Strain Fitness in Shewanella oneidensis MR-1 around SO0549

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0547 and SO0548 are separated by 293 nucleotidesSO0548 and SO0549 are separated by 146 nucleotidesSO0549 and SO0550 are separated by 67 nucleotidesSO0550 and SO0551 are separated by 89 nucleotides SO0547: SO0547 - conserved hypothetical protein (NCBI ptt file), at 569,883 to 570,575 SO0547 SO0548: SO0548 - DNA-binding protein, HU family (NCBI ptt file), at 570,869 to 571,141 SO0548 SO0549: SO0549 - chemotaxis protein CheY/response regulator receiver domain protein (NCBI ptt file), at 571,288 to 572,091 SO0549 SO0550: SO0550 - hypothetical protein (NCBI ptt file), at 572,159 to 572,578 SO0550 SO0551: SO0551 - conserved hypothetical protein (NCBI ptt file), at 572,668 to 573,177 SO0551 Position (kb) 571 572 573Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 570.325 kb on + strand, within SO0547at 570.447 kb on + strand, within SO0547at 570.513 kb on + strandat 570.808 kb on - strandat 570.809 kb on - strandat 570.839 kb on - strandat 570.870 kb on - strandat 570.900 kb on + strand, within SO0548at 571.080 kb on + strand, within SO0548at 571.086 kb on + strand, within SO0548at 571.126 kb on + strandat 571.134 kb on - strandat 571.134 kb on - strandat 571.198 kb on + strandat 571.198 kb on + strandat 571.199 kb on + strandat 571.211 kb on + strandat 571.216 kb on + strandat 571.381 kb on + strand, within SO0549at 571.389 kb on - strand, within SO0549at 571.409 kb on - strand, within SO0549at 571.484 kb on - strand, within SO0549at 571.539 kb on - strand, within SO0549at 571.563 kb on - strand, within SO0549at 571.630 kb on + strand, within SO0549at 571.682 kb on + strand, within SO0549at 571.682 kb on + strand, within SO0549at 571.694 kb on - strand, within SO0549at 571.694 kb on - strand, within SO0549at 571.726 kb on + strand, within SO0549at 571.893 kb on + strand, within SO0549at 571.945 kb on - strand, within SO0549at 572.089 kb on - strandat 572.094 kb on + strandat 572.123 kb on - strandat 572.211 kb on + strand, within SO0550at 572.211 kb on + strand, within SO0550at 572.252 kb on - strand, within SO0550at 572.269 kb on - strand, within SO0550at 572.278 kb on - strand, within SO0550at 572.305 kb on - strand, within SO0550at 572.331 kb on + strand, within SO0550at 572.336 kb on + strand, within SO0550at 572.350 kb on + strand, within SO0550at 572.351 kb on + strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.358 kb on - strand, within SO0550at 572.389 kb on + strand, within SO0550at 572.397 kb on - strand, within SO0550at 572.429 kb on + strand, within SO0550at 572.437 kb on + strand, within SO0550at 572.437 kb on + strand, within SO0550at 572.444 kb on + strand, within SO0550at 572.445 kb on - strand, within SO0550at 572.445 kb on - strand, within SO0550at 572.452 kb on + strand, within SO0550at 572.460 kb on - strand, within SO0550at 572.475 kb on + strand, within SO0550at 572.475 kb on + strand, within SO0550at 572.475 kb on + strand, within SO0550at 572.483 kb on - strand, within SO0550at 572.493 kb on - strand, within SO0550at 572.512 kb on + strand, within SO0550at 572.544 kb on + strandat 572.552 kb on - strandat 572.573 kb on + strandat 572.598 kb on - strandat 572.608 kb on - strandat 572.628 kb on + strandat 572.727 kb on + strand, within SO0551at 572.735 kb on - strand, within SO0551at 572.777 kb on + strand, within SO0551at 572.844 kb on - strand, within SO0551at 572.856 kb on - strand, within SO0551at 572.934 kb on - strand, within SO0551

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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570,325 + SO0547 0.64 -3.0
570,447 + SO0547 0.81 -2.1
570,513 + -2.3
570,808 - +0.6
570,809 - +0.2
570,839 - -0.1
570,870 - -0.1
570,900 + SO0548 0.11 +0.4
571,080 + SO0548 0.77 +1.2
571,086 + SO0548 0.79 +0.8
571,126 + -0.3
571,134 - -0.5
571,134 - -1.0
571,198 + +0.5
571,198 + +0.4
571,199 + +0.5
571,211 + +1.0
571,216 + +0.7
571,381 + SO0549 0.12 +0.4
571,389 - SO0549 0.13 +0.0
571,409 - SO0549 0.15 -0.1
571,484 - SO0549 0.24 -0.9
571,539 - SO0549 0.31 +1.5
571,563 - SO0549 0.34 -0.1
571,630 + SO0549 0.43 +0.1
571,682 + SO0549 0.49 +0.6
571,682 + SO0549 0.49 -0.5
571,694 - SO0549 0.50 -0.1
571,694 - SO0549 0.50 +0.3
571,726 + SO0549 0.54 -0.1
571,893 + SO0549 0.75 -0.5
571,945 - SO0549 0.82 +0.5
572,089 - -0.4
572,094 + -0.9
572,123 - -0.3
572,211 + SO0550 0.12 -0.4
572,211 + SO0550 0.12 +0.1
572,252 - SO0550 0.22 -0.3
572,269 - SO0550 0.26 +0.8
572,278 - SO0550 0.28 +0.1
572,305 - SO0550 0.35 -0.3
572,331 + SO0550 0.41 +0.5
572,336 + SO0550 0.42 -0.7
572,350 + SO0550 0.45 -1.1
572,351 + SO0550 0.46 +0.0
572,358 - SO0550 0.47 -1.0
572,358 - SO0550 0.47 -0.5
572,358 - SO0550 0.47 +0.6
572,358 - SO0550 0.47 -0.4
572,358 - SO0550 0.47 +2.1
572,358 - SO0550 0.47 -0.3
572,358 - SO0550 0.47 -0.3
572,389 + SO0550 0.55 +0.5
572,397 - SO0550 0.57 +0.5
572,429 + SO0550 0.64 -1.7
572,437 + SO0550 0.66 +1.4
572,437 + SO0550 0.66 -0.1
572,444 + SO0550 0.68 +0.2
572,445 - SO0550 0.68 +0.9
572,445 - SO0550 0.68 +0.4
572,452 + SO0550 0.70 -0.7
572,460 - SO0550 0.72 +0.3
572,475 + SO0550 0.75 +0.3
572,475 + SO0550 0.75 +0.2
572,475 + SO0550 0.75 -1.3
572,483 - SO0550 0.77 -0.5
572,493 - SO0550 0.80 -0.6
572,512 + SO0550 0.84 +0.3
572,544 + +0.2
572,552 - -0.7
572,573 + -0.9
572,598 - +0.6
572,608 - -0.1
572,628 + +0.4
572,727 + SO0551 0.12 -1.4
572,735 - SO0551 0.13 +0.3
572,777 + SO0551 0.21 +0.3
572,844 - SO0551 0.35 +0.2
572,856 - SO0551 0.37 -0.9
572,934 - SO0551 0.52 -1.1

Or see this region's nucleotide sequence