Strain Fitness in Shewanella amazonensis SB2B around Sama_0896

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
1,083,544	+		Sama_0895	0.48	+1.8
1,083,544	+		Sama_0895	0.48	+0.2
1,083,551	+		Sama_0895	0.49	-0.2
1,083,551	+		Sama_0895	0.49	-0.7
1,083,552	-		Sama_0895	0.49	-0.7
1,083,552	-		Sama_0895	0.49	+0.7
1,083,595	+		Sama_0895	0.51	+0.3
1,083,603	-		Sama_0895	0.52	+0.4
1,083,616	-		Sama_0895	0.53	-0.9
1,083,616	-		Sama_0895	0.53	-1.7
1,083,623	+		Sama_0895	0.53	-1.8
1,083,624	-		Sama_0895	0.53	+0.4
1,083,700	+		Sama_0895	0.58	-1.0
1,083,700	+		Sama_0895	0.58	-0.6
1,083,701	-		Sama_0895	0.58	+1.5
1,083,710	-		Sama_0895	0.58	-2.3
1,083,722	+		Sama_0895	0.59	-0.1
1,083,733	+		Sama_0895	0.60	+0.2
1,083,733	+		Sama_0895	0.60	-1.2
1,083,733	+		Sama_0895	0.60	+0.6
1,083,734	-		Sama_0895	0.60	-1.3
1,083,836	+		Sama_0895	0.66	-0.5
1,083,836	+		Sama_0895	0.66	+0.4
1,083,836	+		Sama_0895	0.66	+1.0
1,083,837	-		Sama_0895	0.66	-1.2
1,083,864	+		Sama_0895	0.68	+0.5
1,083,864	+		Sama_0895	0.68	+0.1
1,083,865	-		Sama_0895	0.68	-0.7
1,083,865	-		Sama_0895	0.68	+0.4
1,083,931	+		Sama_0895	0.72	-0.1
1,083,952	-		Sama_0895	0.73	+1.0
1,083,986	+		Sama_0895	0.75	+1.0
1,083,987	-		Sama_0895	0.75	+0.4
1,083,987	-		Sama_0895	0.75	+0.3
1,084,022	-		Sama_0895	0.77	-0.3
1,084,048	+		Sama_0895	0.79	-0.2
1,084,048	+		Sama_0895	0.79	+0.9
1,084,048	+		Sama_0895	0.79	-0.5
1,084,049	-		Sama_0895	0.79	+0.5
1,084,049	-		Sama_0895	0.79	+0.6
1,084,049	-		Sama_0895	0.79	+0.5
1,084,052	+		Sama_0895	0.79	-0.3
1,084,052	+		Sama_0895	0.79	-0.2
1,084,052	+		Sama_0895	0.79	-0.1
1,084,052	+		Sama_0895	0.79	-2.1
1,084,052	+		Sama_0895	0.79	-0.1
1,084,052	+		Sama_0895	0.79	-2.7
1,084,052	+		Sama_0895	0.79	+0.0
1,084,053	-		Sama_0895	0.79	+1.3
1,084,053	-		Sama_0895	0.79	-0.5
1,084,053	-		Sama_0895	0.79	-1.3
1,084,053	-		Sama_0895	0.79	-1.2
1,084,053	-		Sama_0895	0.79	-0.3
1,084,063	+		Sama_0895	0.80	-0.1
1,084,063	+		Sama_0895	0.80	-0.9
1,084,063	+		Sama_0895	0.80	-1.4
1,084,064	-		Sama_0895	0.80	+1.6
1,084,131	-		Sama_0895	0.84	+0.4
1,084,131	-		Sama_0895	0.84	-0.1
1,084,273	+				-1.2
1,084,274	-				+0.2
1,084,348	+				-2.0
1,084,349	-				-2.0
1,084,355	-				+0.4
1,084,451	+				-0.9
1,084,451	+				-1.0
1,084,512	+				-0.7
1,084,513	-				+2.0
1,084,615	+		Sama_0896	0.14	+0.8
1,084,615	+		Sama_0896	0.14	-1.3
1,084,616	-		Sama_0896	0.15	+0.7
1,084,619	+		Sama_0896	0.15	+0.1
1,084,620	-		Sama_0896	0.15	+0.0
1,084,621	+		Sama_0896	0.15	+0.7
1,084,622	-		Sama_0896	0.15	+2.0
1,084,636	+		Sama_0896	0.16	+0.5
1,084,682	+		Sama_0896	0.21	-0.0
1,084,682	+		Sama_0896	0.21	+2.3
1,084,683	-		Sama_0896	0.21	+1.2
1,084,684	+		Sama_0896	0.21	-0.6
1,084,684	+		Sama_0896	0.21	-0.3
1,084,684	+		Sama_0896	0.21	+0.8
1,084,684	+		Sama_0896	0.21	-1.0
