Strain Fitness in Shewanella amazonensis SB2B around Sama_1738

Experiment: Minimal media, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsA and ihfB are separated by 76 nucleotidesihfB and Sama_1738 are separated by 82 nucleotidesSama_1738 and Sama_1739 are separated by 1 nucleotides Sama_1736: rpsA - 30S ribosomal protein S1 (RefSeq), at 2,126,185 to 2,127,852 rpsA Sama_1737: ihfB - integration host factor subunit beta (RefSeq), at 2,127,929 to 2,128,216 ihfB Sama_1738: Sama_1738 - membrane protein (RefSeq), at 2,128,299 to 2,128,640 _1738 Sama_1739: Sama_1739 - tetratricopeptide repeat protein (RefSeq), at 2,128,642 to 2,129,802 _1739 Position (kb) 2128 2129Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2127.912 kb on + strandat 2127.915 kb on + strandat 2127.921 kb on + strandat 2127.921 kb on + strandat 2127.925 kb on + strandat 2127.993 kb on + strand, within ihfBat 2128.033 kb on + strand, within ihfBat 2128.091 kb on + strand, within ihfBat 2128.154 kb on + strand, within ihfBat 2128.521 kb on + strand, within Sama_1738

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media, pH7
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2,127,912 + -0.3
2,127,915 + -5.2
2,127,921 + -4.0
2,127,921 + -1.5
2,127,925 + -1.1
2,127,993 + ihfB Sama_1737 0.22 -1.5
2,128,033 + ihfB Sama_1737 0.36 -3.6
2,128,091 + ihfB Sama_1737 0.56 -2.9
2,128,154 + ihfB Sama_1737 0.78 -2.9
2,128,521 + Sama_1738 0.65 -0.5

Or see this region's nucleotide sequence