Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0891 and SO0892 are separated by 59 nucleotides SO0892 and SO_0893 overlap by 65 nucleotides SO_0893 and SO0894 are separated by 413 nucleotides
SO0891: SO0891 - ISSod1, transposase OrfA (NCBI ptt file), at 920,229 to 920,519
SO0891
SO0892: SO0892 - ISSod1, transposase OrfB (NCBI ptt file), at 920,579 to 921,388
SO0892
SO_0893: SO_0893 - no description, at 921,324 to 922,547
_0893
SO0894: SO0894 - hypothetical protein (NCBI ptt file), at 922,961 to 923,062
SO0894
Position (kb) 921
922
923 Strain fitness (log2 ratio) -2
-1
0
1 at 921.382 kb on + strand at 921.387 kb on + strand at 922.814 kb on - strand at 922.814 kb on - strand at 922.840 kb on - strand at 922.850 kb on - strand at 922.860 kb on - strand at 922.860 kb on - strand at 922.874 kb on + strand at 923.069 kb on + strand at 923.069 kb on + strand at 923.072 kb on - strand at 923.077 kb on - strand at 923.206 kb on - strand at 923.214 kb on - strand at 923.247 kb on + strand at 923.277 kb on + strand at 923.277 kb on + strand at 923.285 kb on - strand at 923.285 kb on - strand at 923.287 kb on + strand at 923.290 kb on + strand at 923.292 kb on + strand at 923.303 kb on - strand at 923.315 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 921,382 + +0.1 921,387 + -1.2 922,814 - +0.6 922,814 - -0.7 922,840 - -2.2 922,850 - +0.8 922,860 - +0.4 922,860 - +0.6 922,874 + +0.3 923,069 + -2.0 923,069 + -0.9 923,072 - -0.4 923,077 - -0.0 923,206 - +1.3 923,214 - -0.1 923,247 + -0.3 923,277 + +1.1 923,277 + -0.1 923,285 - +0.4 923,285 - +0.5 923,287 + -0.1 923,290 + -0.3 923,292 + -0.2 923,303 - +1.7 923,315 + +0.3
Or see this region's nucleotide sequence