3,316,748	+				+1.1
3,316,748	+				-0.0
3,316,748	+				+0.1
3,316,748	+				-3.1
3,316,748	+				+0.0
3,316,748	+				-0.1
3,316,748	+				+1.5
3,316,748	+				+1.0
3,316,748	+				-1.0
3,316,748	+				-0.9
3,316,749	+				+0.6
3,316,749	-				-1.5
3,316,749	-				+0.6
3,316,749	-				-1.0
3,316,749	-				-0.4
3,316,749	-				-0.8
3,316,749	-				-0.3
3,316,749	-				+0.7
3,316,749	-				-0.4
3,316,749	-				+0.3
3,316,749	-				-0.4
3,316,749	-				-0.5
3,316,749	-				-0.7
3,316,749	-				+1.6
3,316,749	-				+0.3
3,316,749	-				-0.4
3,316,749	-				-1.8
3,316,749	-				+0.9
3,316,798	+				+0.7
3,316,799	-				+0.2
3,316,836	-				-0.4
3,316,891	-				+0.2
3,316,927	+		Sama_2774	0.12	-0.1
3,316,927	+		Sama_2774	0.12	-0.1
3,316,927	+		Sama_2774	0.12	-0.1
3,316,928	-		Sama_2774	0.12	+0.5
3,316,967	+		Sama_2774	0.19	-1.5
3,316,968	-		Sama_2774	0.19	+0.6
3,317,035	+		Sama_2774	0.31	+1.4
3,317,035	+		Sama_2774	0.31	-0.3
3,317,105	+		Sama_2774	0.43	+0.5
3,317,105	+		Sama_2774	0.43	+0.8
3,317,105	+		Sama_2774	0.43	-1.1
3,317,105	+		Sama_2774	0.43	-0.6
3,317,105	+		Sama_2774	0.43	+1.0
3,317,105	+		Sama_2774	0.43	-1.7
3,317,106	-		Sama_2774	0.43	+1.4
3,317,106	-		Sama_2774	0.43	+0.3
3,317,106	-		Sama_2774	0.43	+0.1
3,317,106	-		Sama_2774	0.43	-1.7
3,317,106	-		Sama_2774	0.43	-2.4
3,317,106	-		Sama_2774	0.43	-0.0
3,317,106	-		Sama_2774	0.43	-0.9
3,317,106	-		Sama_2774	0.43	+0.5
3,317,106	-		Sama_2774	0.43	-0.9
3,317,106	-		Sama_2774	0.43	-2.1
3,317,108	-		Sama_2774	0.44	-0.5
3,317,108	-		Sama_2774	0.44	+1.2
3,317,162	+		Sama_2774	0.53	+0.1
3,317,162	+		Sama_2774	0.53	+0.8
3,317,162	+		Sama_2774	0.53	+0.2
3,317,162	+		Sama_2774	0.53	+0.1
3,317,162	+		Sama_2774	0.53	+0.0
3,317,163	-		Sama_2774	0.53	-0.2
3,317,163	-		Sama_2774	0.53	-0.0
3,317,163	-		Sama_2774	0.53	+2.1
3,317,163	-		Sama_2774	0.53	-0.7
3,317,163	-		Sama_2774	0.53	-0.7
3,317,166	+		Sama_2774	0.54	-1.2
3,317,166	+		Sama_2774	0.54	+1.1
3,317,167	-		Sama_2774	0.54	+1.2
3,317,167	-		Sama_2774	0.54	-0.2
3,317,172	+		Sama_2774	0.55	+0.3
3,317,172	+		Sama_2774	0.55	-1.3
3,317,172	+		Sama_2774	0.55	-0.5
3,317,172	+		Sama_2774	0.55	-1.7
3,317,172	+		Sama_2774	0.55	+0.6
3,317,173	-		Sama_2774	0.55	-0.5
3,317,173	-		Sama_2774	0.55	+0.3
3,317,173	-		Sama_2774	0.55	-0.5
3,317,173	-		Sama_2774	0.55	+0.6
3,317,217	+		Sama_2774	0.63	+1.0
3,317,217	+		Sama_2774	0.63	-0.1
3,317,217	+		Sama_2774	0.63	+0.5
3,317,218	-		Sama_2774	0.63	-1.4
3,317,218	-		Sama_2774	0.63	-1.1
3,317,237	+		Sama_2774	0.66	+1.1
3,317,238	-		Sama_2774	0.67	-0.3
3,317,238	-		Sama_2774	0.67	-0.2
3,317,238	-		Sama_2774	0.67	-0.2
3,317,238	-		Sama_2774	0.67	-2.2
3,317,293	+		Sama_2774	0.76	+0.6
3,317,293	+		Sama_2774	0.76	-2.7
