Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05500 and PGA1_c05510 are separated by 105 nucleotides PGA1_c05510 and PGA1_c05520 are separated by 48 nucleotides PGA1_c05520 and PGA1_c05530 are separated by 111 nucleotides
PGA1_c05500: PGA1_c05500 - putative purine permease, at 561,691 to 563,118
_c05500
PGA1_c05510: PGA1_c05510 - glyceraldehyde-3-phosphate dehydrogenase 1, at 563,224 to 564,285
_c05510
PGA1_c05520: PGA1_c05520 - hypothetical protein, at 564,334 to 564,834
_c05520
PGA1_c05530: PGA1_c05530 - putative allantoin catabolism protein, at 564,946 to 565,938
_c05530
Position (kb) 563
564
565 Strain fitness (log2 ratio) -2
-1
0
1
2 at 562.256 kb on + strand, within PGA1_c05500 at 562.286 kb on + strand, within PGA1_c05500 at 562.286 kb on + strand, within PGA1_c05500 at 562.291 kb on + strand, within PGA1_c05500 at 562.383 kb on + strand, within PGA1_c05500 at 562.383 kb on + strand, within PGA1_c05500 at 562.391 kb on - strand, within PGA1_c05500 at 562.420 kb on + strand, within PGA1_c05500 at 562.427 kb on + strand, within PGA1_c05500 at 562.435 kb on - strand, within PGA1_c05500 at 562.481 kb on + strand, within PGA1_c05500 at 562.509 kb on - strand, within PGA1_c05500 at 562.641 kb on - strand, within PGA1_c05500 at 562.647 kb on + strand, within PGA1_c05500 at 562.647 kb on + strand, within PGA1_c05500 at 562.664 kb on + strand, within PGA1_c05500 at 562.683 kb on - strand, within PGA1_c05500 at 562.739 kb on - strand, within PGA1_c05500 at 562.755 kb on + strand, within PGA1_c05500 at 562.918 kb on - strand, within PGA1_c05500 at 562.945 kb on + strand, within PGA1_c05500 at 562.953 kb on - strand, within PGA1_c05500 at 562.956 kb on + strand, within PGA1_c05500 at 562.982 kb on + strand at 562.982 kb on + strand at 562.982 kb on + strand at 562.990 kb on - strand at 562.990 kb on - strand at 562.992 kb on + strand at 563.012 kb on + strand at 563.017 kb on + strand at 563.017 kb on + strand at 563.025 kb on - strand at 563.086 kb on + strand at 563.092 kb on + strand at 563.099 kb on - strand at 563.123 kb on + strand at 563.123 kb on + strand at 563.128 kb on + strand at 563.133 kb on + strand at 563.135 kb on - strand at 563.136 kb on - strand at 563.376 kb on + strand, within PGA1_c05510 at 563.376 kb on + strand, within PGA1_c05510 at 563.381 kb on + strand, within PGA1_c05510 at 563.384 kb on - strand, within PGA1_c05510 at 563.384 kb on - strand, within PGA1_c05510 at 563.410 kb on - strand, within PGA1_c05510 at 563.410 kb on - strand, within PGA1_c05510 at 563.488 kb on - strand, within PGA1_c05510 at 563.649 kb on + strand, within PGA1_c05510 at 563.734 kb on - strand, within PGA1_c05510 at 563.734 kb on - strand, within PGA1_c05510 at 563.735 kb on + strand, within PGA1_c05510 at 563.782 kb on - strand, within PGA1_c05510 at 563.831 kb on - strand, within PGA1_c05510 at 563.860 kb on + strand, within PGA1_c05510 at 563.904 kb on + strand, within PGA1_c05510 at 563.904 kb on + strand, within PGA1_c05510 at 563.958 kb on + strand, within PGA1_c05510 at 563.981 kb on - strand, within PGA1_c05510 at 563.981 kb on - strand, within PGA1_c05510 at 564.026 kb on - strand, within PGA1_c05510 at 564.026 kb on - strand, within PGA1_c05510 at 564.054 kb on + strand, within PGA1_c05510 at 564.062 kb on + strand, within PGA1_c05510 at 564.062 kb on - strand, within PGA1_c05510 at 564.102 kb on - strand, within PGA1_c05510 at 564.163 kb on + strand, within PGA1_c05510 at 564.163 kb on + strand, within PGA1_c05510 at 564.215 kb on - strand at 564.227 kb on - strand at 564.227 kb on - strand at 564.227 kb on - strand at 564.227 kb on - strand at 564.227 kb on - strand at 564.328 kb on - strand at 564.338 kb on + strand at 564.343 kb