Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07480 and PGA1_c07490 overlap by 1 nucleotides PGA1_c07490 and PGA1_c07500 are separated by 98 nucleotides PGA1_c07500 and PGA1_c07510 are separated by 41 nucleotides PGA1_c07510 and PGA1_c07520 are separated by 31 nucleotides PGA1_c07520 and PGA1_c07530 are separated by 64 nucleotides
PGA1_c07480: PGA1_c07480 - Lysophospholipase, at 772,837 to 773,799
_c07480
PGA1_c07490: PGA1_c07490 - Putative sterol carrier protein, at 773,799 to 774,086
_c07490
PGA1_c07500: PGA1_c07500 - hypothetical protein, at 774,185 to 774,754
_c07500
PGA1_c07510: PGA1_c07510 - DNA/RNA helicase-like protein, at 774,796 to 777,813
_c07510
PGA1_c07520: PGA1_c07520 - putative heat shock protein, at 777,845 to 778,210
_c07520
PGA1_c07530: PGA1_c07530 - ferredoxin FdxA, at 778,275 to 778,613
_c07530
Position (kb) 774
775
776
777
778 Strain fitness (log2 ratio) -2
-1
0
1
2 at 773.797 kb on + strand at 773.805 kb on - strand at 773.817 kb on - strand at 773.913 kb on + strand, within PGA1_c07490 at 774.002 kb on - strand, within PGA1_c07490 at 774.069 kb on + strand at 774.086 kb on + strand at 774.107 kb on - strand at 774.166 kb on + strand at 774.172 kb on + strand at 774.172 kb on + strand at 774.174 kb on - strand at 774.180 kb on - strand at 774.180 kb on - strand at 774.180 kb on - strand at 774.180 kb on - strand at 774.213 kb on - strand at 774.229 kb on + strand at 774.229 kb on + strand at 774.237 kb on - strand at 774.247 kb on - strand, within PGA1_c07500 at 774.247 kb on - strand, within PGA1_c07500 at 774.310 kb on + strand, within PGA1_c07500 at 774.310 kb on + strand, within PGA1_c07500 at 774.310 kb on + strand, within PGA1_c07500 at 774.311 kb on + strand, within PGA1_c07500 at 774.318 kb on - strand, within PGA1_c07500 at 774.318 kb on - strand, within PGA1_c07500 at 774.338 kb on + strand, within PGA1_c07500 at 774.338 kb on + strand, within PGA1_c07500 at 774.341 kb on - strand, within PGA1_c07500 at 774.343 kb on + strand, within PGA1_c07500 at 774.356 kb on - strand, within PGA1_c07500 at 774.356 kb on - strand, within PGA1_c07500 at 774.362 kb on + strand, within PGA1_c07500 at 774.370 kb on - strand, within PGA1_c07500 at 774.373 kb on + strand, within PGA1_c07500 at 774.420 kb on + strand, within PGA1_c07500 at 774.462 kb on - strand, within PGA1_c07500 at 774.502 kb on + strand, within PGA1_c07500 at 774.502 kb on + strand, within PGA1_c07500 at 774.577 kb on + strand, within PGA1_c07500 at 774.585 kb on - strand, within PGA1_c07500 at 774.631 kb on + strand, within PGA1_c07500 at 774.631 kb on + strand, within PGA1_c07500 at 774.639 kb on - strand, within PGA1_c07500 at 774.661 kb on - strand, within PGA1_c07500 at 774.669 kb on - strand, within PGA1_c07500 at 