Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4172

Experiment: LB 26C sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4171 and Psest_4172 overlap by 29 nucleotidesPsest_4172 and Psest_4173 are separated by 20 nucleotidesPsest_4173 and Psest_4174 are separated by 20 nucleotides Psest_4171: Psest_4171 - Flagellar motor switch protein, at 4,349,424 to 4,350,491 _4171 Psest_4172: Psest_4172 - flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF), at 4,350,463 to 4,352,139 _4172 Psest_4173: Psest_4173 - flagellar hook-basal body complex protein FliE, at 4,352,160 to 4,352,480 _4173 Psest_4174: Psest_4174 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,352,501 to 4,353,913 _4174 Position (kb) 4350 4351 4352 4353Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4349.512 kb on - strandat 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.722 kb on + strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4349.723 kb on - strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.124 kb on + strand, within Psest_4171at 4350.125 kb on - strand, within Psest_4171at 4350.125 kb on - strand, within Psest_4171at 4350.125 kb on - strand, within Psest_4171at 4350.125 kb on - strand, within Psest_4171at 4350.125 kb on - strand, within Psest_4171at 4350.191 kb on - strand, within Psest_4171at 4350.191 kb on - strand, within Psest_4171at 4350.229 kb on + strand, within Psest_4171at 4350.229 kb on + strand, within Psest_4171at 4350.229 kb on + strand, within Psest_4171at 4350.229 kb on + strand, within Psest_4171at 4350.230 kb on - strand, within Psest_4171at 4350.230 kb on - strand, within Psest_4171at 4350.637 kb on - strand, within Psest_4172at 4350.637 kb on - strand, within Psest_4172at 4350.637 kb on - strand, within Psest_4172at 4351.110 kb on - strand, within Psest_4172at 4351.428 kb on - strand, within Psest_4172at 4351.473 kb on + strand, within Psest_4172at 4351.474 kb on - strand, within Psest_4172at 4351.699 kb on + strand, within Psest_4172at 4351.699 kb on + strand, within Psest_4172at 4351.700 kb on - strand, within Psest_4172at 4351.700 kb on - strand, within Psest_4172at 4351.945 kb on + strand, within Psest_4172at 4351.946 kb on - strand, within Psest_4172at 4351.946 kb on - strand, within Psest_4172at 4352.024 kb on + strandat 4352.024 kb on + strandat 4352.024 kb on + strandat 4352.024 kb on + strandat 4352.144 kb on + strandat 4352.144 kb on + strandat 4352.144 kb on + strandat 4352.144 kb on + strandat 4352.145 kb on - strandat 4352.145 kb on - strandat 4352.145 kb on - strandat 4352.898 kb on + strand, within Psest_4174at 4352.898 kb on + strand, within Psest_4174at 4352.899 kb on - strand, within Psest_4174at 4352.899 kb on - strand, within Psest_4174

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 26C sample1
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4,349,512 - -1.4
4,349,722 + Psest_4171 0.28 +0.9
4,349,722 + Psest_4171 0.28 -1.9
4,349,722 + Psest_4171 0.28 -2.0
4,349,722 + Psest_4171 0.28 +0.4
4,349,722 + Psest_4171 0.28 -0.2
4,349,722 + Psest_4171 0.28 +0.8
4,349,722 + Psest_4171 0.28 +3.8
4,349,722 + Psest_4171 0.28 +0.3
4,349,722 + Psest_4171 0.28 +0.1
4,349,722 + Psest_4171 0.28 -1.7
4,349,722 + Psest_4171 0.28 +0.4
4,349,723 - Psest_4171 0.28 -0.2
4,349,723 - Psest_4171 0.28 +0.4
4,349,723 - Psest_4171 0.28 +1.4
4,349,723 - Psest_4171 0.28 -0.0
4,349,723 - Psest_4171 0.28 +0.6
4,349,723 - Psest_4171 0.28 +1.8
4,349,723 - Psest_4171 0.28 -1.6
4,350,124 + Psest_4171 0.66 -0.7
4,350,124 + Psest_4171 0.66 -0.1
4,350,124 + Psest_4171 0.66 -0.3
4,350,124 + Psest_4171 0.66 +0.4
4,350,124 + Psest_4171 0.66 +0.2
4,350,124 + Psest_4171 0.66 -0.2
4,350,124 + Psest_4171 0.66 -2.8
4,350,125 - Psest_4171 0.66 -1.5
4,350,125 - Psest_4171 0.66 -0.4
4,350,125 - Psest_4171 0.66 -1.9
4,350,125 - Psest_4171 0.66 -0.8
4,350,125 - Psest_4171 0.66 -0.8
4,350,191 - Psest_4171 0.72 +1.1
4,350,191 - Psest_4171 0.72 +2.4
4,350,229 + Psest_4171 0.75 -0.6
4,350,229 + Psest_4171 0.75 +0.4
4,350,229 + Psest_4171 0.75 +0.3
4,350,229 + Psest_4171 0.75 -0.6
4,350,230 - Psest_4171 0.75 -0.0
4,350,230 - Psest_4171 0.75 -0.2
4,350,637 - Psest_4172 0.10 -1.3
4,350,637 - Psest_4172 0.10 +1.2
4,350,637 - Psest_4172 0.10 -0.0
4,351,110 - Psest_4172 0.39 +0.4
4,351,428 - Psest_4172 0.58 -1.4
4,351,473 + Psest_4172 0.60 -0.9
4,351,474 - Psest_4172 0.60 -2.8
4,351,699 + Psest_4172 0.74 +0.6
4,351,699 + Psest_4172 0.74 -2.2
4,351,700 - Psest_4172 0.74 -1.6
4,351,700 - Psest_4172 0.74 -0.9
4,351,945 + Psest_4172 0.88 +1.4
4,351,946 - Psest_4172 0.88 +3.0
4,351,946 - Psest_4172 0.88 -0.2
4,352,024 + +1.2
4,352,024 + +1.4
4,352,024 + -0.2
4,352,024 + +0.1
4,352,144 + +1.4
4,352,144 + -0.2
4,352,144 + +1.4
4,352,144 + -1.2
4,352,145 - -0.2
4,352,145 - +0.2
4,352,145 - -0.9
4,352,898 + Psest_4174 0.28 +0.3
4,352,898 + Psest_4174 0.28 +0.8
4,352,899 - Psest_4174 0.28 -0.9
4,352,899 - Psest_4174 0.28 -0.6

Or see this region's nucleotide sequence