Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0787 and SO0788 are separated by 820 nucleotides SO0788 and SO0789 are separated by 84 nucleotides
SO0787: SO0787 - hypothetical protein (NCBI ptt file), at 801,628 to 802,071
SO0787
SO0788: SO0788 - conserved hypothetical protein (NCBI ptt file), at 802,892 to 803,137
SO0788
SO0789: SO0789 - putative short chain dehydrogenase (NCBI ptt file), at 803,222 to 803,839
SO0789
Position (kb) 802
803
804 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 801.938 kb on + strand, within SO0787 at 801.946 kb on + strand, within SO0787 at 801.952 kb on + strand, within SO0787 at 802.004 kb on + strand, within SO0787 at 802.004 kb on + strand, within SO0787 at 802.004 kb on + strand, within SO0787 at 802.009 kb on + strand, within SO0787 at 802.009 kb on + strand, within SO0787 at 802.012 kb on - strand, within SO0787 at 802.012 kb on - strand, within SO0787 at 802.012 kb on - strand, within SO0787 at 802.014 kb on + strand, within SO0787 at 802.014 kb on + strand, within SO0787 at 802.018 kb on + strand, within SO0787 at 802.022 kb on - strand, within SO0787 at 802.022 kb on - strand, within SO0787 at 802.022 kb on - strand, within SO0787 at 802.022 kb on - strand, within SO0787 at 802.023 kb on + strand, within SO0787 at 802.023 kb on + strand, within SO0787 at 802.023 kb on + strand, within SO0787 at 802.023 kb on + strand, within SO0787 at 802.023 kb on + strand, within SO0787 at 802.023 kb on + strand, within SO0787 at 802.028 kb on + strand at 802.031 kb on - strand at 802.031 kb on - strand at 802.031 kb on - strand at 802.031 kb on - strand at 802.031 kb on - strand at 802.031 kb on - strand at 802.031 kb on - strand at 802.031 kb on - strand at 802.031 kb on - strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.033 kb on + strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.041 kb on - strand at 802.081 kb on + strand at 802.087 kb on - strand at 802.087 kb on - strand at 802.089 kb on - strand at 802.091 kb on + strand at 802.111 kb on + strand at 802.111 kb on + strand at 802.111 kb on + strand at 802.119 kb on + strand at 802.119 kb on - strand at 802.123 kb on + strand at 802.124 kb on + strand at 802.126 kb on + strand at 802.129 kb on + strand at 802.129 kb on - strand at 802.131 kb on + strand at 802.131 kb on + strand at 802.132 kb on - strand at 802.141 kb on - strand at 802.181 kb on + strand at 802.181 kb on + strand at 802.186 kb on + strand at 802.186 kb on + strand at 802.186 kb on + strand at 802.193 kb on - strand at 802.194 kb on - strand at 802.194 kb on - strand at 802.194 kb on - strand at 802.194 kb on - strand at 802.194 kb on - strand at 802.194 kb on - strand at 802.194 kb on - strand at 802.206 kb on + strand at 802.219 kb on - strand at 802.242 kb on + strand at 802.243 kb on + strand at 802.243 kb on + strand at 802.250 kb on - strand at 802.250 kb on - strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.274 kb on + strand at 802.277 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.282 kb on - strand at 802.285 kb on - strand at 802.292 kb on - strand at 802.333 kb on + strand at 802.338 kb on + strand at 802.338 kb on + strand at 802.341 kb on - strand at 802.344 kb on + strand at 802.344 kb on + strand at 802.346 kb on - strand at 802.349 kb on + strand at 802.352 kb on - strand