Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02540 and PGA1_c02550 are separated by 11 nucleotides PGA1_c02550 and PGA1_c02560 overlap by 1 nucleotides PGA1_c02560 and PGA1_c02570 overlap by 14 nucleotides PGA1_c02570 and PGA1_c02580 are separated by 86 nucleotides
PGA1_c02540: PGA1_c02540 - Uncharacterized conserved protein, at 239,283 to 240,119
_c02540
PGA1_c02550: PGA1_c02550 - protocatechuate 3,4-dioxygenase alpha chain, at 240,131 to 240,775
_c02550
PGA1_c02560: PGA1_c02560 - protocatechuate 3,4-dioxygenase beta chain, at 240,775 to 241,500
_c02560
PGA1_c02570: PGA1_c02570 - putative 4-carboxymuconolactone decarboxylase PcaC, at 241,487 to 241,912
_c02570
PGA1_c02580: PGA1_c02580 - putative HTH-type transcriptional regulator pcaQ, at 241,999 to 242,916
_c02580
Position (kb) 240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2 at 239.807 kb on - strand, within PGA1_c02540 at 239.866 kb on + strand, within PGA1_c02540 at 239.866 kb on + strand, within PGA1_c02540 at 239.883 kb on + strand, within PGA1_c02540 at 239.883 kb on + strand, within PGA1_c02540 at 239.888 kb on + strand, within PGA1_c02540 at 239.898 kb on + strand, within PGA1_c02540 at 239.906 kb on - strand, within PGA1_c02540 at 239.974 kb on - strand, within PGA1_c02540 at 240.014 kb on - strand, within PGA1_c02540 at 240.019 kb on + strand, within PGA1_c02540 at 240.032 kb on + strand, within PGA1_c02540 at 240.069 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.074 kb on + strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.082 kb on - strand at 240.117 kb on - strand at 240.154 kb on + strand at 240.164 kb on + strand at 240.196 kb on - strand, within PGA1_c02550 at 240.196 kb on - strand, within PGA1_c02550 at 240.197 kb on - strand, within PGA1_c02550 at 240.219 kb on + strand, within PGA1_c02550 at 240.237 kb on - strand, within PGA1_c02550 at 240.241 kb on + strand, within PGA1_c02550 at 240.244 kb on - strand, within PGA1_c02550 at 240.246 kb on + strand, within PGA1_c02550 at 240.254 kb on - strand, within PGA1_c02550 at 240.296 kb on - strand, within PGA1_c02550 at 240.320 kb on + strand, within PGA1_c02550 at 240.337 kb on + strand, within PGA1_c02550 at 240.337 kb on + strand, within PGA1_c02550 at 240.343 kb on + strand, within PGA1_c02550 at 240.343 kb on + strand, within PGA1_c02550 at 240.345 kb on - strand, within PGA1_c02550 at 240.351 kb on - strand, within PGA1_c02550 at 240.351 kb on - strand, within PGA1_c02550 at 240.363 kb on + strand, within PGA1_c02550 at 240.363 kb on + strand, within PGA1_c02550 at 240.565 kb on + strand, within PGA1_c02550 at 240.605 kb on - strand, within PGA1_c02550 at 240.613 kb on + strand, within PGA1_c02550 at 240.613 kb on - strand, within PGA1_c02550 at 240.643 kb on - strand, within PGA1_c02550 at 240.650 kb on - strand, within PGA1_c02550 at 240.665 kb on + strand, within PGA1_c02550 at 240.700 kb on - strand, within PGA1_c02550 at 240.720 kb on - strand at 240.736 kb on + strand at 240.736 kb on + strand at 240.737 kb on - strand at 240.744 kb on - strand at 240.786 kb on - strand at 240.812 kb on - strand at 240.892 kb on + strand, within PGA1_c02560 at 240.897 kb on + strand, within PGA1_c02560 at 240.903 kb on - strand, within PGA1_c02560 at 240.938 kb on - strand, within PGA1_c02560 at 240.973 kb on - strand, within PGA1_c02560 at 240.975 kb on + strand, within PGA1_c02560 at 240.983 kb on - strand, within PGA1_c02560 at 240.990 kb on + strand, within PGA1_c02560 at 240.998 kb on - strand, within PGA1_c02560 at 240.998 kb on - strand, within PGA1_c02560 at 241.036 kb on - strand, within PGA1_c02560 at 