Strain Fitness in Shewanella amazonensis SB2B around Sama_1210

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
1,485,820	+		Sama_1209	0.71	-1.8
1,485,820	+		Sama_1209	0.71	-0.2
1,485,821	-		Sama_1209	0.71	-0.1
1,485,878	+		Sama_1209	0.74	-0.3
1,485,924	-		Sama_1209	0.76	+0.8
1,485,926	+		Sama_1209	0.76	-0.3
1,485,939	-		Sama_1209	0.77	+0.3
1,485,941	-		Sama_1209	0.77	+0.4
1,485,946	+		Sama_1209	0.77	-2.4
1,485,946	+		Sama_1209	0.77	-0.1
1,485,946	+		Sama_1209	0.77	-1.5
1,485,946	+		Sama_1209	0.77	+0.8
1,485,946	+		Sama_1209	0.77	-1.5
1,485,946	+		Sama_1209	0.77	+1.7
1,485,947	-		Sama_1209	0.77	-1.0
1,485,986	+		Sama_1209	0.79	+0.2
1,485,986	+		Sama_1209	0.79	+0.3
1,485,987	-		Sama_1209	0.79	+1.8
1,485,999	+		Sama_1209	0.79	+0.1
1,486,000	-		Sama_1209	0.79	-1.5
1,486,000	-		Sama_1209	0.79	+0.0
1,486,000	-		Sama_1209	0.79	+0.3
1,486,087	+		Sama_1209	0.83	-0.2
1,486,087	+		Sama_1209	0.83	+1.2
1,486,088	-		Sama_1209	0.84	+2.4
1,486,088	-		Sama_1209	0.84	+0.5
1,486,103	-		Sama_1209	0.84	-0.8
1,486,254	+				-1.2
1,486,254	+				-0.8
1,486,254	+				+0.3
1,486,392	+				+0.1
1,486,448	+				-0.2
1,486,448	+				+1.5
1,486,449	-				+0.8
1,486,451	+				-1.2
1,486,451	+				+0.6
1,486,451	+				+0.1
1,486,451	+				-0.1
1,486,452	-				+0.7
1,486,452	-				-2.8
1,486,467	+				+0.4
1,486,467	+				+0.2
1,486,467	+				+1.9
1,486,468	-				-1.0
1,486,483	+				+0.8
1,486,484	-				-1.8
1,486,484	-				+0.6
1,486,495	-				-0.8
1,486,514	-				-1.8
1,486,517	+				+0.3
1,486,517	+				+0.6
1,486,536	+				-2.4
1,486,537	-				-1.3
1,486,537	-				+0.6
1,486,537	-				+0.8
1,486,574	+				+0.6
1,486,575	-				+1.2
1,486,597	-				+0.3
1,486,615	+				-0.5
1,486,616	-				-0.3
1,486,629	+				+0.7
1,486,630	-				-0.0
1,486,653	+				-0.8
1,486,653	+				-0.4
1,486,653	+				-1.3
1,486,654	-				-1.1
1,486,679	-				+0.0
1,486,692	+				+0.3
1,486,743	-				+0.8
1,486,749	+				+1.9
1,486,749	+				+0.1
1,486,749	+				+0.1
1,486,750	-				+0.9
1,486,750	-				+0.6
1,486,750	-				-0.6
1,486,750	-				+0.1
1,486,812	-				-0.2
1,486,820	+				-1.4
1,486,820	+				+0.7
1,486,820	+				+0.8
1,486,820	+				-0.9
1,486,921	+				-2.1
1,486,921	+				-0.9
1,486,921	+				+1.4
1,486,921	+				-1.8
1,486,921	+				-1.1
1,486,921	+				-2.5
