Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sun and fmt are separated by 2 nucleotides fmt and def-1 are separated by 15 nucleotides def-1 and SO0033 are separated by 125 nucleotides
SO0030: sun - sun protein (NCBI ptt file), at 35,131 to 36,417
sun
SO0031: fmt - methionyl-tRNA formyltransferase (NCBI ptt file), at 36,420 to 37,376
fmt
SO0032: def-1 - polypeptide deformylase (NCBI ptt file), at 37,392 to 37,898
def-1
SO0033: SO0033 - LysM domain protein (NCBI ptt file), at 38,024 to 39,160
SO0033
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.663 kb on - strand, within sun at 35.730 kb on + strand, within sun at 35.740 kb on + strand, within sun at 35.764 kb on - strand, within sun at 35.843 kb on + strand, within sun at 35.843 kb on + strand, within sun at 35.915 kb on - strand, within sun at 35.922 kb on + strand, within sun at 35.937 kb on + strand, within sun at 35.937 kb on + strand, within sun at 36.046 kb on + strand, within sun at 36.068 kb on + strand, within sun at 36.120 kb on - strand, within sun at 36.142 kb on + strand, within sun at 36.190 kb on - strand, within sun at 36.227 kb on + strand, within sun at 36.276 kb on + strand, within sun at 36.286 kb on + strand, within sun at 36.286 kb on - strand, within sun at 36.303 kb on - strand at 36.359 kb on - strand at 36.460 kb on - strand at 37.454 kb on - strand, within def-1 at 37.488 kb on - strand, within def-1 at 37.488 kb on - strand, within def-1 at 37.563 kb on - strand, within def-1 at 37.576 kb on - strand, within def-1 at 37.601 kb on - strand, within def-1 at 37.637 kb on - strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.834 kb on + strand, within def-1 at 37.875 kb on + strand at 37.883 kb on - strand at 37.947 kb on + strand at 37.955 kb on - strand at 37.955 kb on - strand at 37.955 kb on - strand at 38.001 kb on - strand at 38.068 kb on - strand at 38.068 kb on - strand at 38.260 kb on + strand, within SO0033 at 38.265 kb on + strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.330 kb on + strand, within SO0033
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 35,663 - sun SO0030 0.41 +0.1 35,730 + sun SO0030 0.47 +0.2 35,740 + sun SO0030 0.47 +0.7 35,764 - sun SO0030 0.49 +0.5 35,843 + sun SO0030 0.55 +0.4 35,843 + sun SO0030 0.55 +0.9 35,915 - sun SO0030 0.61 +0.4 35,922 + sun SO0030 0.61 -0.5 35,937 + sun SO0030 0.63 +1.1 35,937 + sun SO0030 0.63 +0.3 36,046 + sun SO0030 0.71 +0.6 36,068 + sun SO0030 0.73 +0.6 36,120 - sun SO0030 0.77 +0.0 36,142 + sun SO0030 0.79 +0.6 36,190 - sun SO0030 0.82 +0.6 36,227 + sun SO0030 0.85 +2.3 36,276 + sun SO0030 0.89 +1.1 36,286 + sun SO0030 0.90 +0.2 36,286 - sun SO0030 0.90 +0.5 36,303 - +0.8 36,359 - -0.3 36,460 - +0.2 37,454 - def-1 SO0032 0.12 -1.8 37,488 - def-1 SO0032 0.19 -1.3 37,488 - def-1 SO0032 0.19 -3.2 37,563 - def-1 SO0032 0.34 -0.2 37,576 - def-1 SO0032 0.36 -2.0 37,601 - def-1 SO0032 0.41 +0.0 37,637 - def-1 SO0032 0.48 -2.3 37,822 + def-1 SO0032 0.85 +0.2 37,822 + def-1 SO0032 0.85 -1.8 37,822 + def-1 SO0032 0.85 +0.1 37,822 + def-1 SO0032 0.85 +0.5 37,822 + def-1 SO0032 0.85 -0.6 37,822 + def-1 SO0032 0.85 -0.9 37,822 + def-1 SO0032 0.85 -0.3 37,822 + def-1 SO0032 0.85 -0.3 37,822 + def-1 SO0032 0.85 +0.1 37,830 - def-1 SO0032 0.86 -1.3 37,830 - def-1 SO0032 0.86 -2.0 37,830 - def-1 SO0032 0.86 -2.6 37,830 - def-1 SO0032 0.86 -1.3 37,830 - def-1 SO0032 0.86 -0.4 37,830 - def-1 SO0032 0.86 -1.5 37,830 - def-1 SO0032 0.86 -0.4 37,830 - def-1 SO0032 0.86 -0.4 37,830 - def-1 SO0032 0.86 -0.3 37,830 - def-1 SO0032 0.86 -1.4 37,830 - def-1 SO0032 0.86 -2.0 37,834 + def-1 SO0032 0.87 -0.3 37,875 + -1.5 37,883 - -0.2 37,947 + +0.4 37,955 - -0.8 37,955 - -0.0 37,955 - -0.7 38,001 - +0.0 38,068 - +1.0 38,068 - -0.4 38,260 + SO0033 0.21 +2.1 38,265 + SO0033 0.21 -0.0 38,273 - SO0033 0.22 +1.6 38,273 - SO0033 0.22 -0.6 38,273 - SO0033 0.22 +0.1 38,287 + SO0033 0.23 +0.2 38,287 + SO0033 0.23 -0.6 38,287 + SO0033 0.23 -0.2 38,295 - SO0033 0.24 +0.7 38,295 - SO0033 0.24 +0.1 38,295 - SO0033 0.24 -0.1 38,330 + SO0033 0.27 +0.5
Or see this region's nucleotide sequence