241.042 kb on + strand, within PGA1_c02560 at 241.061 kb on + strand, within PGA1_c02560 at 241.061 kb on + strand, within PGA1_c02560 at 241.061 kb on + strand, within PGA1_c02560 at 241.067 kb on + strand, within PGA1_c02560 at 241.067 kb on + strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.069 kb on - strand, within PGA1_c02560 at 241.075 kb on - strand, within PGA1_c02560 at 241.082 kb on - strand, within PGA1_c02560 at 241.082 kb on - strand, within PGA1_c02560 at 241.112 kb on + strand, within PGA1_c02560 at 241.112 kb on + strand, within PGA1_c02560 at 241.119 kb on + strand, within PGA1_c02560 at 241.143 kb on + strand, within PGA1_c02560 at 241.227 kb on + strand, within PGA1_c02560 at 241.230 kb on - strand, within PGA1_c02560 at 241.240 kb on - strand, within PGA1_c02560 at 241.340 kb on + strand, within PGA1_c02560 at 241.348 kb on - strand, within PGA1_c02560 at 241.362 kb on + strand, within PGA1_c02560 at 241.365 kb on - strand, within PGA1_c02560 at 241.382 kb on + strand, within PGA1_c02560 at 241.386 kb on + strand, within PGA1_c02560 at 241.386 kb on + strand, within PGA1_c02560 at 241.399 kb on - strand, within PGA1_c02560 at 241.419 kb on + strand, within PGA1_c02560 at 241.503 kb on - strand at 241.518 kb on - strand at 241.597 kb on + strand, within PGA1_c02570 at 241.601 kb on + strand, within PGA1_c02570 at 241.605 kb on - strand, within PGA1_c02570 at 241.618 kb on + strand, within PGA1_c02570 at 241.645 kb on - strand, within PGA1_c02570 at 241.647 kb on - strand, within PGA1_c02570 at 241.658 kb on + strand, within PGA1_c02570 at 241.676 kb on - strand, within PGA1_c02570 at 241.746 kb on + strand, within PGA1_c02570 at 241.746 kb on + strand, within PGA1_c02570 at 241.824 kb on + strand, within PGA1_c02570 at 241.834 kb on + strand, within PGA1_c02570 at 241.865 kb on - strand, within PGA1_c02570 at 241.868 kb on - strand, within PGA1_c02570 at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.880 kb on + strand at 241.888 kb on - strand at 241.888 kb on - strand at 241.888 kb on - strand at 241.890 kb on + strand at 241.890 kb on + strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.898 kb on - strand at 241.958 kb on + strand at 241.966 kb on - strand at 241.966 kb on - strand at 241.966 kb on - strand at 242.030 kb on + strand at 242.099 kb on - strand, within PGA1_c02580 at 242.100 kb on - strand, within PGA1_c02580 at 242.177 kb on + strand, within PGA1_c02580 at 242.185 kb on - strand, within PGA1_c02580 at 242.205 kb on - strand, within PGA1_c02580 at 242.236 kb on - strand, within PGA1_c02580 at 242.285 kb on + strand, within PGA1_c02580 at 242.351 kb on + strand, within PGA1_c02580 at 242.351 kb on + strand, within PGA1_c02580 at 242.429 kb on + strand, within PGA1_c02580 at 242.434 kb on + strand, within PGA1_c02580 at 242.442 kb on - strand, within PGA1_c02580
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 239,807 - PGA1_c02540 0.63 +0.8 239,866 + PGA1_c02540 0.70 -0.8 239,866 + PGA1_c02540 0.70 +0.0 239,883 + PGA1_c02540 0.72 +1.0 239,883 + PGA1_c02540 0.72 +0.8 239,888 + PGA1_c02540 0.72 -0.1 239,898 + PGA1_c02540 0.73 -0.6 239,906 - PGA1_c02540 0.74 -0.2 239,974 - PGA1_c02540 0.83 +0.1 240,014 - PGA1_c02540 0.87 -0.6 240,019 + PGA1_c02540 0.88 -0.5 240,032 + PGA1_c02540 0.89 -0.1 240,069 + -0.0 240,074 + -0.0 240,074 + -0.3 240,074 + -0.8 240,074 + -0.3 240,074 + -0.3 240,074 + -2.0 240,074 + -0.4 240,074 + +0.1 240,082 - +0.7 240,082 - -1.1 240,082 - +0.3 240,082 - +0.1 240,082 - -0.6 240,082 - +0.7 240,082 - +0.2 240,082 - -1.4 240,082 - +1.1 240,117 - -0.8 240,154 + -0.6 240,164 + +0.1 