1,486,921	+				-0.1
1,486,921	+				-1.3
1,486,922	-				+0.3
1,486,922	-				-1.2
1,486,922	-				-2.2
1,486,922	-				-1.6
1,486,922	-				-0.2
1,487,116	+		Sama_1210	0.16	-0.6
1,487,116	+		Sama_1210	0.16	+0.3
1,487,125	+		Sama_1210	0.16	-0.2
1,487,125	+		Sama_1210	0.16	+1.4
1,487,172	-		Sama_1210	0.18	+0.4
1,487,192	+		Sama_1210	0.19	+1.7
1,487,192	+		Sama_1210	0.19	+0.5
1,487,192	+		Sama_1210	0.19	-0.2
1,487,192	+		Sama_1210	0.19	+0.5
1,487,193	-		Sama_1210	0.19	+0.5
1,487,193	-		Sama_1210	0.19	+0.0
1,487,251	+		Sama_1210	0.22	-0.0
1,487,251	+		Sama_1210	0.22	+0.8
1,487,251	+		Sama_1210	0.22	+0.5
1,487,252	-		Sama_1210	0.22	-1.5
1,487,252	-		Sama_1210	0.22	+1.1
1,487,339	+		Sama_1210	0.26	-0.7
1,487,346	-		Sama_1210	0.26	+1.0
1,487,346	-		Sama_1210	0.26	+1.5
1,487,346	-		Sama_1210	0.26	-1.5
1,487,346	-		Sama_1210	0.26	+0.0
1,487,379	-		Sama_1210	0.28	-0.3
1,487,424	+		Sama_1210	0.30	+0.2
1,487,424	+		Sama_1210	0.30	+0.6
1,487,424	+		Sama_1210	0.30	-0.7
1,487,424	+		Sama_1210	0.30	-0.2
1,487,424	+		Sama_1210	0.30	+0.8
1,487,424	+		Sama_1210	0.30	-1.1
1,487,424	+		Sama_1210	0.30	+1.6
1,487,424	+		Sama_1210	0.30	+0.6
1,487,424	+		Sama_1210	0.30	+0.1
1,487,425	-		Sama_1210	0.30	-2.0
1,487,425	-		Sama_1210	0.30	-1.1
1,487,425	-		Sama_1210	0.30	-0.4
1,487,425	-		Sama_1210	0.30	-0.5
1,487,425	-		Sama_1210	0.30	-0.4
1,487,425	-		Sama_1210	0.30	+0.4
1,487,425	-		Sama_1210	0.30	+0.2
1,487,425	-		Sama_1210	0.30	+0.2
1,487,426	+		Sama_1210	0.30	-0.5
1,487,427	-		Sama_1210	0.30	-0.5
1,487,557	+		Sama_1210	0.36	-0.2
1,487,558	-		Sama_1210	0.36	-1.5
1,487,558	-		Sama_1210	0.36	-1.6
1,487,558	-		Sama_1210	0.36	-1.2
1,487,558	-		Sama_1210	0.36	+0.4
1,487,558	-		Sama_1210	0.36	-1.4
1,487,558	-		Sama_1210	0.36	+0.8
1,487,594	-		Sama_1210	0.37	-0.3
1,487,594	-		Sama_1210	0.37	-0.9
1,487,594	-		Sama_1210	0.37	-0.0
1,487,608	+		Sama_1210	0.38	-0.4
1,487,609	-		Sama_1210	0.38	-1.7
1,487,624	+		Sama_1210	0.39	-0.7
1,487,624	+		Sama_1210	0.39	+1.8
1,487,624	+		Sama_1210	0.39	+1.2
1,487,625	-		Sama_1210	0.39	+0.3
1,487,625	-		Sama_1210	0.39	+2.0
1,487,625	-		Sama_1210	0.39	+0.8
1,487,628	+		Sama_1210	0.39	-3.9
1,487,628	+		Sama_1210	0.39	+0.2
1,487,628	+		Sama_1210	0.39	+0.9
1,487,628	+		Sama_1210	0.39	-1.5