at 802.352 kb on - strand at 802.352 kb on - strand at 802.361 kb on + strand at 802.361 kb on + strand at 802.361 kb on + strand at 802.361 kb on + strand at 802.361 kb on + strand at 802.361 kb on + strand at 802.361 kb on + strand at 802.368 kb on + strand at 802.369 kb on - strand at 802.369 kb on - strand at 802.370 kb on + strand at 802.375 kb on + strand at 802.375 kb on + strand at 802.380 kb on + strand at 802.380 kb on + strand at 802.380 kb on + strand at 802.380 kb on + strand at 802.380 kb on + strand at 802.380 kb on + strand at 802.380 kb on + strand at 802.383 kb on - strand at 802.383 kb on - strand at 802.385 kb on + strand at 802.387 kb on + strand at 802.387 kb on + strand at 802.388 kb on - strand at 802.388 kb on - strand at 802.388 kb on - strand at 802.388 kb on - strand at 802.388 kb on - strand at 802.388 kb on - strand at 802.388 kb on - strand at 802.388 kb on - strand at 802.390 kb on - strand at 802.390 kb on - strand at 802.390 kb on - strand at 802.395 kb on - strand at 802.429 kb on + strand at 802.429 kb on + strand at 802.429 kb on + strand at 802.430 kb on + strand at 802.436 kb on + strand at 802.436 kb on + strand at 802.436 kb on + strand at 802.436 kb on + strand at 802.436 kb on + strand at 802.436 kb on + strand at 802.436 kb on + strand at 802.437 kb on - strand at 802.444 kb on - strand at 802.444 kb on - strand at 802.446 kb on + strand at 802.539 kb on - strand at 802.558 kb on + strand at 802.644 kb on + strand at 802.644 kb on + strand at 802.652 kb on + strand at 802.670 kb on - strand at 802.677 kb on + strand at 802.677 kb on + strand at 802.677 kb on + strand at 802.677 kb on + strand at 802.685 kb on - strand at 802.685 kb on - strand at 802.685 kb on - strand at 802.685 kb on - strand at 802.685 kb on - strand at 802.685 kb on - strand at 802.711 kb on - strand at 802.718 kb on + strand at 802.734 kb on - strand at 802.754 kb on - strand at 802.758 kb on + strand at 802.768 kb on + strand at 802.772 kb on + strand at 802.776 kb on - strand at 802.832 kb on - strand at 802.853 kb on + strand at 802.859 kb on + strand at 802.859 kb on + strand at 802.860 kb on + strand at 802.860 kb on - strand at 802.860 kb on - strand at 802.867 kb on - strand at 802.867 kb on - strand at 802.867 kb on - strand at 802.868 kb on - strand at 802.868 kb on - strand at 802.868 kb on - strand at 802.873 kb on + strand at 802.873 kb on + strand at 802.875 kb on + strand at 802.875 kb on + strand at 802.875 kb on + strand at 802.883 kb on - strand at 802.883 kb on - strand at 802.883 kb on - strand at 802.883 kb on - strand at 802.883 kb on - strand at 802.933 kb on - strand, within SO0788 at 802.972 kb on + strand, within SO0788 at 802.972 kb on + strand, within SO0788 at 802.972 kb on - strand, within SO0788 at 802.976 kb on + strand, within SO0788 at 802.980 kb on - strand, within SO0788 at 802.982 kb on + strand, within SO0788 at 802.997 kb on + strand, within SO0788 at 803.038 kb on + strand, within SO0788 at 803.040 kb on + strand, within SO0788 at 803.066 kb on + strand, within SO0788 at 803.066 kb on + strand, within SO0788 at 803.071 kb on + strand, within SO0788 at 803.071 kb on + strand, within SO0788 at 803.071 kb on + strand, within SO0788 at 803.072 kb on - strand, within SO0788 at 803.074 kb on - strand, within SO0788 at 803.079 