1,084,684	+		Sama_0896	0.21	+0.3
1,084,684	+		Sama_0896	0.21	-0.0
1,084,684	+		Sama_0896	0.21	-2.1
1,084,684	+		Sama_0896	0.21	+0.7
1,084,684	+		Sama_0896	0.21	+0.2
1,084,684	+		Sama_0896	0.21	+0.5
1,084,685	-		Sama_0896	0.21	-1.8
1,084,685	-		Sama_0896	0.21	+0.1
1,084,764	-		Sama_0896	0.28	+0.3
1,084,764	-		Sama_0896	0.28	+0.9
1,084,774	+		Sama_0896	0.29	-0.3
1,084,825	+		Sama_0896	0.34	+0.5
1,084,825	+		Sama_0896	0.34	-1.8
1,084,837	+		Sama_0896	0.35	+1.0
1,084,838	-		Sama_0896	0.35	+0.4
1,084,853	+		Sama_0896	0.37	-2.0
1,084,863	+		Sama_0896	0.38	+0.0
1,084,864	-		Sama_0896	0.38	+0.3
1,084,897	+		Sama_0896	0.41	-1.3
1,084,898	-		Sama_0896	0.41	+1.6
1,084,977	+		Sama_0896	0.48	-0.5
1,085,033	+		Sama_0896	0.54	+0.4
1,085,037	+		Sama_0896	0.54	+1.0
1,085,037	+		Sama_0896	0.54	+1.4
1,085,037	+		Sama_0896	0.54	-1.3
1,085,037	+		Sama_0896	0.54	+0.5
1,085,050	+		Sama_0896	0.55	+0.0
1,085,050	+		Sama_0896	0.55	-0.7
1,085,050	+		Sama_0896	0.55	+0.3
1,085,050	+		Sama_0896	0.55	-0.4
1,085,050	+		Sama_0896	0.55	-0.7
1,085,051	-		Sama_0896	0.55	+0.0
1,085,051	-		Sama_0896	0.55	+2.9
1,085,069	+		Sama_0896	0.57	+1.6
1,085,069	+		Sama_0896	0.57	-1.2
1,085,147	+		Sama_0896	0.64	-2.1
1,085,147	+		Sama_0896	0.64	-1.3
1,085,147	+		Sama_0896	0.64	+0.9
1,085,147	+		Sama_0896	0.64	-0.9
1,085,147	+		Sama_0896	0.64	-0.3
1,085,147	+		Sama_0896	0.64	-1.4
1,085,147	+		Sama_0896	0.64	-0.9
1,085,147	+		Sama_0896	0.64	+0.2
1,085,147	+		Sama_0896	0.64	+0.7
1,085,147	+		Sama_0896	0.64	-0.7
1,085,147	+		Sama_0896	0.64	+0.0
1,085,147	+		Sama_0896	0.64	+0.0
1,085,147	+		Sama_0896	0.64	+0.4
1,085,147	+		Sama_0896	0.64	+1.0
1,085,147	+		Sama_0896	0.64	-0.5
1,085,147	+		Sama_0896	0.64	+0.8
1,085,147	+		Sama_0896	0.64	+1.1
1,085,147	+		Sama_0896	0.64	+0.0
1,085,147	+		Sama_0896	0.64	-0.5
1,085,147	+		Sama_0896	0.64	-0.6
1,085,147	+		Sama_0896	0.64	-0.0
1,085,147	+		Sama_0896	0.64	+0.0
1,085,147	+		Sama_0896	0.64	-0.1
1,085,148	-		Sama_0896	0.64	-0.4
1,085,148	-		Sama_0896	0.64	+2.5
1,085,148	-		Sama_0896	0.64	-1.0
1,085,148	-		Sama_0896	0.64	-0.7
1,085,148	-		Sama_0896	0.64	-0.3
1,085,148	-		Sama_0896	0.64	+1.6
1,085,148	-		Sama_0896	0.64	+0.5
1,085,148	-		Sama_0896	0.64	+1.0
1,085,148	-		Sama_0896	0.64	+1.4
1,085,148	-		Sama_0896	0.64	-0.0
1,085,148	-		Sama_0896	0.64	-0.5
1,085,148	-		Sama_0896	0.64	-0.3
1,085,148	-		Sama_0896	0.64	+1.0
1,085,148	-		Sama_0896	0.64	-1.3
1,085,148	-		Sama_0896	0.64	+0.3
1,085,148	-		Sama_0896	0.64	+0.2
1,085,168	+		Sama_0896	0.66	+0.7
1,085,168	+		Sama_0896	0.66	+1.0
1,085,168	+		Sama_0896	0.66	-0.5
1,085,168	+		Sama_0896	0.66	+0.5
1,085,168	+		Sama_0896	0.66	-1.3
1,085,168	+		Sama_0896	0.66	-1.2
1,085,169	-		Sama_0896	0.66	-0.1
1,085,169	-		Sama_0896	0.66	-1.0
1,085,170	+		Sama_0896	0.66	+0.7
1,085,170	+		Sama_0896	0.66	+0.6