1,487,628	+		Sama_1210	0.39	+0.5
1,487,628	+		Sama_1210	0.39	+1.0
1,487,629	-		Sama_1210	0.39	+0.8
1,487,629	-		Sama_1210	0.39	-0.6
1,487,629	-		Sama_1210	0.39	+1.1
1,487,667	-		Sama_1210	0.41	+0.6
1,487,714	+		Sama_1210	0.43	-0.6
1,487,714	+		Sama_1210	0.43	-0.3
1,487,714	+		Sama_1210	0.43	+0.8
1,487,715	-		Sama_1210	0.43	+0.1
1,487,751	+		Sama_1210	0.45	-0.5
1,487,782	+		Sama_1210	0.46	+1.1
1,487,783	-		Sama_1210	0.46	-1.3
1,487,793	+		Sama_1210	0.47	-0.7
1,487,793	+		Sama_1210	0.47	+1.0
1,487,793	+		Sama_1210	0.47	+0.5
1,487,793	+		Sama_1210	0.47	-0.2
1,487,793	+		Sama_1210	0.47	+0.4
1,487,793	+		Sama_1210	0.47	-2.0
1,487,793	+		Sama_1210	0.47	+0.2
1,487,793	+		Sama_1210	0.47	+1.2
1,487,793	+		Sama_1210	0.47	-0.2
1,487,793	+		Sama_1210	0.47	-0.2
1,487,794	-		Sama_1210	0.47	-1.2
1,487,794	-		Sama_1210	0.47	+0.5
1,487,794	-		Sama_1210	0.47	+0.7
1,487,794	-		Sama_1210	0.47	-0.8
1,487,794	-		Sama_1210	0.47	+0.0
1,487,794	-		Sama_1210	0.47	-0.3
1,487,794	-		Sama_1210	0.47	+1.0
1,487,794	-		Sama_1210	0.47	-0.0
1,487,833	+		Sama_1210	0.48	+0.3
1,487,833	+		Sama_1210	0.48	+1.0
1,487,833	+		Sama_1210	0.48	+0.4
1,487,834	-		Sama_1210	0.48	+0.1
1,487,834	-		Sama_1210	0.48	-0.5
1,487,834	-		Sama_1210	0.48	+1.1
1,487,834	-		Sama_1210	0.48	-1.5
1,487,834	-		Sama_1210	0.48	+0.4
1,487,847	-		Sama_1210	0.49	-0.3
1,487,861	+		Sama_1210	0.50	+1.3
1,487,861	+		Sama_1210	0.50	+0.4
1,487,861	+		Sama_1210	0.50	-0.5
1,487,861	+		Sama_1210	0.50	-0.5
1,487,861	+		Sama_1210	0.50	-0.0
1,487,862	-		Sama_1210	0.50	+0.7
1,487,862	-		Sama_1210	0.50	-0.9
1,487,862	-		Sama_1210	0.50	-0.9
1,488,031	+		Sama_1210	0.57	+0.2
1,488,032	-		Sama_1210	0.58	+4.0
1,488,032	-		Sama_1210	0.58	-1.0
1,488,068	-		Sama_1210	0.59	+0.2
1,488,078	+		Sama_1210	0.60	-0.5
1,488,078	+		Sama_1210	0.60	-2.3
1,488,078	+		Sama_1210	0.60	-1.2
1,488,078	+		Sama_1210	0.60	-3.4
1,488,079	-		Sama_1210	0.60	+1.6
1,488,104	+		Sama_1210	0.61	+1.4
1,488,104	+		Sama_1210	0.61	+0.8
1,488,104	+		Sama_1210	0.61	+0.8
1,488,105	-		Sama_1210	0.61	+0.8
1,488,105	-		Sama_1210	0.61	+0.3
1,488,137	+		Sama_1210	0.62	-3.5
1,488,138	-		Sama_1210	0.62	-0.5
1,488,138	-		Sama_1210	0.62	-0.2
1,488,142	+		Sama_1210	0.63	+0.6
