Experiment: LB 26C sample1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0649 and Psest_0650 are separated by 196 nucleotides Psest_0650 and Psest_0651 are separated by 94 nucleotides
Psest_0649: Psest_0649 - Glutamate decarboxylase and related PLP-dependent proteins, at 704,318 to 705,841
_0649
Psest_0650: Psest_0650 - RNA polymerase sigma factor, sigma-70 family, at 706,038 to 706,535
_0650
Psest_0651: Psest_0651 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 706,630 to 709,023
_0651
Position (kb) 706
707 Strain fitness (log2 ratio) -2
-1
0
1
2 at 705.552 kb on + strand, within Psest_0649 at 705.552 kb on + strand, within Psest_0649 at 705.552 kb on + strand, within Psest_0649 at 705.553 kb on - strand, within Psest_0649 at 705.570 kb on + strand, within Psest_0649 at 705.570 kb on + strand, within Psest_0649 at 705.570 kb on + strand, within Psest_0649 at 705.588 kb on + strand, within Psest_0649 at 705.589 kb on - strand, within Psest_0649 at 705.589 kb on - strand, within Psest_0649 at 706.040 kb on - strand at 706.089 kb on - strand, within Psest_0650 at 706.089 kb on - strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.200 kb on + strand, within Psest_0650 at 706.201 kb on - strand, within Psest_0650 at 706.351 kb on + strand, within Psest_0650 at 706.351 kb on + strand, within Psest_0650 at 706.352 kb on - strand, within Psest_0650 at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.492 kb on + strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.493 kb on - strand at 706.568 kb on - strand at 706.712 kb on + strand at 706.712 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.715 kb on + strand at 706.716 kb on - strand at 706.822 kb on - strand at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.922 kb on + strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.923 kb on - strand, within Psest_0651 at 706.938 kb on - strand, within Psest_0651 at 707.086 kb on + strand, within Psest_0651 at 707.086 kb on + strand, within Psest_0651 at 707.357 kb on + strand, within Psest_0651 at 707.450 kb on + strand, within Psest_0651 at 707.451 kb on - strand, within Psest_0651 at 707.489 kb on + strand, within Psest_0651 at 707.489 kb on + strand, within Psest_0651
Per-strain Table
Position Strand Gene LocusTag Fraction LB 26C sample1 remove 705,552 + Psest_0649 0.81 -1.2 705,552 + Psest_0649 0.81 -1.0 705,552 + Psest_0649 0.81 +0.4 705,553 - Psest_0649 0.81 -1.2 705,570 + Psest_0649 0.82 -0.1 705,570 + Psest_0649 0.82 -1.8 705,570 + Psest_0649 0.82 +1.8 705,588 + Psest_0649 0.83 +0.6 705,589 - Psest_0649 0.83 -0.9 705,589 - Psest_0649 0.83 +0.7 706,040 - +2.4 706,089 - Psest_0650 0.10 -0.9 706,089 - Psest_0650 0.10 -1.4 706,200 + Psest_0650 0.33 -0.9 706,200 + Psest_0650 0.33 +0.7 706,200 + Psest_0650 0.33 -2.3 706,201 - Psest_0650 0.33 -0.6 706,351 + Psest_0650 0.63 +1.1 706,351 + Psest_0650 0.63 -0.2 706,352 - Psest_0650 0.63 -1.9 706,492 + +1.0 706,492 + +0.3 706,492 + -1.8 706,492 + +0.4 706,492 + -1.3 706,492 + -1.3 706,492 + +0.9 706,492 + -1.2 706,492 + -1.2 706,492 + -0.4 706,493 - +1.8 706,493 - -1.6 706,493 - -0.6 706,493 - +1.0 706,568 - +1.2 706,712 + +0.4 706,712 + +0.2 706,715 + -0.2 706,715 + -1.5 706,715 + +0.4 706,715 + +2.4 706,716 - +2.5 706,822 - -0.2 706,922 + Psest_0651 0.12 -0.9 706,922 + Psest_0651 0.12 +2.0 706,922 + Psest_0651 0.12 +1.4 706,922 + Psest_0651 0.12 +1.0 706,922 + Psest_0651 0.12 +0.7 706,923 - Psest_0651 0.12 +0.4 706,923 - Psest_0651 0.12 -1.8 706,923 - Psest_0651 0.12 -1.3 706,923 - Psest_0651 0.12 -0.7 706,923 - Psest_0651 0.12 -1.0 706,923 - Psest_0651 0.12 -0.1 706,923 - Psest_0651 0.12 -0.2 706,938 - Psest_0651 0.13 +1.4 707,086 + Psest_0651 0.19 -1.2 707,086 + Psest_0651 0.19 -1.6 707,357 + Psest_0651 0.30 -1.2 707,450 + Psest_0651 0.34 +1.4 707,451 - Psest_0651 0.34 +0.8 707,489 + Psest_0651 0.36 +0.8 707,489 + Psest_0651 0.36 +1.1
Or see this region's nucleotide sequence