Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2692

Experiment: LB 26C sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2691 and Psest_2692 are separated by 197 nucleotidesPsest_2692 and Psest_2693 are separated by 71 nucleotidesPsest_2693 and Psest_2694 are separated by 15 nucleotides Psest_2691: Psest_2691 - benzoate transporter, at 2,880,230 to 2,881,435 _2691 Psest_2692: Psest_2692 - catechol 1,2-dioxygenase, proteobacterial, at 2,881,633 to 2,882,574 _2692 Psest_2693: Psest_2693 - muconolactone delta-isomerase, at 2,882,646 to 2,882,936 _2693 Psest_2694: Psest_2694 - muconate and chloromuconate cycloisomerases, at 2,882,952 to 2,884,073 _2694 Position (kb) 2881 2882 2883Strain fitness (log2 ratio) -2 -1 0 1 2at 2880.683 kb on - strand, within Psest_2691at 2880.683 kb on - strand, within Psest_2691at 2880.791 kb on - strand, within Psest_2691at 2880.957 kb on + strand, within Psest_2691at 2880.957 kb on + strand, within Psest_2691at 2880.957 kb on + strand, within Psest_2691at 2880.958 kb on - strand, within Psest_2691at 2880.958 kb on - strand, within Psest_2691at 2880.958 kb on - strand, within Psest_2691at 2880.961 kb on + strand, within Psest_2691at 2880.961 kb on + strand, within Psest_2691at 2880.961 kb on + strand, within Psest_2691at 2880.962 kb on - strand, within Psest_2691at 2880.962 kb on - strand, within Psest_2691at 2880.962 kb on - strand, within Psest_2691at 2880.962 kb on - strand, within Psest_2691at 2880.962 kb on - strand, within Psest_2691at 2881.138 kb on + strand, within Psest_2691at 2881.139 kb on - strand, within Psest_2691at 2881.140 kb on + strand, within Psest_2691at 2881.140 kb on + strand, within Psest_2691at 2881.140 kb on + strand, within Psest_2691at 2881.140 kb on + strand, within Psest_2691at 2881.140 kb on + strand, within Psest_2691at 2881.140 kb on + strand, within Psest_2691at 2881.141 kb on - strand, within Psest_2691at 2881.141 kb on - strand, within Psest_2691at 2881.236 kb on + strand, within Psest_2691at 2881.304 kb on + strand, within Psest_2691at 2881.304 kb on + strand, within Psest_2691at 2881.304 kb on + strand, within Psest_2691at 2881.304 kb on + strand, within Psest_2691at 2881.304 kb on + strand, within Psest_2691at 2881.304 kb on + strand, within Psest_2691at 2881.305 kb on - strand, within Psest_2691at 2881.305 kb on - strand, within Psest_2691at 2881.305 kb on - strand, within Psest_2691at 2881.305 kb on - strand, within Psest_2691at 2881.305 kb on - strand, within Psest_2691at 2881.305 kb on - strand, within Psest_2691at 2881.493 kb on + strandat 2881.493 kb on + strandat 2881.494 kb on - strandat 2881.494 kb on - strandat 2881.835 kb on + strand, within Psest_2692at 2881.835 kb on + strand, within Psest_2692at 2881.893 kb on + strand, within Psest_2692at 2881.894 kb on - strand, within Psest_2692at 2881.945 kb on + strand, within Psest_2692at 2881.946 kb on - strand, within Psest_2692at 2881.946 kb on - strand, within Psest_2692at 2881.946 kb on - strand, within Psest_2692at 2881.946 kb on - strand, within Psest_2692at 2882.009 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.051 kb on + strand, within Psest_2692at 2882.052 kb on - strand, within Psest_2692at 2882.052 kb on - strand, within Psest_2692at 2882.075 kb on + strand, within Psest_2692at 2882.075 kb on + strand, within Psest_2692at 2882.075 kb on + strand, within Psest_2692at 2882.076 kb on - strand, within Psest_2692at 2882.076 kb on - strand, within Psest_2692at 2882.076 kb on - strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.081 kb on + strand, within Psest_2692at 2882.082 kb on - strand, within Psest_2692at 2882.082 kb on - strand, within Psest_2692at 2882.082 kb on - strand, within Psest_2692at 2882.246 kb on + strand, within Psest_2692at 2882.246 kb on + strand, within Psest_2692at 2882.246 kb on + strand, within Psest_2692at 2882.393 kb on + strand, within Psest_2692at 2882.393 kb on + strand, within Psest_2692at 2882.566 kb on + strandat 2882.567 kb on - strandat 2882.593 kb on + strandat 2882.593 kb on + strandat 2882.593 kb on + strandat 2882.593 kb on + strandat 2882.593 kb on + strandat 2882.593 kb on + strandat 2882.594 kb on - strandat 2882.594 kb on - strandat 2882.594 kb on - strandat 2882.779 kb on + strand, within Psest_2693at 2882.779 kb on + strand, within Psest_2693at 2882.780 kb on - strand, within Psest_2693at 2882.780 kb on - strand, within Psest_2693at 2882.780 kb on - strand, within Psest_2693at 2882.780 kb on - strand, within Psest_2693at 2882.922 kb on + strandat 2882.954 kb on - strandat 2883.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 26C sample1
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2,880,683 - Psest_2691 0.38 +0.7
2,880,683 - Psest_2691 0.38 +1.2
2,880,791 - Psest_2691 0.47 -0.5
2,880,957 + Psest_2691 0.60 -1.9
2,880,957 + Psest_2691 0.60 -0.4
2,880,957 + Psest_2691 0.60 +0.1
2,880,958 - Psest_2691 0.60 -2.0
2,880,958 - Psest_2691 0.60 +1.3
2,880,958 - Psest_2691 0.60 -0.9
2,880,961 + Psest_2691 0.61 +1.0
2,880,961 + Psest_2691 0.61 -0.7
2,880,961 + Psest_2691 0.61 -0.6
2,880,962 - Psest_2691 0.61 -1.5
2,880,962 - Psest_2691 0.61 +0.5
2,880,962 - Psest_2691 0.61 +0.1
2,880,962 - Psest_2691 0.61 +1.1
2,880,962 - Psest_2691 0.61 -0.5
2,881,138 + Psest_2691 0.75 -1.0
2,881,139 - Psest_2691 0.75 +0.0
2,881,140 + Psest_2691 0.75 -0.2
2,881,140 + Psest_2691 0.75 -0.5
2,881,140 + Psest_2691 0.75 -0.8
2,881,140 + Psest_2691 0.75 -0.5
2,881,140 + Psest_2691 0.75 -1.5
2,881,140 + Psest_2691 0.75 -0.2
2,881,141 - Psest_2691 0.76 -0.8
2,881,141 - Psest_2691 0.76 +0.9
2,881,236 + Psest_2691 0.83 +0.2
2,881,304 + Psest_2691 0.89 -0.0
2,881,304 + Psest_2691 0.89 -0.6
2,881,304 + Psest_2691 0.89 +0.1
2,881,304 + Psest_2691 0.89 -1.7
2,881,304 + Psest_2691 0.89 +0.3
2,881,304 + Psest_2691 0.89 +0.5
2,881,305 - Psest_2691 0.89 -0.5
2,881,305 - Psest_2691 0.89 +0.2
2,881,305 - Psest_2691 0.89 -0.3
2,881,305 - Psest_2691 0.89 +0.6
2,881,305 - Psest_2691 0.89 +0.5
2,881,305 - Psest_2691 0.89 -1.0
2,881,493 + -1.1
2,881,493 + -0.4
2,881,494 - +1.0
2,881,494 - +1.3
2,881,835 + Psest_2692 0.21 +1.0
2,881,835 + Psest_2692 0.21 -0.7
2,881,893 + Psest_2692 0.28 +0.3
2,881,894 - Psest_2692 0.28 -0.8
2,881,945 + Psest_2692 0.33 +0.3
2,881,946 - Psest_2692 0.33 +0.3
2,881,946 - Psest_2692 0.33 -0.7
2,881,946 - Psest_2692 0.33 -0.5
2,881,946 - Psest_2692 0.33 -0.5
2,882,009 + Psest_2692 0.40 +0.2
2,882,051 + Psest_2692 0.44 -2.4
2,882,051 + Psest_2692 0.44 +0.1
2,882,051 + Psest_2692 0.44 +0.4
2,882,051 + Psest_2692 0.44 +0.7
2,882,051 + Psest_2692 0.44 +0.1
2,882,051 + Psest_2692 0.44 +0.2
2,882,052 - Psest_2692 0.44 +0.4
2,882,052 - Psest_2692 0.44 -1.6
2,882,075 + Psest_2692 0.47 +0.6
2,882,075 + Psest_2692 0.47 -1.3
2,882,075 + Psest_2692 0.47 -0.8
2,882,076 - Psest_2692 0.47 -0.4
2,882,076 - Psest_2692 0.47 -1.1
2,882,076 - Psest_2692 0.47 -1.0
2,882,081 + Psest_2692 0.48 -0.6
2,882,081 + Psest_2692 0.48 -0.6
2,882,081 + Psest_2692 0.48 +0.0
2,882,081 + Psest_2692 0.48 -1.1
2,882,081 + Psest_2692 0.48 +1.9
2,882,081 + Psest_2692 0.48 -0.3
2,882,081 + Psest_2692 0.48 -0.2
2,882,082 - Psest_2692 0.48 -1.3
2,882,082 - Psest_2692 0.48 -0.7
2,882,082 - Psest_2692 0.48 -1.5
2,882,246 + Psest_2692 0.65 -1.6
2,882,246 + Psest_2692 0.65 +0.1
2,882,246 + Psest_2692 0.65 +0.1
2,882,393 + Psest_2692 0.81 -1.2
2,882,393 + Psest_2692 0.81 -0.7
2,882,566 + -0.5
2,882,567 - +0.3
2,882,593 + +1.3
2,882,593 + +0.3
2,882,593 + -0.5
2,882,593 + -0.4
2,882,593 + +1.0
2,882,593 + -2.2
2,882,594 - +1.7
2,882,594 - +0.9
2,882,594 - +0.8
2,882,779 + Psest_2693 0.46 +0.1
2,882,779 + Psest_2693 0.46 -1.3
2,882,780 - Psest_2693 0.46 +0.1
2,882,780 - Psest_2693 0.46 -2.5
2,882,780 - Psest_2693 0.46 +0.2
2,882,780 - Psest_2693 0.46 -1.5
2,882,922 + +0.9
2,882,954 - +0.0
2,883,019 - -0.1

Or see this region's nucleotide sequence