1,488,143	-		Sama_1210	0.63	-2.3
1,488,143	-		Sama_1210	0.63	-0.2
1,488,143	-		Sama_1210	0.63	+0.1
1,488,192	-		Sama_1210	0.65	-0.0
1,488,192	-		Sama_1210	0.65	-0.0
1,488,237	+		Sama_1210	0.67	-0.1
1,488,266	+		Sama_1210	0.68	+0.4
1,488,266	+		Sama_1210	0.68	+1.6
1,488,267	-		Sama_1210	0.68	+0.1
1,488,267	-		Sama_1210	0.68	-2.9
1,488,267	-		Sama_1210	0.68	-0.6
1,488,267	-		Sama_1210	0.68	+0.7
1,488,268	+		Sama_1210	0.68	-0.6
1,488,268	+		Sama_1210	0.68	-0.8
1,488,268	+		Sama_1210	0.68	+0.4
1,488,268	+		Sama_1210	0.68	-2.3
1,488,268	+		Sama_1210	0.68	+0.5
1,488,268	+		Sama_1210	0.68	-0.3
1,488,269	-		Sama_1210	0.68	+0.6
1,488,269	-		Sama_1210	0.68	-0.6
1,488,409	+		Sama_1210	0.75	-0.5
1,488,409	+		Sama_1210	0.75	-0.5
1,488,410	-		Sama_1210	0.75	-1.9
1,488,410	-		Sama_1210	0.75	-0.4
1,488,410	-		Sama_1210	0.75	-0.0
1,488,410	-		Sama_1210	0.75	-2.9
1,488,410	-		Sama_1210	0.75	-1.6
1,488,410	-		Sama_1210	0.75	-0.6
1,488,410	-		Sama_1210	0.75	-0.2
1,488,461	-		Sama_1210	0.77	-0.3
1,488,466	+		Sama_1210	0.77	-1.5
1,488,466	+		Sama_1210	0.77	+1.2
1,488,466	+		Sama_1210	0.77	+0.0
1,488,466	+		Sama_1210	0.77	-0.7
1,488,466	+		Sama_1210	0.77	-0.2
1,488,467	-		Sama_1210	0.77	+0.3
1,488,467	-		Sama_1210	0.77	-2.0
1,488,467	-		Sama_1210	0.77	+0.1
1,488,467	-		Sama_1210	0.77	+1.0
1,488,497	+		Sama_1210	0.79	+0.8
1,488,497	+		Sama_1210	0.79	+0.6
1,488,498	-		Sama_1210	0.79	-2.6
1,488,498	-		Sama_1210	0.79	-0.3
1,488,533	-		Sama_1210	0.80	+2.0
1,488,549	-		Sama_1210	0.81	+0.8
1,488,599	+		Sama_1210	0.83	-1.0
1,488,599	+		Sama_1210	0.83	-0.3
1,488,599	+		Sama_1210	0.83	-1.8
1,488,599	+		Sama_1210	0.83	+1.1
1,488,600	-		Sama_1210	0.84	+1.7
1,488,600	-		Sama_1210	0.84	+0.1
1,488,601	+		Sama_1210	0.84	+0.0
1,488,601	+		Sama_1210	0.84	+0.9
1,488,601	+		Sama_1210	0.84	-1.2
1,488,602	-		Sama_1210	0.84	+0.6
1,488,602	-		Sama_1210	0.84	+1.0
1,488,602	-		Sama_1210	0.84	-2.2
1,488,602	-		Sama_1210	0.84	-1.7
1,488,602	-		Sama_1210	0.84	-1.3
1,488,654	+		Sama_1210	0.86	-1.2
1,488,655	-		Sama_1210	0.86	+0.9
1,488,655	-		Sama_1210	0.86	+1.5
1,488,655	-		Sama_1210	0.86	+0.2
1,488,675	+		Sama_1210	0.87	+0.8
1,488,751	-				-0.9
1,488,751	-				+0.8
1,488,752	+				-1.2
1,488,753	-				+0.5
1,488,753	-				-0.3