kb on - strand, within SO0788 at 803.127 kb on - strand at 803.128 kb on + strand at 803.154 kb on + strand at 803.170 kb on + strand at 803.193 kb on + strand at 803.219 kb on + strand at 803.273 kb on + strand at 803.281 kb on - strand at 803.281 kb on - strand at 803.374 kb on - strand, within SO0789 at 803.382 kb on - strand, within SO0789 at 803.396 kb on - strand, within SO0789 at 803.559 kb on + strand, within SO0789 at 803.563 kb on + strand, within SO0789 at 803.593 kb on - strand, within SO0789 at 803.620 kb on + strand, within SO0789 at 803.628 kb on - strand, within SO0789 at 803.629 kb on + strand, within SO0789 at 803.636 kb on - strand, within SO0789 at 803.637 kb on - strand, within SO0789 at 803.652 kb on - strand, within SO0789 at 803.670 kb on + strand, within SO0789 at 803.683 kb on + strand, within SO0789 at 803.783 kb on - strand at 803.783 kb on - strand at 803.783 kb on - strand at 803.789 kb on + strand at 803.794 kb on + strand at 803.867 kb on + strand at 803.962 kb on - strand at 803.988 kb on + strand at 803.996 kb on - strand at 804.000 kb on + strand at 804.010 kb on + strand at 804.010 kb on + strand at 804.010 kb on + strand at 804.018 kb on - strand at 804.018 kb on - strand at 804.025 kb on + strand at 804.027 kb on - strand at 804.027 kb on - strand at 804.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 801,938 + SO0787 0.70 +0.3 801,946 + SO0787 0.72 -0.6 801,952 + SO0787 0.73 -0.5 802,004 + SO0787 0.85 -1.2 802,004 + SO0787 0.85 -0.3 802,004 + SO0787 0.85 +0.9 802,009 + SO0787 0.86 -0.7 802,009 + SO0787 0.86 +0.3 802,012 - SO0787 0.86 -0.2 802,012 - SO0787 0.86 +0.8 802,012 - SO0787 0.86 -0.8 802,014 + SO0787 0.87 -0.9 802,014 + SO0787 0.87 +0.6 802,018 + SO0787 0.88 +0.1 802,022 - SO0787 0.89 +1.0 802,022 - SO0787 0.89 -0.6 802,022 - SO0787 0.89 +0.4 802,022 - SO0787 0.89 -0.5 802,023 + SO0787 0.89 -0.1 802,023 + SO0787 0.89 +0.2 802,023 + SO0787 0.89 +0.0 802,023 + SO0787 0.89 +1.1 802,023 + SO0787 0.89 +0.5 802,023 + SO0787 0.89 +0.2 802,028 + +0.3 802,031 - +0.3 802,031 - -0.7 802,031 - +0.2 802,031 - +1.2 802,031 - -0.4 802,031 - +0.7 802,031 - -0.1 802,031 - +0.3 802,031 - +0.2 802,033 + -0.9 802,033 + +0.2 802,033 + -1.0 802,033 + +0.3 802,033 + +0.0 802,033 + +0.6 802,033 + -0.3 802,033 + -0.2 802,033 + +0.6 802,033 + -0.1 802,033 + +2.0 802,033 + +0.2 802,033 + +0.7 802,033 + -0.7 802,033 + -0.8 802,041 - +0.7 802,041 - +0.5 802,041 - -0.0 802,041 - -1.8 802,041 - -0.5 802,041 - +0.3 802,041 - +0.2 802,041 - -0.6 802,041 - -0.8 802,041 - -0.5 802,041 - +0.2 802,041 - -0.0 802,041 - -0.0 802,041 - +0.6 802,041 - -0.0 802,081 + +0.0 802,087 - -0.3 802,087 - -0.8 802,089 - +0.2 802,091 + +0.7 802,111 + +0.2 802,111 + -0.7 802,111 + -0.0 802,119 + +0.4 802,119 - +0.1 802,123 + +1.2 802,124 + +0.4 802,126 + -0.4 802,129 + +0.0 802,129 - -0.7 802,131 + -1.1 802,131 + -0.5 802,132 - +0.8 802,141 - +1.0 802,181 + -0.0 802,181 + -0.2 802,186 + +1.3 802,186 + +1.1 802,186 + +0.7 802,193 - +0.1 802,194 - +0.7 802,194 - -0.8 802,194 - +0.4 802,194 - +0.7 802,194 - -1.4 802,194 - -0.4 802,194 - +0.0 802,206 + -0.1 802,219 - -0.7 802,242 + +0.4 802,243 + -1.8 802,243 + +0.9 802,250 - -0.9 802,250 - +0.6 802,274 + -0.3 802,274 + -1.5 802,274 + -0.0 802,274 + -0.3 802,274 + -4.4 802,274 + +0.0 802,274 + +0.6 802,274 + -0.9 802,274 + +0.6 