Experiment: LB 26C sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0747 and Psest_0748 are separated by 9 nucleotides Psest_0748 and Psest_0749 are separated by 359 nucleotides Psest_0749 and Psest_0750 are separated by 108 nucleotides Psest_0750 and Psest_0751 are separated by 22 nucleotides
Psest_0747: Psest_0747 - Putative GTPases (G3E family), at 818,960 to 820,162
_0747
Psest_0748: Psest_0748 - RNA polymerase-binding protein DksA, at 820,172 to 820,576
_0748
Psest_0749: Psest_0749 - Transcriptional regulator, at 820,936 to 821,646
_0749
Psest_0750: Psest_0750 - hypothetical protein, at 821,755 to 822,129
_0750
Psest_0751: Psest_0751 - Arabinose efflux permease, at 822,152 to 823,333
_0751
Position (kb) 820
821
822 Strain fitness (log2 ratio) -2
-1
0
1
2 at 820.536 kb on + strand at 820.536 kb on + strand at 820.536 kb on + strand at 820.537 kb on - strand at 820.537 kb on - strand at 820.537 kb on - strand at 820.537 kb on - strand at 820.558 kb on + strand at 820.629 kb on + strand at 820.629 kb on + strand at 820.629 kb on + strand at 820.630 kb on - strand at 820.630 kb on - strand at 820.630 kb on - strand at 820.630 kb on - strand at 820.780 kb on + strand at 820.900 kb on - strand at 820.905 kb on - strand at 821.049 kb on + strand, within Psest_0749 at 821.050 kb on - strand, within Psest_0749 at 821.176 kb on + strand, within Psest_0749 at 821.177 kb on - strand, within Psest_0749 at 821.177 kb on - strand, within Psest_0749 at 821.177 kb on - strand, within Psest_0749 at 821.180 kb on - strand, within Psest_0749 at 821.180 kb on - strand, within Psest_0749 at 821.180 kb on - strand, within Psest_0749 at 821.180 kb on - strand, within Psest_0749 at 821.180 kb on - strand, within Psest_0749 at 821.203 kb on + strand, within Psest_0749 at 821.203 kb on + strand, within Psest_0749 at 821.203 kb on + strand, within Psest_0749 at 821.203 kb on + strand, within Psest_0749 at 821.204 kb on - strand, within Psest_0749 at 821.296 kb on + strand, within Psest_0749 at 821.525 kb on - strand, within Psest_0749 at 821.700 kb on - strand at 821.755 kb on - strand at 821.784 kb on + strand at 821.784 kb on + strand at 821.784 kb on + strand at 821.784 kb on + strand at 821.785 kb on - strand at 821.812 kb on + strand, within Psest_0750 at 821.812 kb on + strand, within Psest_0750 at 821.812 kb on + strand, within Psest_0750 at 821.812 kb on + strand, within Psest_0750 at 821.812 kb on + strand, within Psest_0750 at 821.813 kb on - strand, within Psest_0750 at 821.813 kb on - strand, within Psest_0750 at 821.813 kb on - strand, within Psest_0750 at 821.813 kb on - strand, within Psest_0750 at 821.813 kb on - strand, within Psest_0750 at 821.833 kb on + strand, within Psest_0750 at 821.833 kb on + strand, within Psest_0750 at 822.407 kb on + strand, within Psest_0751
Per-strain Table
Position Strand Gene LocusTag Fraction LB 26C sample1 remove 820,536 + +0.7 820,536 + -1.3 820,536 + +1.4 820,537 - +1.0 820,537 - +2.1 820,537 - -0.2 820,537 - -1.6 820,558 + -0.2 820,629 + -0.9 820,629 + +1.0 820,629 + +0.8 820,630 - -0.6 820,630 - +0.4 820,630 - +1.4 820,630 - -1.3 820,780 + -0.1 820,900 - -2.2 820,905 - +0.3 821,049 + Psest_0749 0.16 -0.4 821,050 - Psest_0749 0.16 +1.3 821,176 + Psest_0749 0.34 -1.2 821,177 - Psest_0749 0.34 -1.6 821,177 - Psest_0749 0.34 -0.6 821,177 - Psest_0749 0.34 -1.6 821,180 - Psest_0749 0.34 +0.4 821,180 - Psest_0749 0.34 -1.4 821,180 - Psest_0749 0.34 -0.1 821,180 - Psest_0749 0.34 -1.8 821,180 - Psest_0749 0.34 -0.9 821,203 + Psest_0749 0.38 +1.4 821,203 + Psest_0749 0.38 -0.2 821,203 + Psest_0749 0.38 +1.1 821,203 + Psest_0749 0.38 -0.8 821,204 - Psest_0749 0.38 -0.9 821,296 + Psest_0749 0.51 -0.6 821,525 - Psest_0749 0.83 +0.2 821,700 - -0.4 821,755 - -0.2 821,784 + -0.2 821,784 + -0.2 821,784 + +0.8 821,784 + -0.2 821,785 - -0.1 821,812 + Psest_0750 0.15 -1.4 821,812 + Psest_0750 0.15 +1.0 821,812 + Psest_0750 0.15 -1.9 821,812 + Psest_0750 0.15 -2.3 821,812 + Psest_0750 0.15 -0.9 821,813 - Psest_0750 0.15 +1.5 821,813 - Psest_0750 0.15 +1.4 821,813 - Psest_0750 0.15 +1.0 821,813 - Psest_0750 0.15 -0.3 821,813 - Psest_0750 0.15 +0.3 821,833 + Psest_0750 0.21 +0.8 821,833 + Psest_0750 0.21 +0.8 822,407 + Psest_0751 0.22 -0.2
Or see this region's nucleotide sequence