Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0321 and SO0322 are separated by 99 nucleotides SO0322 and SO0323 are separated by 138 nucleotides SO0323 and SO0324 are separated by 54 nucleotides SO0324 and SO0325 are separated by 104 nucleotides
SO0321: SO0321 - hypothetical protein (NCBI ptt file), at 327,699 to 328,301
SO0321
SO0322: SO0322 - hypothetical protein (NCBI ptt file), at 328,401 to 328,982
SO0322
SO0323: SO0323 - hypothetical protein (NCBI ptt file), at 329,121 to 330,053
SO0323
SO0324: SO0324 - conserved hypothetical protein (NCBI ptt file), at 330,108 to 330,509
SO0324
SO0325: SO0325 - dsrE-related protein (NCBI ptt file), at 330,614 to 330,973
SO0325
Position (kb) 329
330
331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 328.157 kb on - strand, within SO0321 at 328.212 kb on + strand, within SO0321 at 328.268 kb on + strand at 328.308 kb on - strand at 328.474 kb on + strand, within SO0322 at 328.505 kb on - strand, within SO0322 at 328.530 kb on + strand, within SO0322 at 328.538 kb on - strand, within SO0322 at 328.538 kb on - strand, within SO0322 at 328.540 kb on + strand, within SO0322 at 328.598 kb on + strand, within SO0322 at 328.643 kb on - strand at 328.661 kb on + strand, within SO0322 at 328.686 kb on + strand, within SO0322 at 328.689 kb on - strand, within SO0322 at 328.689 kb on - strand, within SO0322 at 328.694 kb on - strand, within SO0322 at 328.743 kb on + strand, within SO0322 at 328.743 kb on + strand, within SO0322 at 328.751 kb on - strand, within SO0322 at 328.753 kb on + strand, within SO0322 at 328.894 kb on + strand, within SO0322 at 328.894 kb on + strand, within SO0322 at 328.945 kb on - strand at 328.947 kb on + strand at 328.965 kb on + strand at 328.965 kb on - strand at 329.013 kb on + strand at 329.018 kb on + strand at 329.018 kb on + strand at 329.026 kb on - strand at 329.026 kb on - strand at 329.041 kb on + strand at 329.041 kb on + strand at 329.041 kb on + strand at 329.041 kb on + strand at 329.041 kb on + strand at 329.049 kb on - strand at 329.049 kb on - strand at 329.049 kb on - strand at 329.049 kb on - strand at 329.059 kb on - strand at 329.207 kb on + strand at 329.207 kb on + strand at 329.215 kb on - strand, within SO0323 at 329.242 kb on + strand, within SO0323 at 329.242 kb on + strand, within SO0323 at 329.297 kb on + strand, within SO0323 at 329.297 kb on + strand, within SO0323 at 329.297 kb on + strand, within SO0323 at 329.305 kb on - strand, within SO0323 at 329.348 kb on - strand, within SO0323 at 329.357 kb on - strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.477 kb on + strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.485 kb on - strand, within SO0323 at 329.486 kb on - strand, within SO0323 at 329.569 kb on + strand, within SO0323 at 329.694 kb on + strand, within SO0323 at 329.702 kb on - strand, within SO0323 at 329.702 kb on - strand, within SO0323 at 329.718 kb on + strand, within SO0323 at 329.726 kb on - strand, within SO0323 at 329.764 kb on - strand, within SO0323 at 329.768 kb on + strand, within SO0323 at 329.768 kb on + strand, within SO0323 at 329.791 kb on + strand, within SO0323 at 329.796 kb on + strand, within