Strain Fitness in Shewanella oneidensis MR-1 around SO3310

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3309 and SO3310 are separated by 11 nucleotidesSO3310 and hisS are separated by 12 nucleotides SO3309: SO3309 - PQQ enzyme repeat domain protein (NCBI ptt file), at 3,460,522 to 3,461,709 SO3309 SO3310: SO3310 - conserved hypothetical protein (NCBI ptt file), at 3,461,721 to 3,462,341 SO3310 SO3311: hisS - histidyl-tRNA synthetase (NCBI ptt file), at 3,462,354 to 3,463,631 hisS Position (kb) 3461 3462 3463Strain fitness (log2 ratio) -1 0 1at 3461.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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3,461,771 - -1.7

Or see this region's nucleotide sequence