802,274 + +0.6 802,274 + -0.3 802,274 + +1.5 802,274 + +0.1 802,277 - -1.7 802,282 - +0.2 802,282 - +0.6 802,282 - +0.2 802,282 - -0.9 802,282 - +0.5 802,282 - +0.2 802,282 - -0.7 802,282 - +1.4 802,282 - +0.2 802,282 - -0.6 802,282 - +0.7 802,282 - -0.4 802,282 - -0.3 802,282 - -0.6 802,282 - +0.5 802,282 - -0.0 802,282 - +0.1 802,285 - -0.7 802,292 - +0.4 802,333 + +0.2 802,338 + +0.2 802,338 + -3.2 802,341 - -1.1 802,344 + +0.8 802,344 + +0.8 802,346 - -0.4 802,349 + -0.1 802,352 - -0.7 802,352 - +0.2 802,352 - -0.3 802,361 + +0.0 802,361 + +0.1 802,361 + +1.1 802,361 + -0.7 802,361 + +0.3 802,361 + -0.5 802,361 + -0.7 802,368 + +1.8 802,369 - +1.5 802,369 - -1.1 802,370 + +0.1 802,375 + +0.8 802,375 + -1.6 802,380 + -0.2 802,380 + +0.7 802,380 + -1.9 802,380 + +0.6 802,380 + -0.2 802,380 + -1.7 802,380 + -0.4 802,383 - -1.0 802,383 - +0.5 802,385 + +0.2 802,387 + +0.2 802,387 + +0.1 802,388 - +0.4 802,388 - -0.0 802,388 - -0.6 802,388 - +4.1 802,388 - -1.5 802,388 - +0.0 802,388 - -0.6 802,388 - +0.1 802,390 - +0.3 802,390 - -0.4 802,390 - -0.1 802,395 - -1.4 802,429 + -0.5 802,429 + +0.7 802,429 + -1.4 802,430 + +0.9 802,436 + +0.4 802,436 + -1.6 802,436 + -0.7 802,436 + -0.5 802,436 + +0.3 802,436 + +0.0 802,436 + +0.6 802,437 - +0.4 802,444 - -0.6 802,444 - -0.4 802,446 + -1.4 802,539 - -0.1 802,558 + -0.4 802,644 + -0.7 802,644 + +0.6 802,652 + -0.0 802,670 - +0.1 802,677 + +1.7 802,677 + -0.1 802,677 + -0.1 802,677 + -0.5 802,685 - -0.2 802,685 - -0.9 802,685 - +0.2 802,685 - +0.5 802,685 - -0.7 802,685 - +0.1 802,711 - -0.2 802,718 + -0.5 802,734 - +0.8 802,754 - -0.3 802,758 + -1.9 802,768 + +0.2 802,772 + +0.8 802,776 - +0.3 802,832 - +0.7 802,853 + +0.3 802,859 + +0.8 802,859 + -0.1 802,860 + -1.2 802,860 - -1.6 802,860 - +0.5 802,867 - -0.5 802,867 - -1.1 802,867 - +0.3 802,868 - -0.1 802,868 - +0.6 802,868 - +0.5 802,873 + -0.5 802,873 + +0.7 802,875 + -0.2 802,875 + -0.0 802,875 + -0.0 802,883 - -0.7 802,883 - -0.3 802,883 - -0.2 802,883 - +0.3 802,883 - +0.2 802,933 - SO0788 0.17 +0.4 802,972 + SO0788 0.33 +0.0 802,972 + SO0788 0.33 +0.8 802,972 - SO0788 0.33 +0.4 802,976 + SO0788 0.34 -1.0 802,980 - SO0788 0.36 +0.7 802,982 + SO0788 0.37 +0.9 802,997 + SO0788 0.43 +0.5 803,038 + SO0788 0.59 +0.5 803,040 + SO0788 0.60 +1.3 803,066 + SO0788 0.71 -1.0 803,066 + SO0788 0.71 -0.4 803,071 + SO0788 0.73 +0.8 803,071 + SO0788 0.73 -2.4 803,071 + SO0788 0.73 +0.6 803,072 - SO0788 0.73 -0.0 803,074 - SO0788 0.74 +0.3 803,079 - SO0788 0.76 +0.8 803,127 - -1.2 803,128 + +0.4 803,154 + +0.4 803,170 + -0.2 803,193 + +0.6 803,219 + +0.1 803,273 + -0.1 803,281 - -0.4 803,281 - -0.2 803,374 - SO0789 0.25 +0.0 803,382 - SO0789 0.26 -0.1 803,396 - SO0789 0.28 +0.3 803,559 + SO0789 0.55 +2.2 803,563 + SO0789 0.55 +0.5 803,593 - SO0789 0.60 +0.4 803,620 + SO0789 0.64 -1.1 803,628 - SO0789 0.66 +0.7 803,629 + SO0789 0.66 -0.7 803,636 - SO0789 0.67 -0.7 803,637 - SO0789 0.67 +0.0 803,652 - SO0789 0.70 -0.5 803,670 + SO0789 0.72 +1.9 803,683 + SO0789 0.75 +0.4 803,783 - -0.9 803,783 - +0.4 803,783 - -0.3 803,789 + -0.7 803,794 + +0.1 803,867 + +1.3 803,962 - -0.4 803,988 + -1.1 803,996 - +0.9 804,000 + +0.9 804,010 + +0.4 804,010 + -0.2 804,010 + +0.8 804,018 - -0.8 804,018 - -1.0 804,025 + -0.3 804,027 - +0.2 804,027 - -1.2 804,033 - +1.1
Or see this region's nucleotide sequence