Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3969

Experiment: LB 26C sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3968 and Psest_3969 are separated by 2 nucleotidesPsest_3969 and Psest_3970 are separated by 102 nucleotides Psest_3968: Psest_3968 - Acyl-CoA dehydrogenases, at 4,135,143 to 4,136,933 _3968 Psest_3969: Psest_3969 - 3-hydroxyacyl-CoA dehydrogenase, at 4,136,936 to 4,138,174 _3969 Psest_3970: Psest_3970 - Transcriptional regulator, at 4,138,277 to 4,139,176 _3970 Position (kb) 4136 4137 4138 4139Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4136.330 kb on + strand, within Psest_3968at 4136.331 kb on - strand, within Psest_3968at 4136.377 kb on + strand, within Psest_3968at 4136.378 kb on - strand, within Psest_3968at 4136.378 kb on - strand, within Psest_3968at 4136.378 kb on - strand, within Psest_3968at 4136.378 kb on - strand, within Psest_3968at 4136.378 kb on - strand, within Psest_3968at 4136.490 kb on + strand, within Psest_3968at 4136.490 kb on + strand, within Psest_3968at 4136.490 kb on + strand, within Psest_3968at 4136.490 kb on + strand, within Psest_3968at 4136.490 kb on + strand, within Psest_3968at 4136.491 kb on - strand, within Psest_3968at 4136.491 kb on - strand, within Psest_3968at 4136.491 kb on - strand, within Psest_3968at 4136.495 kb on - strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.527 kb on + strand, within Psest_3968at 4136.528 kb on - strand, within Psest_3968at 4136.563 kb on + strand, within Psest_3968at 4136.563 kb on + strand, within Psest_3968at 4136.564 kb on - strand, within Psest_3968at 4136.564 kb on - strand, within Psest_3968at 4136.686 kb on + strand, within Psest_3968at 4136.687 kb on - strand, within Psest_3968at 4136.687 kb on - strand, within Psest_3968at 4136.696 kb on - strand, within Psest_3968at 4136.696 kb on - strand, within Psest_3968at 4136.797 kb on + strandat 4136.883 kb on + strandat 4136.884 kb on - strandat 4136.884 kb on - strandat 4136.884 kb on - strandat 4136.884 kb on - strandat 4136.884 kb on - strandat 4136.884 kb on - strandat 4136.926 kb on + strandat 4136.927 kb on - strandat 4136.927 kb on - strandat 4136.927 kb on - strandat 4136.927 kb on - strandat 4136.927 kb on - strandat 4136.927 kb on - strandat 4137.129 kb on + strand, within Psest_3969at 4137.129 kb on + strand, within Psest_3969at 4137.130 kb on - strand, within Psest_3969at 4137.130 kb on - strand, within Psest_3969at 4137.336 kb on + strand, within Psest_3969at 4137.337 kb on - strand, within Psest_3969at 4137.337 kb on - strand, within Psest_3969at 4137.471 kb on + strand, within Psest_3969at 4137.471 kb on + strand, within Psest_3969at 4137.471 kb on + strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.472 kb on - strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.573 kb on + strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.574 