on + strand at 564.522 kb on - strand, within PGA1_c05520 at 564.600 kb on - strand, within PGA1_c05520 at 564.678 kb on - strand, within PGA1_c05520 at 564.693 kb on + strand, within PGA1_c05520 at 564.712 kb on + strand, within PGA1_c05520 at 564.743 kb on + strand, within PGA1_c05520 at 564.762 kb on + strand, within PGA1_c05520 at 564.807 kb on - strand at 564.850 kb on - strand at 564.850 kb on - strand at 564.850 kb on - strand at 564.850 kb on - strand at 564.850 kb on - strand at 564.865 kb on - strand at 564.893 kb on + strand at 564.900 kb on + strand at 564.901 kb on - strand at 564.939 kb on + strand at 564.947 kb on - strand at 564.947 kb on - strand at 564.947 kb on - strand at 564.947 kb on - strand at 564.947 kb on - strand at 564.961 kb on + strand at 564.974 kb on - strand at 565.007 kb on + strand at 565.153 kb on - strand, within PGA1_c05530 at 565.180 kb on - strand, within PGA1_c05530 at 565.186 kb on + strand, within PGA1_c05530
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 562,256 + PGA1_c05500 0.40 -0.8 562,286 + PGA1_c05500 0.42 +1.5 562,286 + PGA1_c05500 0.42 +0.6 562,291 + PGA1_c05500 0.42 -0.2 562,383 + PGA1_c05500 0.48 +0.1 562,383 + PGA1_c05500 0.48 +0.2 562,391 - PGA1_c05500 0.49 -0.3 562,420 + PGA1_c05500 0.51 -0.2 562,427 + PGA1_c05500 0.52 +1.2 562,435 - PGA1_c05500 0.52 -1.0 562,481 + PGA1_c05500 0.55 +0.6 562,509 - PGA1_c05500 0.57 +0.6 562,641 - PGA1_c05500 0.67 -0.1 562,647 + PGA1_c05500 0.67 -0.4 562,647 + PGA1_c05500 0.67 +0.7 562,664 + PGA1_c05500 0.68 +1.1 562,683 - PGA1_c05500 0.69 -0.1 562,739 - PGA1_c05500 0.73 +0.4 562,755 + PGA1_c05500 0.75 +0.6 562,918 - PGA1_c05500 0.86 +0.2 562,945 + PGA1_c05500 0.88 +0.4 562,953 - PGA1_c05500 0.88 -0.9 562,956 + PGA1_c05500 0.89 -0.2 562,982 + -0.9 562,982 + -0.1 562,982 + -0.4 562,990 - +0.8 562,990 - -0.5 562,992 + -1.3 563,012 + +0.5 563,017 + +0.6 563,017 + +1.0 563,025 - -0.0 563,086 + +0.5 563,092 + +0.4 563,099 - +1.0 563,123 + -0.5 563,123 + +0.1 563,128 + -0.4 563,133 + +0.9 563,135 - -0.2 563,136 - -0.1 563,376 + PGA1_c05510 0.14 -1.1 563,376 + PGA1_c05510 0.14 +0.7 563,381 + PGA1_c05510 0.15 +0.9 563,384 - PGA1_c05510 0.15 +1.0 563,384 - PGA1_c05510 0.15 +1.1 563,410 - PGA1_c05510 0.18 +0.7 563,410 - PGA1_c05510 0.18 +0.6 563,488 - PGA1_c05510 0.25 +2.0 563,649 + PGA1_c05510 0.40 +0.6 563,734 - PGA1_c05510 0.48 +0.5 563,734 - PGA1_c05510 0.48 -1.0 563,735 + PGA1_c05510 0.48 -2.2 563,782 - PGA1_c05510 0.53 +0.4 563,831 - PGA1_c05510 0.57 -0.4 563,860 + PGA1_c05510 0.60 -0.3 563,904 + PGA1_c05510 0.64 -0.7 563,904 + PGA1_c05510 0.64 +1.0 563,958 + PGA1_c05510 0.69 -0.3 563,981 - PGA1_c05510 0.71 +1.2 563,981 - PGA1_c05510 0.71 +0.4 564,026 - PGA1_c05510 0.76 +1.7 564,026 - PGA1_c05510 0.76 +0.0 564,054 + PGA1_c05510 0.78 +0.5 564,062 + PGA1_c05510 0.79 +0.6 564,062 - PGA1_c05510 0.79 +0.4 564,102 - PGA1_c05510 0.83 +0.0 564,163 + PGA1_c05510 0.88 +0.2 564,163 + PGA1_c05510 0.88 +1.3 564,215 - +0.4 564,227 - +1.3 564,227 - +0.8 564,227 - +0.6 564,227 - +0.3 564,227 - +0.8 564,328 - -0.6 564,338 + -1.4 564,343 + +0.7 564,522 - PGA1_c05520 0.38 -0.4 564,600 - PGA1_c05520 0.53 +0.5 564,678 - PGA1_c05520 0.69 -0.3 564,693 + PGA1_c05520 0.72 -0.3 564,712 + PGA1_c05520 0.75 -0.5 564,743 + PGA1_c05520 0.82 -0.4 564,762 + PGA1_c05520 0.85 +0.1 564,807 - -0.7 564,850 - +0.3 564,850 - -0.8 564,850 - +0.9 564,850 - +0.2 564,850 - +0.3 564,865 - +0.1 564,893 + -1.1 564,900 + +0.4 564,901 - +0.0 564,939 + +1.8 564,947 - +0.2 564,947 - +0.9 564,947 - -0.3 564,947 - +0.7 564,947 - -0.6 564,961 + -0.0 564,974 - -0.6 565,007 + +2.2 565,153 - PGA1_c05530 0.21 +0.5 565,180 - PGA1_c05530 0.24 +0.5 565,186 + PGA1_c05530 0.24 +0.9
Or see this region's nucleotide sequence