Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0745 and SO0746 are separated by 6 nucleotides SO0746 and fpr are separated by 65 nucleotides fpr and SO0748 are separated by 122 nucleotides SO0748 and SO0749 are separated by 107 nucleotides
SO0745: SO0745 - hypothetical protein (NCBI ptt file), at 763,509 to 763,928
SO0745
SO0746: SO0746 - glutathione S-transferase family protein (NCBI ptt file), at 763,935 to 764,531
SO0746
SO0747: fpr - ferredoxin--NADP reductase (NCBI ptt file), at 764,597 to 765,346
fpr
SO0748: SO0748 - hypothetical protein (NCBI ptt file), at 765,469 to 766,146
SO0748
SO0749: SO0749 - conserved hypothetical protein (NCBI ptt file), at 766,254 to 766,847
SO0749
Position (kb) 764
765
766 Strain fitness (log2 ratio) -2
-1
0
1 at 763.626 kb on + strand, within SO0745 at 763.634 kb on - strand, within SO0745 at 763.634 kb on - strand, within SO0745 at 763.636 kb on - strand, within SO0745 at 763.649 kb on - strand, within SO0745 at 763.698 kb on + strand, within SO0745 at 763.781 kb on - strand, within SO0745 at 763.811 kb on + strand, within SO0745 at 763.811 kb on + strand, within SO0745 at 763.898 kb on + strand at 763.906 kb on - strand at 763.932 kb on + strand at 763.940 kb on - strand at 763.979 kb on + strand at 764.067 kb on + strand, within SO0746 at 764.075 kb on - strand, within SO0746 at 764.236 kb on - strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.271 kb on + strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.279 kb on - strand, within SO0746 at 764.404 kb on - strand, within SO0746 at 764.416 kb on + strand, within SO0746 at 764.437 kb on + strand, within SO0746 at 764.496 kb on + strand at 764.497 kb on + strand at 764.497 kb on + strand at 764.505 kb on - strand at 764.510 kb on - strand at 764.682 kb on + strand, within fpr at 764.716 kb on + strand, within fpr at 764.778 kb on - strand, within fpr at 764.829 kb on + strand, within fpr at 764.829 kb on + strand, within fpr at 764.837 kb on - strand, within fpr at 764.897 kb on + strand, within fpr at 764.897 kb on + strand, within fpr at 764.899 kb on - strand, within fpr at 764.905 kb on - strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.916 kb on + strand, within fpr at 764.924 kb on - strand, within fpr at 764.924 kb on - strand, within fpr at 764.953 kb on + strand, within fpr at 764.953 kb on + strand, within fpr at 764.999 kb on - strand, within fpr at 765.036 kb on + strand, within fpr at 765.044 kb on - strand, within fpr at 765.044 kb on - strand, within fpr at 765.044 kb on - strand, within fpr at 765.044 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.065 kb on - strand, within fpr at 765.173 kb on - strand, within fpr at 765.202 kb on - strand, within fpr at 765.238 kb on + strand, within fpr at 765.383 kb on + strand at 765.426 kb on + strand at 765.453 kb on + strand at 765.475 kb on - strand at 765.475 kb on - strand at 765.584 kb on - strand, within SO0748 at 765.584 kb on - strand, within SO0748 at 765.584 kb on - strand, within