1,085,170	+		Sama_0896	0.66	-0.3
1,085,171	-		Sama_0896	0.66	+0.7
1,085,182	-		Sama_0896	0.67	-3.4
1,085,281	+		Sama_0896	0.77	+1.0
1,085,281	+		Sama_0896	0.77	+0.9
1,085,299	+		Sama_0896	0.78	+0.5
1,085,299	+		Sama_0896	0.78	-1.2
1,085,299	+		Sama_0896	0.78	+0.3
1,085,299	+		Sama_0896	0.78	+0.2
1,085,299	+		Sama_0896	0.78	-1.4
1,085,300	-		Sama_0896	0.78	-0.1
1,085,353	+		Sama_0896	0.83	-0.7
1,085,354	-		Sama_0896	0.83	+0.8
1,085,358	+		Sama_0896	0.84	+1.7
1,085,358	+		Sama_0896	0.84	-0.8
1,085,358	+		Sama_0896	0.84	-0.1
1,085,359	-		Sama_0896	0.84	-1.1
1,085,359	-		Sama_0896	0.84	-0.0
1,085,359	-		Sama_0896	0.84	-1.5
1,085,359	-		Sama_0896	0.84	-0.4
1,085,401	+		Sama_0896	0.88	+0.6
1,085,476	+				+0.5
1,085,477	-				-0.3
1,085,477	-				-1.4
1,085,477	-				-0.1
1,085,528	+				+0.9
1,085,528	+				-0.5
1,085,537	+				+0.8
1,085,537	+				-1.1
1,085,548	+				-1.1
1,085,548	+				+0.0
1,085,549	-				+0.5
1,085,598	+				+0.5
1,085,598	+				+0.7
1,085,604	+				+0.1
1,085,725	+		Sama_0897	0.13	-0.4
1,085,725	+		Sama_0897	0.13	-1.0
1,085,738	+		Sama_0897	0.16	-2.1
1,085,819	-		Sama_0897	0.38	+0.3
1,085,845	+		Sama_0897	0.45	+0.5
1,085,845	+		Sama_0897	0.45	-2.0
1,085,845	+		Sama_0897	0.45	+0.7
1,085,846	-		Sama_0897	0.45	-1.8
1,085,874	+		Sama_0897	0.52	-3.0
1,085,898	-		Sama_0897	0.59	-1.3
1,085,898	-		Sama_0897	0.59	+0.3
1,086,005	-		Sama_0897	0.87	-1.0
1,086,005	-		Sama_0897	0.87	-0.5
1,086,040	+				-1.2
1,086,040	+				-0.7
1,086,040	+				-1.3
1,086,040	+				-1.5
1,086,050	+				-0.8
1,086,114	+				-2.7
1,086,114	+				-0.5
1,086,115	-				+1.0
1,086,115	-				-0.4
1,086,115	-				+0.8
1,086,115	-				+0.2
1,086,118	-				+0.6
1,086,124	+				-1.0
1,086,157	+				-2.4
1,086,158	-				-3.4
1,086,262	-				-3.7
1,086,265	+				-4.4
1,086,265	+				-3.2
1,086,265	+				-1.8
1,086,265	+				-3.8
1,086,265	+				-4.7
1,086,265	+				-2.7
1,086,265	+				-3.9
1,086,266	-				+0.0
1,086,266	-				-2.0
1,086,266	-				-4.0
1,086,266	-				-1.3
1,086,266	-				-3.2
1,086,266	-				-4.4
1,086,266	-				+1.0
1,086,266	-				-2.1
1,086,266	-				-4.0
1,086,325	-		Sama_0898	0.10	-2.5
1,086,325	-		Sama_0898	0.10	-2.2
1,086,354	-		Sama_0898	0.12	-1.3
1,086,441	-		Sama_0898	0.16	+0.0
1,086,452	+		Sama_0898	0.17	-3.8
1,086,452	+		Sama_0898	0.17	-4.4
1,086,452	+		Sama_0898	0.17	-1.5
1,086,453	-		Sama_0898	0.17	-1.4
1,086,453	-		Sama_0898	0.17	-3.3
1,086,453	-		Sama_0898	0.17	-3.0
1,086,453	-		Sama_0898	0.17	-3.5
1,086,474	+		Sama_0898	0.18	-2.7
1,086,474	+		Sama_0898	0.18	-2.7
1,086,475	-		Sama_0898	0.18	-0.9
1,086,475	-		Sama_0898	0.18	-1.5
1,086,475	-		Sama_0898	0.18	-1.0
1,086,475	-		Sama_0898	0.18	-2.1
1,086,485	+		Sama_0898	0.18	-5.0
1,086,485	+		Sama_0898	0.18	-2.8
1,086,485	+		Sama_0898	0.18	-2.4
1,086,486	-		Sama_0898	0.18	-2.0