774.676 kb on + strand, within PGA1_c07500 at 774.684 kb on - strand, within PGA1_c07500 at 774.727 kb on + strand at 774.742 kb on - strand at 774.742 kb on - strand at 774.749 kb on + strand at 774.781 kb on - strand at 774.828 kb on + strand at 774.831 kb on - strand at 774.837 kb on - strand at 774.849 kb on + strand at 774.897 kb on + strand at 774.956 kb on - strand at 774.979 kb on - strand at 775.020 kb on - strand at 775.037 kb on - strand at 775.045 kb on + strand at 775.045 kb on + strand at 775.064 kb on - strand at 775.098 kb on - strand, within PGA1_c07510 at 775.114 kb on - strand, within PGA1_c07510 at 775.114 kb on - strand, within PGA1_c07510 at 775.114 kb on - strand, within PGA1_c07510 at 775.119 kb on - strand, within PGA1_c07510 at 775.146 kb on + strand, within PGA1_c07510 at 775.218 kb on + strand, within PGA1_c07510 at 775.226 kb on - strand, within PGA1_c07510 at 775.226 kb on - strand, within PGA1_c07510 at 775.254 kb on + strand, within PGA1_c07510 at 775.258 kb on + strand, within PGA1_c07510 at 775.271 kb on - strand, within PGA1_c07510 at 775.282 kb on - strand, within PGA1_c07510 at 775.346 kb on + strand, within PGA1_c07510 at 775.386 kb on + strand, within PGA1_c07510 at 775.386 kb on + strand, within PGA1_c07510 at 775.386 kb on + strand, within PGA1_c07510 at 775.394 kb on - strand, within PGA1_c07510 at 775.433 kb on - strand, within PGA1_c07510 at 775.457 kb on + strand, within PGA1_c07510 at 775.499 kb on + strand, within PGA1_c07510 at 775.513 kb on + strand, within PGA1_c07510 at 775.527 kb on + strand, within PGA1_c07510 at 775.627 kb on - strand, within PGA1_c07510 at 775.670 kb on + strand, within PGA1_c07510 at 775.718 kb on + strand, within PGA1_c07510 at 775.741 kb on + strand, within PGA1_c07510 at 775.875 kb on - strand, within PGA1_c07510 at 775.875 kb on - strand, within PGA1_c07510 at 775.875 kb on - strand, within PGA1_c07510 at 775.890 kb on + strand, within PGA1_c07510 at 775.890 kb on + strand, within PGA1_c07510 at 775.890 kb on + strand, within PGA1_c07510 at 775.898 kb on - strand, within PGA1_c07510 at 775.933 kb on - strand, within PGA1_c07510 at 775.982 kb on + strand, within PGA1_c07510 at 775.982 kb on + strand, within PGA1_c07510 at 775.982 kb on + strand, within PGA1_c07510 at 775.982 kb on + strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 776.031 kb on + strand, within PGA1_c07510 at 776.048 kb on + strand, within PGA1_c07510 at 776.061 kb on + strand, within PGA1_c07510 at 776.069 kb on - strand, within PGA1_c07510 at 776.076 kb on - strand, within PGA1_c07510 at 776.090 kb on + strand, within PGA1_c07510 at 776.096 kb on + strand, within PGA1_c07510 at 776.101 kb on + strand, within PGA1_c07510 at 776.156 kb on - strand, within