Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13700

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13680 and PGA1_c13690 overlap by 1 nucleotidesPGA1_c13690 and PGA1_c13700 are separated by 33 nucleotidesPGA1_c13700 and PGA1_c13710 are separated by 3 nucleotides PGA1_c13680: PGA1_c13680 - Prolyl oligopeptidase family., at 1,411,990 to 1,412,940 _c13680 PGA1_c13690: PGA1_c13690 - 3-oxoacyl-[acyl-carrier-protein] synthase III, at 1,412,940 to 1,413,866 _c13690 PGA1_c13700: PGA1_c13700 - hypothetical protein, at 1,413,900 to 1,414,181 _c13700 PGA1_c13710: PGA1_c13710 - diaminopimelate decarboxylase-like protein, at 1,414,185 to 1,416,671 _c13710 Position (kb) 1413 1414 1415Strain fitness (log2 ratio) -2 -1 0 1at 1412.966 kb on + strandat 1412.980 kb on - strandat 1412.980 kb on - strandat 1413.022 kb on + strandat 1413.022 kb on + strandat 1413.022 kb on + strandat 1413.022 kb on + strandat 1413.030 kb on - strandat 1413.030 kb on - strandat 1413.030 kb on - strandat 1413.030 kb on - strandat 1413.084 kb on - strand, within PGA1_c13690at 1413.084 kb on - strand, within PGA1_c13690at 1413.084 kb on - strand, within PGA1_c13690at 1413.084 kb on - strand, within PGA1_c13690at 1413.086 kb on + strand, within PGA1_c13690at 1413.086 kb on + strand, within PGA1_c13690at 1413.099 kb on - strand, within PGA1_c13690at 1413.156 kb on + strand, within PGA1_c13690at 1413.178 kb on + strand, within PGA1_c13690at 1413.186 kb on - strand, within PGA1_c13690at 1413.186 kb on - strand, within PGA1_c13690at 1413.195 kb on + strand, within PGA1_c13690at 1413.203 kb on + strand, within PGA1_c13690at 1413.210 kb on + strand, within PGA1_c13690at 1413.258 kb on - strand, within PGA1_c13690at 1413.268 kb on - strand, within PGA1_c13690at 1413.271 kb on + strand, within PGA1_c13690at 1413.277 kb on + strand, within PGA1_c13690at 1413.278 kb on - strand, within PGA1_c13690at 1413.279 kb on - strand, within PGA1_c13690at 1413.291 kb on + strand, within PGA1_c13690at 1413.305 kb on + strand, within PGA1_c13690at 1413.348 kb on + strand, within PGA1_c13690at 1413.351 kb on - strand, within PGA1_c13690at 1413.406 kb on - strand, within PGA1_c13690at 1413.470 kb on + strand, within PGA1_c13690at 1413.472 kb on + strand, within PGA1_c13690at 1413.472 kb on + strand, within PGA1_c13690at 1413.473 kb on - strand, within PGA1_c13690at 1413.480 kb on - strand, within PGA1_c13690at 1413.480 kb on - strand, within PGA1_c13690at 1413.513 kb on + strand, within PGA1_c13690at 1413.529 kb on + strand, within PGA1_c13690at 1413.529 kb on + strand, within PGA1_c13690at 1413.529 kb on + strand, within PGA1_c13690at 1413.529 kb on + strand, within PGA1_c13690at 1413.537 kb on - strand, within PGA1_c13690at 1413.538 kb on + strand, within PGA1_c13690at 1413.539 kb on - strand, within PGA1_c13690at 1413.554 kb on + strand, within PGA1_c13690at 1413.573 kb on + strand, within PGA1_c13690at 1413.573 kb on + strand, within PGA1_c13690at 1413.573 kb on + strand, within PGA1_c13690at 1413.603 kb on - strand, within PGA1_c13690at 1413.609 kb on - strand, within PGA1_c13690at 1413.616 kb on + strand, within PGA1_c13690at 1413.659 kb on + strand, within PGA1_c13690at 1413.699 kb on - strand, within PGA1_c13690at 1413.705 kb on - strand, within PGA1_c13690at 1413.739 kb on - strand, within PGA1_c13690at 1413.765 kb on - strand, within PGA1_c13690at 1413.770 kb on + strand, within PGA1_c13690at 1413.851 kb on + strandat 1413.865 kb on - strandat 1413.890 kb on - strandat 1413.907 kb on - strandat 1413.948 kb on - strand, within PGA1_c13700at 1413.948 kb on - strand, within PGA1_c13700at 1413.959 kb on - strand, within PGA1_c13700at 1413.962 kb on + strand, within PGA1_c13700at 1414.026 kb on - strand, within PGA1_c13700at 1414.026 kb on - strand, within PGA1_c13700at 1414.053 kb on - strand, within PGA1_c13700at 1414.101 kb on + strand, within PGA1_c13700at 1414.101 kb on + strand, within PGA1_c13700at 1414.109 kb on - strand, within PGA1_c13700at 1414.126 kb on + strand, within PGA1_c13700at 1414.126 kb on + strand, within PGA1_c13700at 1414.133 kb on + strand, within PGA1_c13700at 1414.160 kb on - strandat 1414.174 kb on + strandat 1414.174 kb on + strandat 1414.259 kb on - strandat 1414.275 kb on + strandat 1414.283 kb on - strandat 1414.303 kb on + strandat 1414.342 kb on + strandat 1414.348 kb on + strandat 1414.350 kb on - strandat 1414.350 kb on - strandat 1414.355 kb on - strandat 1414.410 kb on + strandat 1414.449 kb on - strand, within PGA1_c13710at 1414.486 kb on + strand, within PGA1_c13710at 1414.491 kb on + strand, within PGA1_c13710at 1414.491 kb on + strand, within PGA1_c13710at 1414.491 kb on + strand, within PGA1_c13710at 1414.499 kb on - strand, within PGA1_c13710at 1414.560 kb on + strand, within PGA1_c13710at 1414.649 kb on - strand, within PGA1_c13710at 1414.660 kb on + strand, within PGA1_c13710at 1414.684 kb on + strand, within PGA1_c13710at 1414.712 kb on + strand, within PGA1_c13710at 1414.716 kb on - strand, within PGA1_c13710at 1414.753 kb on + strand, within PGA1_c13710at 1414.765 kb on + strand, within PGA1_c13710at 1414.765 kb on + strand, within PGA1_c13710at 1414.765 kb on + strand, within PGA1_c13710at 1414.765 kb on + strand, within PGA1_c13710at 1414.765 kb on + strand, within PGA1_c13710at 1414.773 kb on - strand, within PGA1_c13710at 1414.773 kb on - strand, within PGA1_c13710at 1414.797 kb on + strand, within PGA1_c13710at 1414.840 kb on + strand, within PGA1_c13710at 1414.848 kb on - strand, within PGA1_c13710at 1414.911 kb on + strand, within PGA1_c13710at 1414.927 kb on + strand, within PGA1_c13710at 1414.927 kb on + strand, within PGA1_c13710at 1414.953 kb on + strand, within PGA1_c13710at 1414.961 kb on - strand, within PGA1_c13710at 1414.961 kb on - strand, within PGA1_c13710at 1414.968 kb on - strand, within PGA1_c13710at 1415.006 kb on - strand, within PGA1_c13710at 1415.006 kb on - strand, within PGA1_c13710at 1415.009 kb on + strand, within PGA1_c13710at 1415.041 kb on + strand, within PGA1_c13710at 1415.041 kb on + strand, within PGA1_c13710at 1415.041 kb on + strand, within PGA1_c13710at 1415.044 kb on + strand, within PGA1_c13710at 1415.044 kb on + strand, within PGA1_c13710at 1415.044 kb on + strand, within PGA1_c13710at 1415.044 kb on + strand, within PGA1_c13710at 1415.044 kb on + strand, within PGA1_c13710at 1415.052 kb on - strand, within PGA1_c13710at 1415.052 kb on - strand, within PGA1_c13710at 1415.052 kb on - strand, within PGA1_c13710at 1415.052 kb on - strand, within PGA1_c13710at 1415.052 kb on - strand, within PGA1_c13710at 1415.052 kb on - strand, within PGA1_c13710at 1415.063 kb on + strand, within PGA1_c13710at 1415.124 kb on + strand, within PGA1_c13710

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,412,966 + -0.3
1,412,980 - +0.5
1,412,980 - +1.0
1,413,022 + -1.0
1,413,022 + -0.4
1,413,022 + -0.1
1,413,022 + +0.2
1,413,030 - +0.3
1,413,030 - +0.6
1,413,030 - +0.8
1,413,030 - +0.4
1,413,084 - PGA1_c13690 0.16 -2.0
1,413,084 - PGA1_c13690 0.16 -0.3
1,413,084 - PGA1_c13690 0.16 +0.1
1,413,084 - PGA1_c13690 0.16 +0.9
1,413,086 + PGA1_c13690 0.16 +0.5
1,413,086 + PGA1_c13690 0.16 +0.2
1,413,099 - PGA1_c13690 0.17 +0.7
1,413,156 + PGA1_c13690 0.23 +1.2
1,413,178 + PGA1_c13690 0.26 -0.0
1,413,186 - PGA1_c13690 0.27 +0.0
1,413,186 - PGA1_c13690 0.27 +0.8
1,413,195 + PGA1_c13690 0.28 +0.3
1,413,203 + PGA1_c13690 0.28 +0.4
1,413,210 + PGA1_c13690 0.29 -0.0
1,413,258 - PGA1_c13690 0.34 +0.4
1,413,268 - PGA1_c13690 0.35 +1.2
1,413,271 + PGA1_c13690 0.36 +0.4
1,413,277 + PGA1_c13690 0.36 +0.8
1,413,278 - PGA1_c13690 0.36 +0.9
1,413,279 - PGA1_c13690 0.37 +0.4
1,413,291 + PGA1_c13690 0.38 +1.1
1,413,305 + PGA1_c13690 0.39 +1.1
1,413,348 + PGA1_c13690 0.44 -0.5
1,413,351 - PGA1_c13690 0.44 -1.6
1,413,406 - PGA1_c13690 0.50 +1.1
1,413,470 + PGA1_c13690 0.57 +0.4
1,413,472 + PGA1_c13690 0.57 +1.0
1,413,472 + PGA1_c13690 0.57 +1.3
1,413,473 - PGA1_c13690 0.57 +0.0
1,413,480 - PGA1_c13690 0.58 +1.6
1,413,480 - PGA1_c13690 0.58 +0.6
1,413,513 + PGA1_c13690 0.62 -0.6
1,413,529 + PGA1_c13690 0.64 -0.3
1,413,529 + PGA1_c13690 0.64 +0.1
1,413,529 + PGA1_c13690 0.64 +0.2
1,413,529 + PGA1_c13690 0.64 +0.6
1,413,537 - PGA1_c13690 0.64 +1.5
1,413,538 + PGA1_c13690 0.65 -0.4
1,413,539 - PGA1_c13690 0.65 +1.1
1,413,554 + PGA1_c13690 0.66 -0.3
1,413,573 + PGA1_c13690 0.68 -1.1
1,413,573 + PGA1_c13690 0.68 +0.6