3,317,293	+		Sama_2774	0.76	+0.8
3,317,293	+		Sama_2774	0.76	+0.6
3,317,294	-		Sama_2774	0.77	+1.1
3,317,294	-		Sama_2774	0.77	+1.1
3,317,331	+		Sama_2774	0.83	+1.2
3,317,366	+		Sama_2774	0.89	-0.7
3,317,566	+				-3.1
3,317,567	-				-1.1
3,317,612	-		Sama_2775	0.12	-1.0
3,317,683	+		Sama_2775	0.20	-2.2
3,317,683	+		Sama_2775	0.20	-1.5
3,317,683	+		Sama_2775	0.20	-2.0
3,317,847	+		Sama_2775	0.37	-2.5
3,317,847	+		Sama_2775	0.37	-1.3
3,317,847	+		Sama_2775	0.37	-0.9
3,317,848	-		Sama_2775	0.37	-1.8
3,317,848	-		Sama_2775	0.37	-1.2
3,317,848	-		Sama_2775	0.37	-1.8
3,317,848	-		Sama_2775	0.37	-3.0
3,317,848	-		Sama_2775	0.37	-0.5
3,317,848	-		Sama_2775	0.37	-1.3
3,317,848	-		Sama_2775	0.37	-0.7
3,317,860	+		Sama_2775	0.38	-1.0
3,317,860	+		Sama_2775	0.38	+0.7
3,317,861	-		Sama_2775	0.39	-2.3
3,317,861	-		Sama_2775	0.39	-0.7
3,317,861	-		Sama_2775	0.39	-0.0
3,317,929	+		Sama_2775	0.46	+0.5
3,317,929	+		Sama_2775	0.46	-1.2
3,317,929	+		Sama_2775	0.46	-1.5
3,317,930	-		Sama_2775	0.46	-1.4
3,317,930	-		Sama_2775	0.46	-1.5
3,317,930	-		Sama_2775	0.46	+0.8
3,317,930	-		Sama_2775	0.46	-2.5
3,317,972	+		Sama_2775	0.50	-1.5
3,317,973	-		Sama_2775	0.50	-1.3
3,318,027	+		Sama_2775	0.56	-1.3
3,318,027	+		Sama_2775	0.56	-0.1
3,318,051	+		Sama_2775	0.59	-1.8
3,318,093	+		Sama_2775	0.63	+1.1
3,318,093	+		Sama_2775	0.63	-0.2
3,318,093	+		Sama_2775	0.63	-1.9
3,318,093	+		Sama_2775	0.63	-2.5
3,318,093	+		Sama_2775	0.63	-1.3
3,318,093	+		Sama_2775	0.63	-1.8
3,318,093	+		Sama_2775	0.63	+0.1
3,318,093	+		Sama_2775	0.63	-2.9
3,318,093	+		Sama_2775	0.63	+0.1
3,318,094	-		Sama_2775	0.63	-3.6
3,318,114	+		Sama_2775	0.65	-2.1
3,318,289	-		Sama_2775	0.84	-1.3
3,318,300	+		Sama_2775	0.85	-1.2
3,318,300	+		Sama_2775	0.85	-1.6
3,318,301	-		Sama_2775	0.85	-1.9
3,318,343	-		Sama_2775	0.90	-1.4
3,318,419	+				+2.8
3,318,419	+				+4.8
3,318,420	-				+4.7
3,318,485	+				+0.1
3,318,485	+				+0.9
3,318,485	+				-0.8
3,318,501	+				-1.7
3,318,501	+				-0.3
3,318,502	-				-0.8
3,318,502	-				+0.2
3,318,515	+				-0.2
3,318,522	+				+0.9
3,318,522	+				+0.5
3,318,522	+				-1.4
3,318,523	-				-1.0
3,318,525	+				+0.3
3,318,525	+				-1.0
3,318,525	+				+0.4
3,318,525	+				+1.1
3,318,525	+				-2.2
3,318,526	-				-0.2
3,318,550	-				-2.4
3,318,624	-				-1.2
3,318,624	-				-1.2
3,318,624	-				-0.4
3,318,655	-		Sama_2776	0.11	-2.2
3,318,681	-		Sama_2776	0.13	+0.6
3,318,699	+		Sama_2776	0.15	-0.0
3,318,699	+		Sama_2776	0.15	-0.9
3,318,699	+		Sama_2776	0.15	+0.1
3,318,700	-		Sama_2776	0.15	+0.1
3,318,756	+		Sama_2776	0.21	+0.1
3,318,756	+		Sama_2776	0.21	-2.9
3,318,756	+		Sama_2776	0.21	-0.7
3,318,756	+		Sama_2776	0.21	+0.0
3,318,757	-		Sama_2776	0.21	+0.9