SO0748 at 765.584 kb on - strand, within SO0748 at 765.599 kb on - strand, within SO0748 at 765.614 kb on - strand, within SO0748 at 765.614 kb on - strand, within SO0748 at 765.743 kb on + strand, within SO0748 at 765.745 kb on - strand, within SO0748 at 765.754 kb on + strand, within SO0748 at 766.025 kb on + strand, within SO0748 at 766.025 kb on + strand, within SO0748 at 766.025 kb on + strand, within SO0748 at 766.030 kb on + strand, within SO0748 at 766.035 kb on + strand, within SO0748 at 766.038 kb on - strand, within SO0748 at 766.152 kb on - strand at 766.216 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 763,626 + SO0745 0.28 -0.3 763,634 - SO0745 0.30 -0.0 763,634 - SO0745 0.30 -1.8 763,636 - SO0745 0.30 +0.2 763,649 - SO0745 0.33 -0.5 763,698 + SO0745 0.45 +0.7 763,781 - SO0745 0.65 +0.2 763,811 + SO0745 0.72 +0.6 763,811 + SO0745 0.72 -0.3 763,898 + -0.6 763,906 - +0.0 763,932 + -0.4 763,940 - +0.1 763,979 + +0.4 764,067 + SO0746 0.22 +0.8 764,075 - SO0746 0.23 +1.0 764,236 - SO0746 0.50 -0.2 764,271 + SO0746 0.56 -0.3 764,271 + SO0746 0.56 -0.2 764,271 + SO0746 0.56 +0.8 764,271 + SO0746 0.56 -1.3 764,271 + SO0746 0.56 +0.4 764,271 + SO0746 0.56 -0.2 764,279 - SO0746 0.58 +1.0 764,279 - SO0746 0.58 +0.1 764,279 - SO0746 0.58 +0.3 764,279 - SO0746 0.58 -0.4 764,404 - SO0746 0.79 +0.2 764,416 + SO0746 0.81 -0.1 764,437 + SO0746 0.84 -0.6 764,496 + -0.6 764,497 + +0.8 764,497 + -0.3 764,505 - -0.1 764,510 - -0.1 764,682 + fpr SO0747 0.11 -0.9 764,716 + fpr SO0747 0.16 -1.4 764,778 - fpr SO0747 0.24 -2.0 764,829 + fpr SO0747 0.31 -1.6 764,829 + fpr SO0747 0.31 -1.6 764,837 - fpr SO0747 0.32 -1.9 764,897 + fpr SO0747 0.40 -1.6 764,897 + fpr SO0747 0.40 -2.0 764,899 - fpr SO0747 0.40 -1.8 764,905 - fpr SO0747 0.41 -1.3 764,916 + fpr SO0747 0.43 +1.1 764,916 + fpr SO0747 0.43 -1.6 764,916 + fpr SO0747 0.43 -1.3 764,916 + fpr SO0747 0.43 -1.6 764,916 + fpr SO0747 0.43 -0.6 764,924 - fpr SO0747 0.44 -0.7 764,924 - fpr SO0747 0.44 -1.3 764,953 + fpr SO0747 0.47 -0.6 764,953 + fpr SO0747 0.47 -2.0 764,999 - fpr SO0747 0.54 -2.2 765,036 + fpr SO0747 0.59 -0.4 765,044 - fpr SO0747 0.60 -1.7 765,044 - fpr SO0747 0.60 -0.2 765,044 - fpr SO0747 0.60 -0.8 765,044 - fpr SO0747 0.60 -1.6 765,065 - fpr SO0747 0.62 -0.4 765,065 - fpr SO0747 0.62 -2.7 765,065 - fpr SO0747 0.62 -1.1 765,065 - fpr SO0747 0.62 -1.3 765,173 - fpr SO0747 0.77 -0.7 765,202 - fpr SO0747 0.81 -2.5 765,238 + fpr SO0747 0.85 -1.6 765,383 + -1.3 765,426 + +0.1 765,453 + +0.5 765,475 - +0.2 765,475 - +0.2 765,584 - SO0748 0.17 -1.1 765,584 - SO0748 0.17 -0.7 765,584 - SO0748 0.17 -0.7 765,584 - SO0748 0.17 -0.2 765,599 - SO0748 0.19 +0.8 765,614 - SO0748 0.21 -0.0 765,614 - SO0748 0.21 +1.0 765,743 + SO0748 0.40 -0.5 765,745 - SO0748 0.41 -0.5 765,754 + SO0748 0.42 -0.5 766,025 + SO0748 0.82 -0.3 766,025 + SO0748 0.82 -0.6 766,025 + SO0748 0.82 +0.3 766,030 + SO0748 0.83 -0.6 766,035 + SO0748 0.83 +0.7 766,038 - SO0748 0.84 +0.6 766,152 - +0.2 766,216 - -0.5
Or see this region's nucleotide sequence