240,196 - PGA1_c02550 0.10 -0.4 240,196 - PGA1_c02550 0.10 +0.1 240,197 - PGA1_c02550 0.10 -0.2 240,219 + PGA1_c02550 0.14 +0.1 240,237 - PGA1_c02550 0.16 +0.9 240,241 + PGA1_c02550 0.17 -0.1 240,244 - PGA1_c02550 0.18 -0.7 240,246 + PGA1_c02550 0.18 +0.4 240,254 - PGA1_c02550 0.19 +0.1 240,296 - PGA1_c02550 0.26 +1.4 240,320 + PGA1_c02550 0.29 -1.4 240,337 + PGA1_c02550 0.32 -0.4 240,337 + PGA1_c02550 0.32 -0.8 240,343 + PGA1_c02550 0.33 -0.5 240,343 + PGA1_c02550 0.33 +0.4 240,345 - PGA1_c02550 0.33 +0.4 240,351 - PGA1_c02550 0.34 +0.2 240,351 - PGA1_c02550 0.34 +0.1 240,363 + PGA1_c02550 0.36 +1.2 240,363 + PGA1_c02550 0.36 -0.5 240,565 + PGA1_c02550 0.67 -0.6 240,605 - PGA1_c02550 0.73 +0.7 240,613 + PGA1_c02550 0.75 -0.5 240,613 - PGA1_c02550 0.75 +0.8 240,643 - PGA1_c02550 0.79 +1.6 240,650 - PGA1_c02550 0.80 -0.3 240,665 + PGA1_c02550 0.83 -0.3 240,700 - PGA1_c02550 0.88 -0.1 240,720 - -1.1 240,736 + +0.9 240,736 + -1.5 240,737 - -1.1 240,744 - -1.2 240,786 - +0.3 240,812 - -0.7 240,892 + PGA1_c02560 0.16 -1.2 240,897 + PGA1_c02560 0.17 -0.3 240,903 - PGA1_c02560 0.18 -0.1 240,938 - PGA1_c02560 0.22 -0.1 240,973 - PGA1_c02560 0.27 +0.2 240,975 + PGA1_c02560 0.28 +0.9 240,983 - PGA1_c02560 0.29 +0.1 240,990 + PGA1_c02560 0.30 +0.4 240,998 - PGA1_c02560 0.31 +1.1 240,998 - PGA1_c02560 0.31 +0.6 241,036 - PGA1_c02560 0.36 +0.1 241,042 + PGA1_c02560 0.37 -0.0 241,061 + PGA1_c02560 0.39 -0.4 241,061 + PGA1_c02560 0.39 +0.4 241,061 + PGA1_c02560 0.39 +0.1 241,067 + PGA1_c02560 0.40 +0.4 241,067 + PGA1_c02560 0.40 +0.4 241,069 - PGA1_c02560 0.40 +1.2 241,069 - PGA1_c02560 0.40 +0.6 241,069 - PGA1_c02560 0.40 -0.2 241,069 - PGA1_c02560 0.40 -0.1 241,069 - PGA1_c02560 0.40 -0.1 241,075 - PGA1_c02560 0.41 -0.4 241,082 - PGA1_c02560 0.42 -0.2 241,082 - PGA1_c02560 0.42 -1.2 241,112 + PGA1_c02560 0.46 -1.3 241,112 + PGA1_c02560 0.46 -1.9 241,119 + PGA1_c02560 0.47 -0.1 241,143 + PGA1_c02560 0.51 -0.3 241,227 + PGA1_c02560 0.62 +0.7 241,230 - PGA1_c02560 0.63 -1.6 241,240 - PGA1_c02560 0.64 -0.5 241,340 + PGA1_c02560 0.78 +0.5 241,348 - PGA1_c02560 0.79 -0.6 241,362 + PGA1_c02560 0.81 +1.0 241,365 - PGA1_c02560 0.81 -0.1 241,382 + PGA1_c02560 0.84 -0.3 241,386 + PGA1_c02560 0.84 -1.0 241,386 + PGA1_c02560 0.84 +0.8 241,399 - PGA1_c02560 0.86 +0.9 241,419 + PGA1_c02560 0.89 -0.2 241,503 - +2.3 241,518 - -2.0 241,597 + PGA1_c02570 0.26 +2.3 241,601 + PGA1_c02570 0.27 +1.6 241,605 - PGA1_c02570 0.28 +0.9 241,618 + PGA1_c02570 0.31 +1.3 241,645 - PGA1_c02570 0.37 +1.4 241,647 - PGA1_c02570 0.38 +0.5 241,658 + PGA1_c02570 0.40 +0.8 241,676 - PGA1_c02570 0.44 +1.1 241,746 + PGA1_c02570 0.61 -0.1 241,746 + PGA1_c02570 0.61 +0.3 241,824 + PGA1_c02570 0.79 +2.2 241,834 + PGA1_c02570 0.81 +0.9 241,865 - PGA1_c02570 0.89 -0.2 241,868 - PGA1_c02570 0.89 +1.4 241,880 + +0.5 241,880 + +0.7 241,880 + -0.0 241,880 + +0.8 241,880 + +0.9 241,880 + +1.2 241,880 + +0.3 241,880 + +0.5 241,888 - +1.2 241,888 - -1.0 241,888 - -1.1 241,890 + +0.5 241,890 + +1.3 241,898 - -0.2 241,898 - -0.0 241,898 - +0.1 241,898 - -0.1 241,898 - +0.7 241,898 - -0.2 241,898 - -0.1 241,898 - -0.7 241,898 - +0.5 241,958 + -0.3 241,966 - +0.2 241,966 - +1.2 241,966 - -0.1 242,030 + -0.5 242,099 - PGA1_c02580 0.11 +0.2 242,100 - PGA1_c02580 0.11 -1.0 242,177 + PGA1_c02580 0.19 -0.7 242,185 - PGA1_c02580 0.20 +0.8 242,205 - PGA1_c02580 0.22 -0.6 242,236 - PGA1_c02580 0.26 +0.1 242,285 + PGA1_c02580 0.31 -0.1 242,351 + PGA1_c02580 0.38 -0.2 242,351 + PGA1_c02580 0.38 -0.4 242,429 + PGA1_c02580 0.47 -1.1 242,434 + PGA1_c02580 0.47 -0.6 242,442 - PGA1_c02580 0.48 -1.2
Or see this region's nucleotide sequence