PGA1_c07510 at 776.158 kb on + strand, within PGA1_c07510 at 776.158 kb on + strand, within PGA1_c07510 at 776.158 kb on + strand, within PGA1_c07510 at 776.166 kb on - strand, within PGA1_c07510 at 776.172 kb on + strand, within PGA1_c07510 at 776.180 kb on - strand, within PGA1_c07510 at 776.188 kb on - strand, within PGA1_c07510 at 776.190 kb on + strand, within PGA1_c07510 at 776.191 kb on + strand, within PGA1_c07510 at 776.225 kb on - strand, within PGA1_c07510 at 776.258 kb on - strand, within PGA1_c07510 at 776.268 kb on - strand, within PGA1_c07510 at 776.290 kb on - strand, within PGA1_c07510 at 776.291 kb on - strand, within PGA1_c07510 at 776.292 kb on - strand, within PGA1_c07510 at 776.292 kb on - strand, within PGA1_c07510 at 776.336 kb on - strand, within PGA1_c07510 at 776.391 kb on + strand, within PGA1_c07510 at 776.399 kb on - strand, within PGA1_c07510 at 776.418 kb on + strand, within PGA1_c07510 at 776.470 kb on + strand, within PGA1_c07510 at 776.484 kb on + strand, within PGA1_c07510 at 776.484 kb on + strand, within PGA1_c07510 at 776.492 kb on - strand, within PGA1_c07510 at 776.492 kb on - strand, within PGA1_c07510 at 776.492 kb on - strand, within PGA1_c07510 at 776.492 kb on - strand, within PGA1_c07510 at 776.522 kb on + strand, within PGA1_c07510 at 776.522 kb on + strand, within PGA1_c07510 at 776.522 kb on + strand, within PGA1_c07510 at 776.527 kb on + strand, within PGA1_c07510 at 776.652 kb on + strand, within PGA1_c07510 at 776.687 kb on - strand, within PGA1_c07510 at 776.691 kb on - strand, within PGA1_c07510 at 776.691 kb on - strand, within PGA1_c07510 at 776.698 kb on - strand, within PGA1_c07510 at 776.728 kb on - strand, within PGA1_c07510 at 776.810 kb on + strand, within PGA1_c07510 at 776.862 kb on - strand, within PGA1_c07510 at 776.896 kb on + strand, within PGA1_c07510 at 777.007 kb on + strand, within PGA1_c07510 at 777.007 kb on + strand, within PGA1_c07510 at 777.153 kb on - strand, within PGA1_c07510 at 777.267 kb on + strand, within PGA1_c07510 at 777.270 kb on - strand, within PGA1_c07510 at 777.304 kb on + strand, within PGA1_c07510 at 777.310 kb on - strand, within PGA1_c07510 at 777.521 kb on - strand at 777.528 kb on - strand at 777.544 kb on - strand at 777.608 kb on - strand at 777.714 kb on - strand at 777.717 kb on - strand at 777.720 kb on + strand at 777.720 kb on + strand at 777.768 kb on - strand at 777.792 kb on - strand at 777.796 kb on - strand at 777.900 kb on + strand, within PGA1_c07520 at 777.900 kb on + strand, within PGA1_c07520 at 777.900 kb on - strand, within PGA1_c07520 at 777.922 kb on + strand, within PGA1_c07520 at 777.930 kb on - strand, within PGA1_c07520 at 778.057 kb on + strand, within PGA1_c07520 at 778.060 kb on - strand, within PGA1_c07520 at 778.150 kb on - strand, within PGA1_c07520 at 778.184 kb on - strand at 778.633 kb on - strand at 778.650 kb on - strand at 778.738 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 773,797 + +1.0 773,805 - -0.3 773,817 - -1.2 773,913 + PGA1_c07490 0.40 -0.5 774,002 - PGA1_c07490 0.70 -0.5 774,069 + -1.1 774,086 + +0.1 774,107 - -1.0 774,166 + +0.6 774,172 + +1.2 774,172 + +0.8 774,174 - +0.8 774,180 - +0.4 774,180 - +0.3 774,180 - +0.2 774,180 - -0.0 774,213 - -0.3 774,229 + -0.4 774,229 + +0.6 774,237 - +0.5 774,247 - PGA1_c07500 0.11 -0.6 774,247 - PGA1_c07500 0.11 -0.9 774,310 + PGA1_c07500 0.22 +0.3 774,310 + PGA1_c07500 0.22 +0.2 774,310 + PGA1_c07500 0.22 +0.4 774,311 + PGA1_c07500 0.22 -2.2 774,318 - PGA1_c07500 0.23 +0.3 774,318 - PGA1_c07500 0.23 +0.6 774,338 + PGA1_c07500 0.27 -0.0 774,338 + PGA1_c07500 0.27 +0.3 774,341 - PGA1_c07500 0.27 +0.1 774,343 + PGA1_c07500 0.28 +0.0 774,356 - PGA1_c07500 0.30 -1.1 774,356 - PGA1_c07500 0.30 -0.0 774,362 + PGA1_c07500 0.31 +0.4 774,370 - PGA1_c07500 0.32 +0.6 774,373 + PGA1_c07500 0.33 -0.5 774,420 + PGA1_c07500 0.41 -0.4 774,462 - PGA1_c07500 0.49 -0.4 774,502 + PGA1_c07500 0.56 -0.7 774,502 + PGA1_c07500 0.56 +0.8 774,577 + PGA1_c07500 0.69 +1.3 774,585 - PGA1_c07500 0.70 -0.2 774,631 + PGA1_c07500 0.78 -1.0 774,631 + PGA1_c07500 0.78 -0.1 774,639 - PGA1_c07500 0.80 -0.9 774,661 - PGA1_c07500 0.84 -0.0 774,669 - PGA1_c07500 0.85 +0.6 774,676 + PGA1_c07500 0.86 +0.6 774,684 - PGA1_c07500 0.88 -0.1 774,727 + -0.0 774,742 - -1.5 774,742 - +0.9 774,749 + +1.8 774,781 - -0.0 774,828 + -0.5 774,831 - +1.1 774,837 - -0.5 774,849 + -1.0 774,897 + +0.8 774,956 - +0.9 774,979 - +0.3 775,020 - +0.6 775,037 - -0.8 775,045 + +0.7 775,045 + -1.5 775,064 - -0.3 775,098 - PGA1_c07510 0.10 +0.5 775,114 - PGA1_c07510 0.11 +0.3 775,114 - PGA1_c07510 0.11 -0.2 775,114 - PGA1_c07510 0.11 +0.2 775,119 - PGA1_c07510 0.11 -0.4 775,146 + PGA1_c07510 0.12 +1.6 775,218 + PGA1_c07510 0.14 +0.3 775,226 - PGA1_c07510 0.14 +1.1 775,226 - PGA1_c07510 0.14 -0.2 775,254 + PGA1_c07510 0.15 +0.8 775,258 + PGA1_c07510 0.15 +0.7 775,271 - PGA1_c07510 0.16 +0.8 775,282 - PGA1_c07510 0.16 -0.8 775,346 + PGA1_c07510 0.18 -2.1 775,386 + PGA1_c07510 0.20 -0.6 775,386 + PGA1_c07510 0.20 +0.5 775,386 + PGA1_c07510 0.20 +1.6 775,394 - PGA1_c07510 0.20 -0.7 775,433 - PGA1_c07510 0.21 -0.0 775,457 + PGA1_c07510 0.22 -0.4 775,499 + PGA1_c07510 0.23 -0.3 775,513 + PGA1_c07510 0.24 -1.4 775,527 + PGA1_c07510 0.24 +0.0 775,627 - PGA1_c07510 0.28 +0.9 775,670 + PGA1_c07510 0.29 -1.9 775,718 + PGA1_c07510 0.31 -0.8 775,741 + PGA1_c07510 0.31 +1.4 775,875 - PGA1_c07510 0.36 +1.1 775,875 - PGA1_c07510 0.36 +0.7 775,875 - PGA1_c07510 0.36 +0.1 775,890 + PGA1_c07510 0.36 +0.9 