kb on - strand, within Psest_3969at 4137.931 kb on - strand, within Psest_3969at 4137.949 kb on + strand, within Psest_3969at 4138.004 kb on - strand, within Psest_3969at 4138.011 kb on + strand, within Psest_3969at 4138.011 kb on + strand, within Psest_3969at 4138.011 kb on + strand, within Psest_3969at 4138.012 kb on - strand, within Psest_3969at 4138.012 kb on - strand, within Psest_3969at 4138.012 kb on - strand, within Psest_3969at 4138.012 kb on - strand, within Psest_3969at 4138.012 kb on - strand, within Psest_3969at 4138.012 kb on - strand, within Psest_3969at 4138.012 kb on - strand, within Psest_3969at 4138.012 kb on - strand, within Psest_3969at 4138.012 kb on - strand, within Psest_3969at 4138.592 kb on + strand, within Psest_3970at 4138.592 kb on + strand, within Psest_3970at 4138.593 kb on - strand, within Psest_3970at 4138.593 kb on - strand, within Psest_3970at 4138.593 kb on - strand, within Psest_3970at 4138.593 kb on - strand, within Psest_3970at 4138.593 kb on - strand, within Psest_3970at 4138.593 kb on - strand, within Psest_3970at 4138.764 kb on + strand, within Psest_3970at 4138.764 kb on + strand, within Psest_3970at 4138.764 kb on + strand, within Psest_3970at 4138.765 kb on - strand, within Psest_3970at 4138.765 kb on - strand, within Psest_3970at 4138.765 kb on - strand, within Psest_3970at 4138.765 kb on - strand, within Psest_3970at 4138.765 kb on - strand, within Psest_3970at 4138.943 kb on + strand, within Psest_3970at 4138.943 kb on + strand, within Psest_3970at 4138.944 kb on - strand, within Psest_3970at 4138.944 kb on - strand, within Psest_3970at 4138.944 kb on - strand, within Psest_3970at 4138.944 kb on - strand, within Psest_3970at 4138.959 kb on - strand, within Psest_3970at 4139.028 kb on - strand, within Psest_3970

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 26C sample1
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4,136,330 + Psest_3968 0.66 +0.5
4,136,331 - Psest_3968 0.66 +1.5
4,136,377 + Psest_3968 0.69 -1.1
4,136,378 - Psest_3968 0.69 +0.1
4,136,378 - Psest_3968 0.69 -1.6
4,136,378 - Psest_3968 0.69 +0.9
4,136,378 - Psest_3968 0.69 +1.5
4,136,378 - Psest_3968 0.69 -0.2
4,136,490 + Psest_3968 0.75 +1.1
4,136,490 + Psest_3968 0.75 -0.5
4,136,490 + Psest_3968 0.75 -2.1
4,136,490 + Psest_3968 0.75 -1.3
4,136,490 + Psest_3968 0.75 -0.5
4,136,491 - Psest_3968 0.75 +0.9
4,136,491 - Psest_3968 0.75 -0.9
4,136,491 - Psest_3968 0.75 -1.3
4,136,495 - Psest_3968 0.75 -0.5
4,136,527 + Psest_3968 0.77 -1.3
4,136,527 + Psest_3968 0.77 +1.5
4,136,527 + Psest_3968 0.77 -0.1
4,136,527 + Psest_3968 0.77 -0.1
4,136,527 + Psest_3968 0.77 +0.8
4,136,527 + Psest_3968 0.77 -0.9
4,136,528 - Psest_3968 0.77 -0.6
4,136,563 + Psest_3968 0.79 +2.1
4,136,563 + Psest_3968 0.79 -1.3
4,136,564 - Psest_3968 0.79 -1.5
4,136,564 - Psest_3968 0.79 -2.3