1,413,573 + PGA1_c13690 0.68 +0.3
1,413,603 - PGA1_c13690 0.72 +0.9
1,413,609 - PGA1_c13690 0.72 +0.5
1,413,616 + PGA1_c13690 0.73 +0.9
1,413,659 + PGA1_c13690 0.78 -1.3
1,413,699 - PGA1_c13690 0.82 +0.9
1,413,705 - PGA1_c13690 0.83 +1.3
1,413,739 - PGA1_c13690 0.86 -0.0
1,413,765 - PGA1_c13690 0.89 +0.8
1,413,770 + PGA1_c13690 0.90 -0.7
1,413,851 + +0.3
1,413,865 - +0.2
1,413,890 - +0.9
1,413,907 - -0.4
1,413,948 - PGA1_c13700 0.17 -0.4
1,413,948 - PGA1_c13700 0.17 +1.2
1,413,959 - PGA1_c13700 0.21 +0.7
1,413,962 + PGA1_c13700 0.22 +0.6
1,414,026 - PGA1_c13700 0.45 -0.8
1,414,026 - PGA1_c13700 0.45 +0.2
1,414,053 - PGA1_c13700 0.54 +1.0
1,414,101 + PGA1_c13700 0.71 +0.4
1,414,101 + PGA1_c13700 0.71 -0.1
1,414,109 - PGA1_c13700 0.74 +0.3
1,414,126 + PGA1_c13700 0.80 -0.2
1,414,126 + PGA1_c13700 0.80 +0.3
1,414,133 + PGA1_c13700 0.83 +0.2
1,414,160 - -0.1
1,414,174 + +0.1
1,414,174 + +0.4
1,414,259 - +0.7
1,414,275 + +0.1
1,414,283 - +0.1
1,414,303 + +0.2
1,414,342 + +0.2
1,414,348 + +1.2
1,414,350 - -0.3
1,414,350 - +0.6
1,414,355 - -1.6
1,414,410 + -0.0
1,414,449 - PGA1_c13710 0.11 -0.2
1,414,486 + PGA1_c13710 0.12 -0.6
1,414,491 + PGA1_c13710 0.12 +0.2
1,414,491 + PGA1_c13710 0.12 +0.5
1,414,491 + PGA1_c13710 0.12 +0.7
1,414,499 - PGA1_c13710 0.13 -0.9
1,414,560 + PGA1_c13710 0.15 -0.6
1,414,649 - PGA1_c13710 0.19 -0.5
1,414,660 + PGA1_c13710 0.19 -0.5
1,414,684 + PGA1_c13710 0.20 -0.8
1,414,712 + PGA1_c13710 0.21 +0.4
1,414,716 - PGA1_c13710 0.21 +0.5
1,414,753 + PGA1_c13710 0.23 +0.2
1,414,765 + PGA1_c13710 0.23 +0.2
1,414,765 + PGA1_c13710 0.23 +0.1
1,414,765 + PGA1_c13710 0.23 +0.4
1,414,765 + PGA1_c13710 0.23 +0.0
1,414,765 + PGA1_c13710 0.23 +1.1
1,414,773 - PGA1_c13710 0.24 +0.2
1,414,773 - PGA1_c13710 0.24 -0.0
1,414,797 + PGA1_c13710 0.25 +0.4
1,414,840 + PGA1_c13710 0.26 +0.1
1,414,848 - PGA1_c13710 0.27 -2.1
1,414,911 + PGA1_c13710 0.29 +0.6
1,414,927 + PGA1_c13710 0.30 -0.0
1,414,927 + PGA1_c13710 0.30 +0.1
1,414,953 + PGA1_c13710 0.31 -0.5
1,414,961 - PGA1_c13710 0.31 +0.1
1,414,961 - PGA1_c13710 0.31 -0.2
1,414,968 - PGA1_c13710 0.31 -0.3
1,415,006 - PGA1_c13710 0.33 +0.5
1,415,006 - PGA1_c13710 0.33 +0.4
1,415,009 + PGA1_c13710 0.33 -0.3
1,415,041 + PGA1_c13710 0.34 +0.8
1,415,041 + PGA1_c13710 0.34 +1.1
1,415,041 + PGA1_c13710 0.34 +0.3
1,415,044 + PGA1_c13710 0.35 -0.2
1,415,044 + PGA1_c13710 0.35 +0.3
1,415,044 + PGA1_c13710 0.35 -0.5
1,415,044 + PGA1_c13710 0.35 -0.2
1,415,044 + PGA1_c13710 0.35 +0.5
1,415,052 - PGA1_c13710 0.35 -0.4
1,415,052 - PGA1_c13710 0.35 +0.4
1,415,052 - PGA1_c13710 0.35 +0.8
1,415,052 - PGA1_c13710 0.35 +0.2
1,415,052 - PGA1_c13710 0.35 -0.1
1,415,052 - PGA1_c13710 0.35 -0.0
1,415,063 + PGA1_c13710 0.35 +0.7
1,415,124 + PGA1_c13710 0.38 -1.7

Or see this region's nucleotide sequence