Strain Fitness in Shewanella amazonensis SB2B around Sama_2476

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
2,978,441	+		Sama_2475	0.33	+1.3
2,978,441	+		Sama_2475	0.33	+0.5
2,978,441	+		Sama_2475	0.33	-0.5
2,978,441	+		Sama_2475	0.33	-3.1
2,978,442	-		Sama_2475	0.33	+0.5
2,978,465	+		Sama_2475	0.35	+1.3
2,978,465	+		Sama_2475	0.35	-1.1
2,978,465	+		Sama_2475	0.35	+0.1
2,978,466	-		Sama_2475	0.36	+0.3
2,978,466	-		Sama_2475	0.36	+0.4
2,978,510	+		Sama_2475	0.40	-0.1
2,978,510	+		Sama_2475	0.40	+0.4
2,978,511	-		Sama_2475	0.40	+1.5
2,978,511	-		Sama_2475	0.40	+0.1
2,978,511	-		Sama_2475	0.40	+0.1
2,978,720	+		Sama_2475	0.58	-0.6
2,978,721	-		Sama_2475	0.58	-0.3
2,978,778	-		Sama_2475	0.64	-0.3
2,978,783	+		Sama_2475	0.64	+0.1
2,978,784	-		Sama_2475	0.64	+0.8
2,978,789	+		Sama_2475	0.65	-0.1
2,978,801	+		Sama_2475	0.66	-1.4
2,978,802	-		Sama_2475	0.66	-0.6
2,978,802	-		Sama_2475	0.66	+1.1
2,978,807	+		Sama_2475	0.66	-0.3
2,978,807	+		Sama_2475	0.66	+0.5
2,978,807	+		Sama_2475	0.66	-0.1
2,978,807	+		Sama_2475	0.66	-1.3
2,978,808	-		Sama_2475	0.66	+0.2
2,978,808	-		Sama_2475	0.66	-0.2
2,978,819	+		Sama_2475	0.67	+0.9
2,978,820	-		Sama_2475	0.67	-0.6
2,978,838	-		Sama_2475	0.69	-0.8
2,978,898	+		Sama_2475	0.74	+1.9
2,978,898	+		Sama_2475	0.74	+0.1
2,978,898	+		Sama_2475	0.74	+0.8
2,978,899	-		Sama_2475	0.74	-0.9
2,978,899	-		Sama_2475	0.74	+0.6
2,978,975	+		Sama_2475	0.81	-0.8
2,979,174	+				+1.2
2,979,174	+				-0.6
2,979,174	+				-2.1
2,979,174	+				-0.1
2,979,174	+				-1.1
2,979,175	-				-0.2
2,979,175	-				-1.7
2,979,175	-				+0.5
2,979,175	-				+0.4
2,979,175	-				-0.3
2,979,175	-				-0.4
2,979,175	-				-1.4
2,979,175	-				+0.6
2,979,325	+		Sama_2476	0.13	+1.8
2,979,325	+		Sama_2476	0.13	-1.7
2,979,325	+		Sama_2476	0.13	+0.0
2,979,326	-		Sama_2476	0.13	+0.3
2,979,326	-		Sama_2476	0.13	-1.4
2,979,326	-		Sama_2476	0.13	-1.1
2,979,354	-		Sama_2476	0.16	+2.2
2,979,374	+		Sama_2476	0.18	+0.9
2,979,441	+		Sama_2476	0.24	-1.3
2,979,442	-		Sama_2476	0.24	+0.1
2,979,470	+		Sama_2476	0.27	+0.8
2,979,470	+		Sama_2476	0.27	+0.4
2,979,471	-		Sama_2476	0.27	+0.7
2,979,471	-		Sama_2476	0.27	+2.8
2,979,600	-		Sama_2476	0.39	+0.6
2,979,633	-		Sama_2476	0.42	+1.9
2,979,675	-		Sama_2476	0.47	+1.5
2,979,686	+		Sama_2476	0.48	+1.4
2,979,687	-		Sama_2476	0.48	+1.0
2,979,687	-		Sama_2476	0.48	+1.2
2,979,710	+		Sama_2476	0.50	+0.8
2,979,713	+		Sama_2476	0.50	+0.2
2,979,713	+		Sama_2476	0.50	-1.0
2,979,713	+		Sama_2476	0.50	+0.9
2,979,714	-		Sama_2476	0.50	-0.1
2,979,714	-		Sama_2476	0.50	-0.2
2,979,725	+		Sama_2476	0.51	+0.0
2,979,726	-		Sama_2476	0.51	+1.4
2,979,746	+		Sama_2476	0.53	+1.7
2,979,747	-		Sama_2476	0.53	+1.5
2,979,747	-		Sama_2476	0.53	+0.6
2,979,768	-		Sama_2476	0.55	-0.4
2,979,768	-		Sama_2476	0.55	+0.9
2,979,793	+		Sama_2476	0.58	+1.5
2,979,793	+		Sama_2476	0.58	-1.1
2,979,793	+		Sama_2476	0.58	-0.8
2,979,794	-		Sama_2476	0.58	+0.4
2,979,794	-		Sama_2476	0.58	-1.4
2,979,818	+		Sama_2476	0.60	+1.8
2,979,819	-		Sama_2476	0.60	+0.1
2,979,819	-		Sama_2476	0.60	+0.9
2,979,819	-		Sama_2476	0.60	+0.4
2,979,819	-		Sama_2476	0.60	-1.1
2,979,824	+		Sama_2476	0.61	+0.5
2,979,824	+		Sama_2476	0.61	+0.3
2,979,825	-		Sama_2476	0.61	+1.5
