Strain Fitness in Shewanella amazonensis SB2B around Sama_1172

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
1,429,770	+		Sama_1171	0.46	-1.0
1,429,771	-		Sama_1171	0.47	-0.7
1,429,827	-		Sama_1171	0.50	+2.5
1,429,870	+		Sama_1171	0.53	+0.0
1,429,889	+		Sama_1171	0.54	+1.5
1,429,889	+		Sama_1171	0.54	-0.7
1,430,057	-		Sama_1171	0.65	-0.1
1,430,103	+		Sama_1171	0.68	+0.5
1,430,103	+		Sama_1171	0.68	-1.1
1,430,104	-		Sama_1171	0.68	-1.0
1,430,189	+		Sama_1171	0.73	-1.2
1,430,190	-		Sama_1171	0.73	+0.0
1,430,190	-		Sama_1171	0.73	+0.2
1,430,190	-		Sama_1171	0.73	+0.3
1,430,190	-		Sama_1171	0.73	-0.3
1,430,255	+		Sama_1171	0.77	+0.1
1,430,255	+		Sama_1171	0.77	+1.1
1,430,255	+		Sama_1171	0.77	+0.9
1,430,256	-		Sama_1171	0.78	-2.3
1,430,258	+		Sama_1171	0.78	+0.5
1,430,258	+		Sama_1171	0.78	+0.4
1,430,258	+		Sama_1171	0.78	-0.3
1,430,258	+		Sama_1171	0.78	-0.1
1,430,258	+		Sama_1171	0.78	-0.7
1,430,258	+		Sama_1171	0.78	+1.7
1,430,258	+		Sama_1171	0.78	+1.1
1,430,259	-		Sama_1171	0.78	-0.9
1,430,259	-		Sama_1171	0.78	-0.8
1,430,259	-		Sama_1171	0.78	+0.3
1,430,259	-		Sama_1171	0.78	-0.9
1,430,259	-		Sama_1171	0.78	+0.5
1,430,259	-		Sama_1171	0.78	-1.5
1,430,279	+		Sama_1171	0.79	-0.2
1,430,279	+		Sama_1171	0.79	+2.3
1,430,280	-		Sama_1171	0.79	+1.9
1,430,280	-		Sama_1171	0.79	+0.7
1,430,366	-		Sama_1171	0.85	-1.1
1,430,396	+		Sama_1171	0.87	+0.7
1,430,463	+				-0.7
1,430,500	-				-0.1
1,430,516	+				-0.6
1,430,527	+				-0.2
1,430,528	-				-3.6
1,430,664	-				-0.5
1,430,664	-				-0.7
1,430,690	+				+0.2
1,430,727	+				-0.2
1,430,748	+				-0.2
1,430,749	-				+0.3
1,430,749	-				+0.8
1,430,749	-				+0.3
1,430,749	-				+0.3
1,430,753	+				+1.1
1,430,753	+				-0.4
1,430,753	+				+0.7
1,430,754	-				-1.5
1,430,764	-				+0.3
1,430,764	-				+0.2
1,430,805	-				-1.0
1,430,811	+				-0.7
1,430,849	+				+0.7
1,430,849	+				+0.3
1,430,849	+				-0.7
1,430,849	+				+0.1
1,430,849	+				-0.5
1,430,850	-				+1.9
1,430,850	-				+0.4
1,430,850	-				-0.7
1,430,850	-				+0.9
1,430,850	-				+0.0
1,430,850	-				+1.0
1,430,850	-				-0.5
1,430,850	-				-0.3
1,430,855	+				+0.4
1,430,855	+				+2.2
1,430,855	+				+0.6
1,430,856	-				+0.4
1,430,856	-				+0.3
1,430,888	+				+2.1
1,430,888	+				-2.9
1,430,889	-				+0.7
1,430,889	-				+1.1
1,430,889	-				-0.7
1,430,889	-				-0.0
1,430,889	-				+0.0
1,430,889	-				-0.5
1,430,894	+				-0.9