SO0323 at 329.930 kb on + strand, within SO0323 at 329.951 kb on + strand, within SO0323 at 329.991 kb on - strand at 330.201 kb on + strand, within SO0324 at 330.237 kb on + strand, within SO0324 at 330.302 kb on - strand, within SO0324 at 330.393 kb on + strand, within SO0324 at 330.452 kb on + strand, within SO0324 at 330.487 kb on - strand at 330.492 kb on - strand at 330.524 kb on - strand at 330.556 kb on + strand at 330.556 kb on + strand at 330.556 kb on + strand at 330.643 kb on - strand at 330.652 kb on + strand, within SO0325 at 330.694 kb on + strand, within SO0325 at 330.694 kb on + strand, within SO0325 at 330.707 kb on + strand, within SO0325 at 330.712 kb on - strand, within SO0325 at 330.900 kb on - strand, within SO0325 at 330.912 kb on + strand, within SO0325 at 330.947 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 328,157 - SO0321 0.76 -0.7 328,212 + SO0321 0.85 +1.6 328,268 + -1.0 328,308 - +0.5 328,474 + SO0322 0.13 -1.1 328,505 - SO0322 0.18 +0.8 328,530 + SO0322 0.22 +0.4 328,538 - SO0322 0.24 -1.0 328,538 - SO0322 0.24 -0.5 328,540 + SO0322 0.24 -1.9 328,598 + SO0322 0.34 -0.0 328,643 - +2.8 328,661 + SO0322 0.45 -1.0 328,686 + SO0322 0.49 -0.1 328,689 - SO0322 0.49 +0.9 328,689 - SO0322 0.49 -0.2 328,694 - SO0322 0.50 +2.9 328,743 + SO0322 0.59 +1.9 328,743 + SO0322 0.59 -0.9 328,751 - SO0322 0.60 -0.2 328,753 + SO0322 0.60 +0.2 328,894 + SO0322 0.85 -0.6 328,894 + SO0322 0.85 +0.6 328,945 - +0.4 328,947 + -0.1 328,965 + -0.7 328,965 - -1.0 329,013 + +0.4 329,018 + +0.7 329,018 + +1.1 329,026 - +0.8 329,026 - -1.5 329,041 + -0.3 329,041 + +2.0 329,041 + +0.6 329,041 + -0.0 329,041 + -0.2 329,049 - +0.5 329,049 - +0.0 329,049 - +0.9 329,049 - +0.6 329,059 - +2.1 329,207 + +0.5 329,207 + +0.0 329,215 - SO0323 0.10 -0.8 329,242 + SO0323 0.13 -0.2 329,242 + SO0323 0.13 +1.4 329,297 + SO0323 0.19 +0.0 329,297 + SO0323 0.19 -0.5 329,297 + SO0323 0.19 -1.7 329,305 - SO0323 0.20 -0.1 329,348 - SO0323 0.24 -1.2 329,357 - SO0323 0.25 -1.0 329,477 + SO0323 0.38 -2.0 329,477 + SO0323 0.38 -1.8 329,477 + SO0323 0.38 -0.6 329,477 + SO0323 0.38 -0.4 329,477 + SO0323 0.38 +0.9 329,477 + SO0323 0.38 +0.0 329,485 - SO0323 0.39 -1.0 329,485 - SO0323 0.39 -0.3 329,485 - SO0323 0.39 -0.1 329,485 - SO0323 0.39 -0.4 329,485 - SO0323 0.39 +0.1 329,485 - SO0323 0.39 -0.1 329,486 - SO0323 0.39 -0.6 329,569 + SO0323 0.48 -3.3 329,694 + SO0323 0.61 +0.4 329,702 - SO0323 0.62 -1.8 329,702 - SO0323 0.62 -0.2 329,718 + SO0323 0.64 -0.1 329,726 - SO0323 0.65 -2.3 329,764 - SO0323 0.69 +1.0 329,768 + SO0323 0.69 -0.1 329,768 + SO0323 0.69 -1.6 329,791 + SO0323 0.72 -2.3 329,796 + SO0323 0.72 -0.1 329,930 + SO0323 0.87 -1.6 329,951 + SO0323 0.89 +0.6 329,991 - +0.1 330,201 + SO0324 0.23 +1.0 330,237 + SO0324 0.32 -1.5 330,302 - SO0324 0.48 -1.3 330,393 + SO0324 0.71 +1.2 330,452 + SO0324 0.86 +1.0 330,487 - +0.1 330,492 - +0.4 330,524 - +0.0 330,556 + -0.6 330,556 + -2.4 330,556 + -0.1 330,643 - -0.7 330,652 + SO0325 0.11 -0.5 330,694 + SO0325 0.22 -1.8 330,694 + SO0325 0.22 -1.9 330,707 + SO0325 0.26 -0.4 330,712 - SO0325 0.27 -0.4 330,900 - SO0325 0.79 +0.2 330,912 + SO0325 0.83 -0.3 330,947 - -1.1
Or see this region's nucleotide sequence