3,318,757	-		Sama_2776	0.21	+0.8
3,318,762	-		Sama_2776	0.21	-0.5
3,318,762	-		Sama_2776	0.21	-0.7
3,318,831	+		Sama_2776	0.28	-0.6
3,318,831	+		Sama_2776	0.28	-1.2
3,318,831	+		Sama_2776	0.28	+1.4
3,318,831	+		Sama_2776	0.28	+0.8
3,318,831	+		Sama_2776	0.28	+1.4
3,318,832	-		Sama_2776	0.28	+0.3
3,318,832	-		Sama_2776	0.28	+1.6
3,318,833	+		Sama_2776	0.28	+1.0
3,318,834	-		Sama_2776	0.28	+0.6
3,318,893	-		Sama_2776	0.34	-0.8
3,318,908	-		Sama_2776	0.35	-2.0
3,318,908	-		Sama_2776	0.35	-0.2
3,318,908	-		Sama_2776	0.35	-0.2
3,318,908	-		Sama_2776	0.35	+0.8
3,318,908	-		Sama_2776	0.35	-1.1
3,318,908	-		Sama_2776	0.35	+0.4
3,318,908	-		Sama_2776	0.35	-0.0
3,318,924	+		Sama_2776	0.37	+0.2
3,318,925	-		Sama_2776	0.37	+0.5
3,318,925	-		Sama_2776	0.37	-0.6
3,318,925	-		Sama_2776	0.37	+0.6
3,318,925	-		Sama_2776	0.37	-1.8
3,318,947	-		Sama_2776	0.39	-0.6
3,318,975	+		Sama_2776	0.42	-1.4
3,318,975	+		Sama_2776	0.42	-0.1
3,318,975	+		Sama_2776	0.42	+1.9
3,318,975	+		Sama_2776	0.42	-0.6
3,318,975	+		Sama_2776	0.42	+0.1
3,318,975	+		Sama_2776	0.42	-1.1
3,318,975	+		Sama_2776	0.42	-2.3
3,318,976	-		Sama_2776	0.42	+0.4
3,318,976	-		Sama_2776	0.42	-0.4
3,319,063	-		Sama_2776	0.50	-0.5
3,319,063	-		Sama_2776	0.50	-1.0
3,319,063	-		Sama_2776	0.50	+0.2
3,319,064	+		Sama_2776	0.50	+1.6
3,319,064	+		Sama_2776	0.50	+1.7
3,319,064	+		Sama_2776	0.50	+0.1
3,319,064	+		Sama_2776	0.50	+0.6
3,319,064	+		Sama_2776	0.50	+1.9
3,319,064	+		Sama_2776	0.50	+0.4
3,319,065	-		Sama_2776	0.50	-1.5
3,319,065	-		Sama_2776	0.50	-1.2
3,319,065	-		Sama_2776	0.50	-1.5
3,319,065	-		Sama_2776	0.50	+0.1
3,319,067	-		Sama_2776	0.50	+1.1
3,319,104	+		Sama_2776	0.54	-3.2
3,319,104	+		Sama_2776	0.54	+0.5
3,319,104	+		Sama_2776	0.54	-1.0
3,319,104	+		Sama_2776	0.54	+0.9
3,319,104	+		Sama_2776	0.54	+1.0
3,319,104	+		Sama_2776	0.54	+1.7
3,319,105	-		Sama_2776	0.54	+0.5
3,319,105	-		Sama_2776	0.54	+0.5
3,319,161	+		Sama_2776	0.60	+1.4
3,319,161	+		Sama_2776	0.60	-0.5
3,319,162	-		Sama_2776	0.60	+2.0
3,319,237	-		Sama_2776	0.67	+0.2
3,319,261	+		Sama_2776	0.69	-2.0
3,319,262	-		Sama_2776	0.69	-0.6
3,319,262	-		Sama_2776	0.69	-3.7
3,319,262	-		Sama_2776	0.69	-0.8
3,319,262	-		Sama_2776	0.69	+0.9
3,319,272	+		Sama_2776	0.70	-1.1
3,319,273	-		Sama_2776	0.70	+0.2
3,319,333	-		Sama_2776	0.76	+0.6
3,319,368	+		Sama_2776	0.79	+0.9
3,319,369	-		Sama_2776	0.80	+0.4
3,319,369	-		Sama_2776	0.80	+0.3
3,319,369	-		Sama_2776	0.80	+0.7
3,319,369	-		Sama_2776	0.80	+0.9
3,319,397	-		Sama_2776	0.82	-0.2
3,319,397	-		Sama_2776	0.82	+1.2
3,319,426	+		Sama_2776	0.85	+0.1
3,319,427	-		Sama_2776	0.85	-0.1
3,319,427	-		Sama_2776	0.85	-0.1
3,319,427	-		Sama_2776	0.85	+0.6