1,430,894	+				-0.7
1,430,895	-				-0.4
1,430,895	-				-0.1
1,430,895	-				-0.3
1,430,897	+				+0.9
1,430,897	+				+0.9
1,430,897	+				+0.2
1,430,897	+				+0.1
1,430,898	-				-1.5
1,430,898	-				+0.2
1,430,936	+		Sama_1172	0.11	-0.1
1,430,936	+		Sama_1172	0.11	-0.6
1,430,937	-		Sama_1172	0.11	-0.1
1,430,974	+		Sama_1172	0.13	+0.6
1,430,974	+		Sama_1172	0.13	-2.1
1,430,974	+		Sama_1172	0.13	+0.2
1,430,975	-		Sama_1172	0.13	-1.1
1,431,080	+		Sama_1172	0.18	+0.3
1,431,080	+		Sama_1172	0.18	-0.7
1,431,080	+		Sama_1172	0.18	-0.9
1,431,081	-		Sama_1172	0.18	+0.4
1,431,081	-		Sama_1172	0.18	-0.7
1,431,081	-		Sama_1172	0.18	+0.9
1,431,081	-		Sama_1172	0.18	+0.9
1,431,081	-		Sama_1172	0.18	+0.3
1,431,081	-		Sama_1172	0.18	+0.1
1,431,105	+		Sama_1172	0.19	-0.3
1,431,179	+		Sama_1172	0.23	+3.1
1,431,179	+		Sama_1172	0.23	+1.3
1,431,179	+		Sama_1172	0.23	-0.9
1,431,180	-		Sama_1172	0.23	-1.9
1,431,180	-		Sama_1172	0.23	-0.4
1,431,180	-		Sama_1172	0.23	-0.4
1,431,180	-		Sama_1172	0.23	-1.9
1,431,278	+		Sama_1172	0.27	-0.4
1,431,278	+		Sama_1172	0.27	-1.0
1,431,279	-		Sama_1172	0.27	-0.9
1,431,347	+		Sama_1172	0.31	+0.6
1,431,348	-		Sama_1172	0.31	+1.0
1,431,348	-		Sama_1172	0.31	+0.9
1,431,497	+		Sama_1172	0.37	-0.7
1,431,497	+		Sama_1172	0.37	+0.1
1,431,497	+		Sama_1172	0.37	-0.4
1,431,498	-		Sama_1172	0.38	-1.7
1,431,547	+		Sama_1172	0.40	+1.0
1,431,547	+		Sama_1172	0.40	+1.1
1,431,560	+		Sama_1172	0.40	+0.5
1,431,561	-		Sama_1172	0.40	-0.9
1,431,561	-		Sama_1172	0.40	-1.5
1,431,563	-		Sama_1172	0.41	+0.5
1,431,599	+		Sama_1172	0.42	-2.7
1,431,617	+		Sama_1172	0.43	+0.2
1,431,617	+		Sama_1172	0.43	+2.2
1,431,618	-		Sama_1172	0.43	+0.2
1,431,618	-		Sama_1172	0.43	-0.6
1,431,618	-		Sama_1172	0.43	+0.7
1,431,618	-		Sama_1172	0.43	-0.9
1,431,618	-		Sama_1172	0.43	-1.5
1,431,656	+		Sama_1172	0.45	-1.5
1,431,657	-		Sama_1172	0.45	-0.4
1,431,687	-		Sama_1172	0.46	-0.2
1,431,713	+		Sama_1172	0.47	-0.7
1,431,714	-		Sama_1172	0.48	-1.1
1,431,714	-		Sama_1172	0.48	-0.1
1,431,840	-		Sama_1172	0.53	+0.5
1,431,882	-		Sama_1172	0.55	+0.3
1,431,882	-		Sama_1172	0.55	+0.0
1,432,011	+		Sama_1172	0.61	+0.2
1,432,122	+		Sama_1172	0.66	+0.5
1,432,122	+		Sama_1172	0.66	-2.3
1,432,129	-		Sama_1172	0.67	+0.9
1,432,168	+		Sama_1172	0.69	+1.1
1,432,169	-		Sama_1172	0.69	+0.8
1,432,313	+		Sama_1172	0.75	+1.9
1,432,313	+		Sama_1172	0.75	+0.4