775,890 + PGA1_c07510 0.36 +0.0 775,890 + PGA1_c07510 0.36 -0.7 775,898 - PGA1_c07510 0.37 -0.1 775,933 - PGA1_c07510 0.38 +0.3 775,982 + PGA1_c07510 0.39 +0.5 775,982 + PGA1_c07510 0.39 +0.2 775,982 + PGA1_c07510 0.39 -0.6 775,982 + PGA1_c07510 0.39 +0.4 775,990 - PGA1_c07510 0.40 +0.7 775,990 - PGA1_c07510 0.40 -2.7 775,990 - PGA1_c07510 0.40 -0.2 775,990 - PGA1_c07510 0.40 +0.1 775,990 - PGA1_c07510 0.40 +0.6 775,990 - PGA1_c07510 0.40 +0.1 776,031 + PGA1_c07510 0.41 +1.2 776,048 + PGA1_c07510 0.41 -1.4 776,061 + PGA1_c07510 0.42 +0.4 776,069 - PGA1_c07510 0.42 +1.1 776,076 - PGA1_c07510 0.42 +0.2 776,090 + PGA1_c07510 0.43 -0.1 776,096 + PGA1_c07510 0.43 +0.2 776,101 + PGA1_c07510 0.43 +0.9 776,156 - PGA1_c07510 0.45 +0.8 776,158 + PGA1_c07510 0.45 -0.4 776,158 + PGA1_c07510 0.45 +1.0 776,158 + PGA1_c07510 0.45 +1.5 776,166 - PGA1_c07510 0.45 -0.4 776,172 + PGA1_c07510 0.46 +0.9 776,180 - PGA1_c07510 0.46 +0.5 776,188 - PGA1_c07510 0.46 +2.0 776,190 + PGA1_c07510 0.46 +0.8 776,191 + PGA1_c07510 0.46 +0.2 776,225 - PGA1_c07510 0.47 +1.0 776,258 - PGA1_c07510 0.48 +1.4 776,268 - PGA1_c07510 0.49 +0.6 776,290 - PGA1_c07510 0.50 +1.0 776,291 - PGA1_c07510 0.50 +2.3 776,292 - PGA1_c07510 0.50 +0.6 776,292 - PGA1_c07510 0.50 +1.0 776,336 - PGA1_c07510 0.51 +2.0 776,391 + PGA1_c07510 0.53 +1.1 776,399 - PGA1_c07510 0.53 +0.3 776,418 + PGA1_c07510 0.54 +1.8 776,470 + PGA1_c07510 0.55 +0.9 776,484 + PGA1_c07510 0.56 +1.0 776,484 + PGA1_c07510 0.56 +0.9 776,492 - PGA1_c07510 0.56 +0.5 776,492 - PGA1_c07510 0.56 +2.4 776,492 - PGA1_c07510 0.56 +1.3 776,492 - PGA1_c07510 0.56 +1.4 776,522 + PGA1_c07510 0.57 +1.6 776,522 + PGA1_c07510 0.57 +0.6 776,522 + PGA1_c07510 0.57 +1.5 776,527 + PGA1_c07510 0.57 +0.3 776,652 + PGA1_c07510 0.61 +0.1 776,687 - PGA1_c07510 0.63 +0.9 776,691 - PGA1_c07510 0.63 +0.8 776,691 - PGA1_c07510 0.63 +0.5 776,698 - PGA1_c07510 0.63 +1.3 776,728 - PGA1_c07510 0.64 +0.8 776,810 + PGA1_c07510 0.67 +0.9 776,862 - PGA1_c07510 0.68 +1.0 776,896 + PGA1_c07510 0.70 +1.5 777,007 + PGA1_c07510 0.73 +1.0 777,007 + PGA1_c07510 0.73 +1.9 777,153 - PGA1_c07510 0.78 +2.0 777,267 + PGA1_c07510 0.82 +0.7 777,270 - PGA1_c07510 0.82 +0.9 777,304 + PGA1_c07510 0.83 +1.3 777,310 - PGA1_c07510 0.83 +1.5 777,521 - -0.0 777,528 - +0.2 777,544 - +1.2 777,608 - +2.5 777,714 - +2.0 777,717 - +1.8 777,720 + +2.0 777,720 + +0.0 777,768 - +1.8 777,792 - +1.9 777,796 - +2.0 777,900 + PGA1_c07520 0.15 +0.1 777,900 + PGA1_c07520 0.15 -0.1 777,900 - PGA1_c07520 0.15 +1.4 777,922 + PGA1_c07520 0.21 +0.9 777,930 - PGA1_c07520 0.23 -0.3 778,057 + PGA1_c07520 0.58 -0.8 778,060 - PGA1_c07520 0.59 +1.6 778,150 - PGA1_c07520 0.83 -0.7 778,184 - -0.5 778,633 - +0.5 778,650 - -0.5 778,738 + -0.3
Or see this region's nucleotide sequence