1,488,818	+				-1.8
1,488,827	+				+0.3
1,488,828	-				+0.7
1,488,828	-				+0.7
1,488,860	+				+1.2
1,488,891	+				-0.6
1,488,891	+				-0.6
1,488,891	+				+1.1
1,488,892	-				+1.0
1,488,892	-				-1.2
1,488,892	-				+0.8
1,488,937	+				+0.3
1,488,937	+				+1.8
1,488,937	+				+0.5
1,488,937	+				-0.5
1,488,938	-				+0.1
1,488,938	-				-0.2
1,488,938	-				+0.1
1,488,938	-				-0.3
1,488,938	-				+0.3
1,488,938	-				+0.3
1,488,938	-				-3.4
1,488,938	-				-0.9
1,488,938	-				+0.2
1,488,938	-				+0.1
1,488,965	+				+1.1
1,488,965	+				-0.4
1,488,966	-				+1.1
1,488,966	-				+0.8
1,488,966	-				+0.5
1,488,982	+				-0.8
1,489,018	-				-1.8
1,489,018	-				-0.5
1,489,022	-				+0.5
1,489,048	+				-1.0
1,489,048	+				-0.9
1,489,048	+				-0.6
1,489,049	-				+0.3
1,489,074	+				-0.4
1,489,074	+				+0.8
1,489,075	-				-2.1
1,489,219	+				-0.0
1,489,219	+				+1.8
1,489,220	-				+0.1
1,489,220	-				-0.9
1,489,220	-				+0.2
1,489,239	+				+0.8
1,489,239	+				-0.6
1,489,294	+		Sama_1211	0.12	-1.4
1,489,295	-		Sama_1211	0.13	-0.5
1,489,295	-		Sama_1211	0.13	-0.2
1,489,303	+		Sama_1211	0.13	-1.3
1,489,303	+		Sama_1211	0.13	+0.7
1,489,304	-		Sama_1211	0.13	+0.1
1,489,432	-		Sama_1211	0.20	-0.6
1,489,467	+		Sama_1211	0.22	-0.3
1,489,467	+		Sama_1211	0.22	+0.8
1,489,468	-		Sama_1211	0.22	-1.0
1,489,468	-		Sama_1211	0.22	+0.4
1,489,528	-		Sama_1211	0.25	-0.2
1,489,528	-		Sama_1211	0.25	+2.6
1,489,551	+		Sama_1211	0.26	-0.3
1,489,552	-		Sama_1211	0.26	+0.0
1,489,636	-		Sama_1211	0.30	+0.1
1,489,648	+		Sama_1211	0.31	+0.3
1,489,648	+		Sama_1211	0.31	-0.1
1,489,648	+		Sama_1211	0.31	+1.1
1,489,648	+		Sama_1211	0.31	+0.4
1,489,648	+		Sama_1211	0.31	+0.3
1,489,648	+		Sama_1211	0.31	-0.4
1,489,649	-		Sama_1211	0.31	-1.5
1,489,649	-		Sama_1211	0.31	-0.8
1,489,649	-		Sama_1211	0.31	-0.5
1,489,649	-		Sama_1211	0.31	-1.5
1,489,649	-		Sama_1211	0.31	-0.6
1,489,649	-		Sama_1211	0.31	-0.2
1,489,649	-		Sama_1211	0.31	-0.7
1,489,771	+		Sama_1211	0.37	-0.9
1,489,813	+		Sama_1211	0.40	-1.9
1,489,814	-		Sama_1211	0.40	-1.6
1,489,838	+		Sama_1211	0.41	-0.5
1,489,838	+		Sama_1211	0.41	-0.2
1,489,838	+		Sama_1211	0.41	-0.0
1,489,838	+		Sama_1211	0.41	+0.8
1,489,839	-		Sama_1211	0.41	-1.3
1,489,959	+		Sama_1211	0.47	+1.0