Strain Fitness in Shewanella amazonensis SB2B around Sama_1140

Experiment: Minimal media, pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsB and tsf are separated by 127 nucleotidestsf and pyrH are separated by 68 nucleotidespyrH and frr are separated by 43 nucleotides Sama_1139: rpsB - 30S ribosomal protein S2 (RefSeq), at 1,389,252 to 1,390,028 rpsB Sama_1140: tsf - elongation factor Ts (RefSeq), at 1,390,156 to 1,391,007 tsf Sama_1141: pyrH - uridylate kinase (RefSeq), at 1,391,076 to 1,391,801 pyrH Sama_1142: frr - ribosome recycling factor (RefSeq), at 1,391,845 to 1,392,402 frr Position (kb) 1390 1391 1392Strain fitness (log2 ratio) -2 -1 0 1at 1391.005 kb on + strandat 1391.019 kb on + strandat 1391.019 kb on + strandat 1391.019 kb on + strandat 1391.019 kb on + strandat 1391.057 kb on + strandat 1391.057 kb on + strandat 1391.057 kb on + strandat 1391.057 kb on + strandat 1391.059 kb on + strandat 1391.059 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media, pH7
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1,391,005 + -0.1
1,391,019 + -1.9
1,391,019 + -1.3
1,391,019 + -2.5
1,391,019 + -0.3
1,391,057 + +0.4
1,391,057 + +0.4
1,391,057 + -1.9
1,391,057 + -1.9
1,391,059 + +0.9
1,391,059 + +0.1

Or see this region's nucleotide sequence