1,432,313	+		Sama_1172	0.75	+1.1
1,432,314	-		Sama_1172	0.75	+0.7
1,432,314	-		Sama_1172	0.75	+0.3
1,432,314	-		Sama_1172	0.75	-1.6
1,432,314	-		Sama_1172	0.75	+1.1
1,432,371	-		Sama_1172	0.78	-1.6
1,432,371	-		Sama_1172	0.78	+1.6
1,432,371	-		Sama_1172	0.78	+0.9
1,432,499	+		Sama_1172	0.84	+1.4
1,432,499	+		Sama_1172	0.84	+1.3
1,432,500	-		Sama_1172	0.84	+0.5
1,432,500	-		Sama_1172	0.84	-1.7
1,432,500	-		Sama_1172	0.84	+1.0
1,432,500	-		Sama_1172	0.84	+0.3
1,432,500	-		Sama_1172	0.84	-1.1
1,432,685	+				+0.1
1,432,686	-				-0.4
1,432,686	-				+0.4
1,432,686	-				-0.0
1,432,747	+				-1.1
1,432,839	+				-1.1
1,432,839	+				-2.6
1,432,839	+				-0.1
1,432,839	+				+0.2
1,432,839	+				+0.4
1,432,839	+				+0.0
1,432,839	+				-2.0
1,432,840	-				-1.6
1,432,840	-				+0.3
1,432,840	-				-0.4
1,432,840	-				+0.6
1,432,840	-				-0.6
1,432,840	-				+0.9
1,432,840	-				+0.3
1,432,894	-				+1.2
1,432,912	+				-0.7
1,432,912	+				-1.0
1,432,916	+				-2.6
1,432,916	+				+0.9
1,432,916	+				+0.3
1,433,012	-				-1.7
1,433,012	-				-1.8
1,433,057	+		Sama_1173	0.10	-0.3
1,433,057	+		Sama_1173	0.10	-0.1
1,433,058	-		Sama_1173	0.10	-1.3
1,433,058	-		Sama_1173	0.10	-1.1
1,433,068	+		Sama_1173	0.12	+0.3
1,433,071	-		Sama_1173	0.12	-0.5
1,433,071	-		Sama_1173	0.12	+0.1
1,433,071	-		Sama_1173	0.12	-0.1
1,433,095	-		Sama_1173	0.17	-0.1
1,433,128	+		Sama_1173	0.22	-1.7
1,433,128	+		Sama_1173	0.22	-0.1
1,433,128	+		Sama_1173	0.22	+0.0
1,433,129	-		Sama_1173	0.22	+0.9
1,433,129	-		Sama_1173	0.22	-1.1
1,433,129	-		Sama_1173	0.22	+0.9
1,433,129	-		Sama_1173	0.22	+1.6
1,433,129	-		Sama_1173	0.22	-0.6
1,433,313	+		Sama_1173	0.54	-0.1
1,433,313	+		Sama_1173	0.54	+2.3
1,433,369	+		Sama_1173	0.64	-0.5
1,433,370	-		Sama_1173	0.64	-0.5
1,433,374	-		Sama_1173	0.65	-0.6
1,433,387	-		Sama_1173	0.67	-1.1
1,433,387	-		Sama_1173	0.67	+0.3
1,433,387	-		Sama_1173	0.67	+0.2
1,433,407	-		Sama_1173	0.70	-3.2
1,433,530	+				+0.2
1,433,531	-				+0.3
1,433,583	+				+0.9
1,433,630	-				-1.1
1,433,630	-				-0.4
1,433,633	+				-0.2
1,433,640	+				-2.3
1,433,641	-				-0.2
1,433,654	+				+0.7
1,433,654	+				+1.5
1,433,654	+				-1.0
1,433,654	+				-0.4
1,433,658	+				+0.9
1,433,658	+				+1.7
1,433,659	-				-0.6
1,433,692	+				-0.7
1,433,716	+				+1.0
1,433,717	-				-1.6
1,433,731	+				-0.3
1,433,732	-				+0.7
1,433,732	-				-0.8
1,433,753	+				+0.3
1,433,754	-				-0.1