4,136,686 + Psest_3968 0.86 -1.0
4,136,687 - Psest_3968 0.86 +0.5
4,136,687 - Psest_3968 0.86 +2.8
4,136,696 - Psest_3968 0.87 -0.3
4,136,696 - Psest_3968 0.87 -0.4
4,136,797 + -0.1
4,136,883 + -0.2
4,136,884 - +1.1
4,136,884 - -0.3
4,136,884 - -0.5
4,136,884 - -0.4
4,136,884 - -0.8
4,136,884 - -0.4
4,136,926 + -0.9
4,136,927 - +0.6
4,136,927 - +0.5
4,136,927 - -0.9
4,136,927 - -1.7
4,136,927 - +0.5
4,136,927 - -0.8
4,137,129 + Psest_3969 0.16 -0.3
4,137,129 + Psest_3969 0.16 +1.5
4,137,130 - Psest_3969 0.16 +1.5
4,137,130 - Psest_3969 0.16 -0.1
4,137,336 + Psest_3969 0.32 +0.6
4,137,337 - Psest_3969 0.32 -0.6
4,137,337 - Psest_3969 0.32 -0.2
4,137,471 + Psest_3969 0.43 -1.9
4,137,471 + Psest_3969 0.43 -0.5
4,137,471 + Psest_3969 0.43 +0.5
4,137,472 - Psest_3969 0.43 -0.1
4,137,472 - Psest_3969 0.43 -0.5
4,137,472 - Psest_3969 0.43 +0.1
4,137,472 - Psest_3969 0.43 -0.6
4,137,472 - Psest_3969 0.43 -0.5
4,137,472 - Psest_3969 0.43 -1.5
4,137,472 - Psest_3969 0.43 -2.2
4,137,573 + Psest_3969 0.51 +2.2
4,137,573 + Psest_3969 0.51 -1.1
4,137,573 + Psest_3969 0.51 +2.8
4,137,573 + Psest_3969 0.51 -0.1
4,137,573 + Psest_3969 0.51 -1.3
4,137,573 + Psest_3969 0.51 -0.5
4,137,573 + Psest_3969 0.51 -2.1
4,137,574 - Psest_3969 0.51 -0.1
4,137,574 - Psest_3969 0.51 -1.1
4,137,574 - Psest_3969 0.51 -0.5
4,137,574 - Psest_3969 0.51 -0.2
4,137,574 - Psest_3969 0.51 +0.1
4,137,574 - Psest_3969 0.51 -0.5
4,137,574 - Psest_3969 0.51 +0.4
4,137,574 - Psest_3969 0.51 -0.5
4,137,574 - Psest_3969 0.51 -0.5
4,137,931 - Psest_3969 0.80 +0.1
4,137,949 + Psest_3969 0.82 -1.3
4,138,004 - Psest_3969 0.86 -1.1
4,138,011 + Psest_3969 0.87 -2.3
4,138,011 + Psest_3969 0.87 -0.5
4,138,011 + Psest_3969 0.87 -2.9
4,138,012 - Psest_3969 0.87 -1.6
4,138,012 - Psest_3969 0.87 -0.6
4,138,012 - Psest_3969 0.87 -1.1
4,138,012 - Psest_3969 0.87 -3.1
4,138,012 - Psest_3969 0.87 -1.1
4,138,012 - Psest_3969 0.87 -0.6
4,138,012 - Psest_3969 0.87 +0.1
4,138,012 - Psest_3969 0.87 +0.5
4,138,012 - Psest_3969 0.87 +0.2
4,138,592 + Psest_3970 0.35 -1.9
4,138,592 + Psest_3970 0.35 +0.5
4,138,593 - Psest_3970 0.35 -0.8
4,138,593 - Psest_3970 0.35 -1.1
4,138,593 - Psest_3970 0.35 +3.5
4,138,593 - Psest_3970 0.35 +0.5
4,138,593 - Psest_3970 0.35 -1.3
4,138,593 - Psest_3970 0.35 +0.0
4,138,764 + Psest_3970 0.54 -0.5
4,138,764 + Psest_3970 0.54 +0.5
4,138,764 + Psest_3970 0.54 -0.1
4,138,765 - Psest_3970 0.54 -0.1
4,138,765 - Psest_3970 0.54 +0.1
4,138,765 - Psest_3970 0.54 -0.0
4,138,765 - Psest_3970 0.54 -0.5
4,138,765 - Psest_3970 0.54 -2.5
4,138,943 + Psest_3970 0.74 +0.5
4,138,943 + Psest_3970 0.74 +2.5
4,138,944 - Psest_3970 0.74 +1.5
4,138,944 - Psest_3970 0.74 +0.1
4,138,944 - Psest_3970 0.74 -0.6
4,138,944 - Psest_3970 0.74 -0.2
4,138,959 - Psest_3970 0.76 +0.0
4,139,028 - Psest_3970 0.83 -1.1

Or see this region's nucleotide sequence