2,979,938	+		Sama_2476	0.72	+1.4
2,979,981	+		Sama_2476	0.76	-0.4
2,979,981	+		Sama_2476	0.76	+1.6
2,979,982	-		Sama_2476	0.76	+1.4
2,980,042	+		Sama_2476	0.82	+0.4
2,980,042	+		Sama_2476	0.82	+0.2
2,980,043	-		Sama_2476	0.82	-0.0
2,980,067	+		Sama_2476	0.84	-0.5
2,980,068	-		Sama_2476	0.84	-1.4
2,980,068	-		Sama_2476	0.84	-0.9
2,980,068	-		Sama_2476	0.84	+1.6
2,980,075	+		Sama_2476	0.85	+1.9
2,980,075	+		Sama_2476	0.85	+1.0
2,980,089	+		Sama_2476	0.86	+0.5
2,980,089	+		Sama_2476	0.86	+1.4
2,980,089	+		Sama_2476	0.86	+4.4
2,980,090	-		Sama_2476	0.87	+0.8
2,980,176	+				+0.7
2,980,176	+				-0.7
2,980,176	+				-0.0
2,980,177	-				+1.6
2,980,177	-				+0.9
2,980,202	+				+2.6
2,980,202	+				-0.7
2,980,203	-				-1.1
2,980,203	-				+1.9
2,980,212	+				+1.0
2,980,213	-				+0.2
2,980,259	+				-0.9
2,980,275	+				-1.7
2,980,276	-				-1.5
2,980,356	+		Sama_2477	0.13	-1.9
2,980,356	+		Sama_2477	0.13	-1.9
2,980,357	-		Sama_2477	0.13	-2.1
2,980,403	+		Sama_2477	0.19	-2.9
2,980,404	-		Sama_2477	0.20	-0.7
2,980,404	-		Sama_2477	0.20	-3.2
2,980,436	+		Sama_2477	0.24	-1.1
2,980,504	+		Sama_2477	0.34	+0.0
2,980,641	+		Sama_2477	0.53	-3.3
2,980,641	+		Sama_2477	0.53	-0.7
2,980,642	-		Sama_2477	0.53	-1.1
2,980,642	-		Sama_2477	0.53	-2.6
2,980,642	-		Sama_2477	0.53	-3.4
2,980,651	+		Sama_2477	0.55	-2.3
2,980,652	-		Sama_2477	0.55	-3.7
2,980,652	-		Sama_2477	0.55	-1.3
2,980,669	+		Sama_2477	0.57	-1.9
2,980,693	+		Sama_2477	0.60	-2.1
2,980,693	+		Sama_2477	0.60	-0.7
2,980,693	+		Sama_2477	0.60	-1.4
2,980,693	+		Sama_2477	0.60	-0.4
2,980,693	+		Sama_2477	0.60	-2.0
2,980,693	+		Sama_2477	0.60	-0.7
2,980,694	-		Sama_2477	0.61	-2.1
2,980,696	+		Sama_2477	0.61	-1.7
2,980,696	+		Sama_2477	0.61	-0.7
2,980,696	+		Sama_2477	0.61	-1.4
2,980,697	-		Sama_2477	0.61	-1.9
2,980,697	-		Sama_2477	0.61	-0.3
2,980,822	+		Sama_2477	0.79	-1.1
2,980,860	+		Sama_2477	0.84	-1.5
2,980,860	+		Sama_2477	0.84	-0.7
2,980,860	+		Sama_2477	0.84	-1.1
2,980,860	+		Sama_2477	0.84	+1.0
2,980,860	+		Sama_2477	0.84	-1.7
2,980,860	+		Sama_2477	0.84	-0.7
2,980,861	-		Sama_2477	0.84	-1.4
2,980,861	-		Sama_2477	0.84	-1.1
2,980,861	-		Sama_2477	0.84	-1.7
2,980,861	-		Sama_2477	0.84	-0.8
2,980,864	+		Sama_2477	0.85	-1.0
2,980,864	+		Sama_2477	0.85	-2.1
2,980,864	+		Sama_2477	0.85	-2.1
2,980,864	+		Sama_2477	0.85	-1.1
2,980,864	+		Sama_2477	0.85	-0.1
2,980,864	+		Sama_2477	0.85	-3.2
2,980,864	+		Sama_2477	0.85	-1.3
2,980,864	+		Sama_2477	0.85	-1.4
2,980,865	-		Sama_2477	0.85	-1.8
2,980,865	-		Sama_2477	0.85	-2.8
2,980,865	-		Sama_2477	0.85	-1.9
2,980,865	-		Sama_2477	0.85	-1.7
2,980,865	-		Sama_2477	0.85	-1.7
2,980,865	-		Sama_2477	0.85	-3.6
2,980,865	-		Sama_2477	0.85	-2.8
2,980,879	+		Sama_2477	0.87	-1.2
2,980,879	+		Sama_2477	0.87	-2.0
2,980,879	+		Sama_2477	0.87	-1.9
2,980,879	+		Sama_2477	0.87	-2.0
2,980,880	-		Sama_2477	0.87	-1.1
2,980,905	+				-1.2
2,980,906	-				+0.1
2,980,906	-				-1.1
2,980,906	-				-1.9
2,980,998	+				+1.4
2,980,999	-				-0.2
2,980,999	-				+0.4
2,981,002	+				+0.5
2,981,003	-				+0.5
2,981,208	+		Sama_2478	0.18	-2.7
2,981,208	+		Sama_2478	0.18	-0.8
2,981,219	+		Sama_2478	0.19	-3.8
2,981,219	+		Sama_2478	0.19	-1.1
2,981,219	+		Sama_2478	0.19	-2.9
2,981,220	-		Sama_2478	0.19	-3.3