Strain Fitness in Shewanella amazonensis SB2B around Sama_2403

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
2,885,804	+		Sama_2401	0.64	-0.9
2,885,888	+		Sama_2401	0.69	+0.5
2,885,971	-		Sama_2401	0.75	+0.8
2,885,971	-		Sama_2401	0.75	-2.8
2,886,014	+		Sama_2401	0.77	-0.6
2,886,015	-		Sama_2401	0.77	-0.5
2,886,043	-		Sama_2401	0.79	+0.2
2,886,043	-		Sama_2401	0.79	-2.8
2,886,044	+		Sama_2401	0.79	-0.2
2,886,045	-		Sama_2401	0.79	-2.5
2,886,045	-		Sama_2401	0.79	-0.1
2,886,083	+		Sama_2401	0.82	+0.6
2,886,133	-		Sama_2401	0.85	+0.6
2,886,162	+		Sama_2401	0.87	-0.9
2,886,162	+		Sama_2401	0.87	+0.4
2,886,162	+		Sama_2401	0.87	-3.6
2,886,162	+		Sama_2401	0.87	-0.3
2,886,163	-		Sama_2401	0.87	+0.5
2,886,163	-		Sama_2401	0.87	-1.6
2,886,163	-		Sama_2401	0.87	-0.1
2,886,163	-		Sama_2401	0.87	-2.2
2,886,178	+		Sama_2401	0.88	-1.1
2,886,181	+		Sama_2401	0.88	+1.0
2,886,182	-		Sama_2401	0.88	+1.6
2,886,182	-		Sama_2401	0.88	-0.9
2,886,182	-		Sama_2401	0.88	+0.5
2,886,240	+				-1.5
2,886,241	-				-0.2
2,886,241	-				-0.2
2,886,241	-				-3.6
2,886,241	-				-0.4
2,886,286	+				+1.0
2,886,436	+		Sama_2402	0.19	-1.2
2,886,436	+		Sama_2402	0.19	+0.4
2,886,436	+		Sama_2402	0.19	+0.6
2,886,436	+		Sama_2402	0.19	-0.4
2,886,437	-		Sama_2402	0.19	+1.3
2,886,437	-		Sama_2402	0.19	+0.1
2,886,437	-		Sama_2402	0.19	+0.5
2,886,437	-		Sama_2402	0.19	-0.4
2,886,437	-		Sama_2402	0.19	-1.5
2,886,437	-		Sama_2402	0.19	+1.0
2,886,437	-		Sama_2402	0.19	+0.3
2,886,443	+		Sama_2402	0.21	-1.8
2,886,444	-		Sama_2402	0.21	+1.3
2,886,480	+		Sama_2402	0.31	-0.5
2,886,480	+		Sama_2402	0.31	-1.0
2,886,480	+		Sama_2402	0.31	+1.6
2,886,480	+		Sama_2402	0.31	+1.2
2,886,480	+		Sama_2402	0.31	+0.1
2,886,481	-		Sama_2402	0.31	+0.3
2,886,484	+		Sama_2402	0.32	+0.6
2,886,484	+		Sama_2402	0.32	+0.6
2,886,484	+		Sama_2402	0.32	-1.6
2,886,485	-		Sama_2402	0.32	+0.7
2,886,485	-		Sama_2402	0.32	+1.0
2,886,571	+		Sama_2402	0.55	-0.9
2,886,571	+		Sama_2402	0.55	+1.4
2,886,571	+		Sama_2402	0.55	-0.7
2,886,572	-		Sama_2402	0.56	-0.3
2,886,572	-		Sama_2402	0.56	-2.2
2,886,693	+		Sama_2402	0.88	+0.2
2,886,744	-				-0.1
2,886,748	+				-2.9
2,886,748	+				-0.1
2,886,748	+				-2.1
2,886,748	+				-0.4
2,886,748	+				+0.6
2,886,748	+				+0.5
2,886,748	+				-1.2
2,886,748	+				-0.2
2,886,748	+				-1.3
2,886,748	+				+0.9
2,886,749	-				+1.6
2,886,749	-				-0.2
2,886,749	-				-2.0
2,886,749	-				+1.8
2,886,749	-				-0.8
2,886,749	-				-2.0
2,886,749	-				+1.6
2,886,749	-				-1.3
2,886,749	-				-1.3
2,886,749	-				+0.6
2,886,749	-				+1.6
2,886,749	-				+0.6
2,886,749	-				-1.3
2,886,774	+				-2.2
2,886,775	-				-0.2
2,886,845	+				-2.2
2,886,846	-				-0.2
2,886,898	+		Sama_2403	0.14	+2.0
2,886,898	+		Sama_2403	0.14	+0.9
2,886,899	-		Sama_2403	0.14	-0.2
2,886,919	+		Sama_2403	0.16	-2.0
2,886,974	+		Sama_2403	0.21	+1.8
2,886,974	+		Sama_2403	0.21	-0.8
2,886,974	+		Sama_2403	0.21	+0.8
2,886,975	-		Sama_2403	0.21	+0.8
2,886,975	-		Sama_2403	0.21	-0.1
2,886,975	-		Sama_2403	0.21	-1.2
2,886,975	-		Sama_2403	0.21	-0.1
2,886,975	-		Sama_2403	0.21	+0.7
2,886,975	-		Sama_2403	0.21	+1.1
2,886,975	-		Sama_2403	0.21	+1.7
2,887,054	+		Sama_2403	0.29	-1.8
2,887,055	-		Sama_2403	0.29	-1.6
2,887,145	+		Sama_2403	0.38	-0.4
2,887,145	+		Sama_2403	0.38	-0.1
2,887,145	+		Sama_2403	0.38	+0.8
2,887,145	+		Sama_2403	0.38	+0.1
2,887,145	+		Sama_2403	0.38	-0.1
2,887,145	+		Sama_2403	0.38	+0.5
2,887,145	+		Sama_2403	0.38	-0.5
2,887,145	+		Sama_2403	0.38	-0.6
2,887,145	+		Sama_2403	0.38	-2.3
2,887,145	+		Sama_2403	0.38	-0.6
2,887,146	-		Sama_2403	0.38	-2.2
2,887,146	-		Sama_2403	0.38	+0.4
2,887,146	-		Sama_2403	0.38	-2.2
2,887,146	-		Sama_2403	0.38	+2.4
2,887,205	+		Sama_2403	0.43	-0.3
2,887,205	+		Sama_2403	0.43	+0.8
2,887,262	-		Sama_2403	0.49	-1.2
2,887,262	-		Sama_2403	0.49	+1.3
2,887,262	-		Sama_2403	0.49	-0.8
2,887,262	-		Sama_2403	0.49	+0.1
2,887,265	+		Sama_2403	0.49	+0.8
2,887,265	+		Sama_2403	0.49	+0.7
2,887,265	+		Sama_2403	0.49	-0.9
2,887,265	+		Sama_2403	0.49	-2.5
2,887,265	+		Sama_2403	0.49	+0.5
2,887,265	+		Sama_2403	0.49	-0.1
2,887,265	+		Sama_2403	0.49	+0.0
2,887,265	+		Sama_2403	0.49	+0.3
2,887,265	+		Sama_2403	0.49	-1.3
2,887,265	+		Sama_2403	0.49	-1.2
2,887,265	+		Sama_2403	0.49	-0.8
2,887,265	+		Sama_2403	0.49	-0.5
2,887,266	-		Sama_2403	0.49	-0.0
2,887,266	-		Sama_2403	0.49	-0.6
2,887,266	-		Sama_2403	0.49	-0.8
2,887,266	-		Sama_2403	0.49	-1.5
2,887,266	-		Sama_2403	0.49	-0.6
2,887,266	-		Sama_2403	0.49	-0.2
2,887,266	-		Sama_2403	0.49	+0.9
2,887,266	-		Sama_2403	0.49	+0.3
2,887,266	-		Sama_2403	0.49	+0.7
2,887,266	-		Sama_2403	0.49	+0.0
2,887,266	-		Sama_2403	0.49	+1.0
2,887,266	-		Sama_2403	0.49	+0.8
2,887,304	+		Sama_2403	0.53	+0.6
2,887,304	+		Sama_2403	0.53	-3.3
2,887,304	+		Sama_2403	0.53	+0.8
2,887,304	+		Sama_2403	0.53	-0.5
2,887,305	-		Sama_2403	0.53	-0.9
2,887,322	+		Sama_2403	0.54	+0.5
2,887,322	+		Sama_2403	0.54	+0.7
2,887,323	-		Sama_2403	0.54	-0.8
2,887,323	-		Sama_2403	0.54	-0.9
2,887,323	-		Sama_2403	0.54	-0.5
2,887,323	-		Sama_2403	0.54	-1.8
2,887,323	-		Sama_2403	0.54	-1.1
2,887,330	+		Sama_2403	0.55	-1.4
2,887,371	-		Sama_2403	0.59	+0.8
2,887,502	+		Sama_2403	0.71	+0.6
2,887,531	+		Sama_2403	0.74	-0.2
2,887,547	+		Sama_2403	0.76	+0.4
2,887,547	+		Sama_2403	0.76	+0.2
2,887,547	+		Sama_2403	0.76	+0.9
2,887,547	+		Sama_2403	0.76	-3.0
2,887,547	+		Sama_2403	0.76	+2.1
2,887,548	-		Sama_2403	0.76	+0.0
2,887,548	-		Sama_2403	0.76	-0.2
2,887,558	+		Sama_2403	0.77	-0.8
2,887,559	-		Sama_2403	0.77	+0.8
2,887,626	-		Sama_2403	0.83	-0.2
2,887,692	-		Sama_2403	0.89	-0.2
2,887,716	+				-0.7
2,887,717	-				+2.0
2,887,717	-				+0.3
2,887,751	+				+1.0
2,887,751	+				-0.3
2,887,751	+				-2.2
2,887,751	+				+0.8
2,887,751	+				+0.8
2,887,752	-				+0.5
2,887,752	-				-0.5
2,887,782	+				+0.5
2,887,782	+				+0.6
2,887,782	+				-0.6
2,887,782	+				-1.5
2,887,783	-				+0.9
2,887,789	+				+0.5
2,887,789	+				+0.5
2,887,789	+				-0.8
2,887,789	+				-0.5
2,887,789	+				-1.0
2,887,789	+				-1.9
2,887,789	+				-0.4
2,887,789	+				+1.2
2,887,789	+				-2.8
2,887,790	-				-0.0
2,887,790	-				+0.5
2,887,790	-				+0.5
2,887,790	-				-0.2
2,887,790	-				+0.4
2,887,790	-				-0.4
2,887,790	-				-0.1
2,887,790	-				-0.8
2,887,793	+				+1.2
2,887,793	+				+0.2
2,887,793	+				-1.8
2,887,794	-				-0.8
2,887,803	-				+2.2
2,887,816	+				-0.2
2,887,844	-				+0.3
2,887,877	+				+0.1
2,887,898	+				-0.5
2,887,899	-				+1.1
2,887,959	+				+1.6
2,887,960	-				-0.5
2,887,960	-				-1.7
2,888,046	-		Sama_2404	0.11	-0.5
2,888,046	-		Sama_2404	0.11	-0.8
2,888,143	+		Sama_2404	0.19	-0.7
2,888,143	+		Sama_2404	0.19	+0.6
2,888,143	+		Sama_2404	0.19	-0.7
2,888,144	-		Sama_2404	0.19	+1.2
2,888,144	-		Sama_2404	0.19	-0.1
2,888,144	-		Sama_2404	0.19	+0.8
2,888,144	-		Sama_2404	0.19	-1.8
2,888,144	-		Sama_2404	0.19	+0.8
2,888,147	+		Sama_2404	0.19	+0.2
2,888,147	+		Sama_2404	0.19	-0.8
2,888,147	+		Sama_2404	0.19	-2.3
2,888,147	+		Sama_2404	0.19	-1.1
2,888,147	+		Sama_2404	0.19	-3.3
2,888,147	+		Sama_2404	0.19	-0.5
2,888,147	+		Sama_2404	0.19	+0.5
2,888,147	+		Sama_2404	0.19	+0.4
2,888,147	+		Sama_2404	0.19	-1.8
2,888,148	-		Sama_2404	0.20	-0.8
2,888,148	-		Sama_2404	0.20	+0.8
2,888,148	-		Sama_2404	0.20	+0.2
2,888,148	-		Sama_2404	0.20	-0.9
2,888,200	+		Sama_2404	0.24	+0.2
2,888,200	+		Sama_2404	0.24	-0.9
2,888,200	+		Sama_2404	0.24	+0.1
2,888,200	+		Sama_2404	0.24	+0.4
2,888,200	+		Sama_2404	0.24	-0.9
2,888,201	-		Sama_2404	0.24	+0.1
2,888,201	-		Sama_2404	0.24	+0.1
2,888,201	-		Sama_2404	0.24	-3.2
2,888,202	+		Sama_2404	0.24	-0.6
2,888,202	+		Sama_2404	0.24	+0.8
2,888,202	+		Sama_2404	0.24	-1.7
2,888,203	-		Sama_2404	0.24	-1.6
2,888,349	+		Sama_2404	0.36	-1.1
2,888,350	-		Sama_2404	0.36	-0.7
2,888,373	+		Sama_2404	0.38	-0.7
2,888,427	+		Sama_2404	0.42	-1.4
2,888,652	+		Sama_2404	0.61	-0.5
2,888,652	+		Sama_2404	0.61	+1.2
2,888,652	+		Sama_2404	0.61	-1.0