Strain Fitness in Shewanella amazonensis SB2B around Sama_R0128

Experiment: Minimal media, pH7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Minimal media, pH7
4,108,640	+		Sama_3477	0.44	+0.1
4,108,641	-		Sama_3477	0.45	-0.2
4,108,641	-		Sama_3477	0.45	-0.5
4,108,777	+		Sama_3477	0.62	-0.2
4,108,777	+		Sama_3477	0.62	+0.8
4,108,777	+		Sama_3477	0.62	+0.0
4,108,778	-		Sama_3477	0.62	+0.4
4,108,780	+		Sama_3477	0.62	-0.2
4,108,780	+		Sama_3477	0.62	-0.9
4,108,780	+		Sama_3477	0.62	-1.0
4,108,780	+		Sama_3477	0.62	+0.5
4,108,780	+		Sama_3477	0.62	-2.0
4,108,780	+		Sama_3477	0.62	-0.2
4,108,780	+		Sama_3477	0.62	-1.3
4,108,780	+		Sama_3477	0.62	-1.5
4,108,780	+		Sama_3477	0.62	-1.4
4,108,780	+		Sama_3477	0.62	-0.8
4,108,780	+		Sama_3477	0.62	-0.2
4,108,781	-		Sama_3477	0.63	+1.3
4,108,781	-		Sama_3477	0.63	-1.2
4,108,781	-		Sama_3477	0.63	-1.0
4,108,781	-		Sama_3477	0.63	-0.9
4,108,781	-		Sama_3477	0.63	+0.7
4,108,781	-		Sama_3477	0.63	+0.3
4,108,781	-		Sama_3477	0.63	+0.5
4,108,781	-		Sama_3477	0.63	+0.8
4,108,781	-		Sama_3477	0.63	-1.6
4,108,801	+		Sama_3477	0.65	+0.8
4,108,842	+		Sama_3477	0.70	+0.3
4,108,842	+		Sama_3477	0.70	-0.4
4,108,842	+		Sama_3477	0.70	-0.6
4,108,843	-		Sama_3477	0.71	+0.4
4,108,843	-		Sama_3477	0.71	-2.2
4,108,863	-		Sama_3477	0.73	+0.4
4,108,863	-		Sama_3477	0.73	-2.8
4,108,893	+		Sama_3477	0.77	+0.1
4,108,893	+		Sama_3477	0.77	+0.8
4,108,893	+		Sama_3477	0.77	+0.6
4,108,893	+		Sama_3477	0.77	+1.0
4,108,893	+		Sama_3477	0.77	+0.0
4,108,893	+		Sama_3477	0.77	-2.2
4,108,893	+		Sama_3477	0.77	+0.0
4,108,894	-		Sama_3477	0.77	+1.9
4,108,894	-		Sama_3477	0.77	-0.2
4,108,894	-		Sama_3477	0.77	+1.0
4,108,894	-		Sama_3477	0.77	-0.7
4,108,894	-		Sama_3477	0.77	-0.9
4,108,924	+		Sama_3477	0.81	-0.7
4,108,924	+		Sama_3477	0.81	+0.4
4,108,925	-		Sama_3477	0.81	+0.5
4,108,925	-		Sama_3477	0.81	-0.2
4,108,925	-		Sama_3477	0.81	+0.8
4,108,957	+		Sama_3477	0.85	-0.5
4,108,984	+		Sama_3477	0.89	+1.1
4,108,984	+		Sama_3477	0.89	+0.1
4,108,984	+		Sama_3477	0.89	-0.4
4,108,984	+		Sama_3477	0.89	+0.0
4,108,984	+		Sama_3477	0.89	+0.2
4,108,984	+		Sama_3477	0.89	+0.1
4,108,985	-		Sama_3477	0.89	-2.0
4,108,989	+		Sama_3477	0.89	-0.6
4,108,989	+		Sama_3477	0.89	-1.0
4,108,990	-		Sama_3477	0.89	-1.8
4,108,990	-		Sama_3477	0.89	+0.5
4,109,055	+				-0.7
4,109,056	-				-1.2
4,109,056	-				+0.0
4,109,064	-				-0.7
4,109,090	+				+0.0
4,109,090	+				-1.3
4,109,090	+				+0.4
4,109,090	+				-0.2
4,109,090	+				+0.0
4,109,090	+				-0.7
4,109,090	+				-3.0
4,109,090	+				-0.7
4,109,091	-				+0.2
4,109,091	-				+0.6
4,109,091	-				+0.1
4,109,091	-				-0.2
4,109,091	-				-0.3
4,109,091	-				+0.5
4,109,091	-				+1.1
4,109,091	-				+0.9
4,109,096	+				-2.9
4,109,110	+				+0.3
4,109,111	-				+0.9
4,109,111	-				-0.2
4,109,111	-				+0.1
4,109,114	+				+2.0
4,109,114	+				-2.0
4,109,114	+				-0.4
4,109,114	+				+0.3
4,109,120	+				+0.0
4,109,120	+				+0.0
4,109,120	+				-1.1
4,109,120	+				+0.0
4,109,120	+				-0.5
4,109,120	+				-1.0
4,109,121	-				+1.0
4,109,121	-				+0.2
4,109,121	-				-1.6
4,109,124	+				-0.7
4,109,124	+				-1.1
4,109,125	-				+0.2
4,109,125	-				+0.8
4,109,125	-				+1.2
4,109,134	+				-0.6
4,109,134	+				-0.2
4,109,134	+				+0.4
4,109,134	+				+1.9
4,109,135	-				+0.6
4,109,135	-				+0.1
4,109,135	-				+1.6
4,109,169	+				+0.0
4,109,169	+				-0.4
4,109,169	+				-1.2
4,109,169	+				+1.4
4,109,169	+				+0.5
4,109,169	+				-1.8
4,109,170	-				-1.8
4,109,170	-				+1.1
4,109,170	-				+0.2
4,109,192	+				-0.1
4,109,192	+				-0.3
4,109,193	-				-2.8
4,109,257	+		Sama_3478	0.20	+2.0
4,109,277	-		Sama_3478	0.25	-0.7
4,109,277	-		Sama_3478	0.25	-0.0
4,109,297	+		Sama_3478	0.30	-2.1
4,109,297	+		Sama_3478	0.30	-0.5
4,109,297	+		Sama_3478	0.30	-2.0
4,109,297	+		Sama_3478	0.30	-0.0
4,109,297	+		Sama_3478	0.30	-2.7
4,109,301	+		Sama_3478	0.31	+2.3
4,109,301	+		Sama_3478	0.31	+0.0
4,109,302	-		Sama_3478	0.31	+0.5
4,109,358	-		Sama_3478	0.44	-0.1
4,109,358	-		Sama_3478	0.44	+0.7
4,109,370	+		Sama_3478	0.47	+1.0
4,109,379	+		Sama_3478	0.49	-0.7
4,109,384	+		Sama_3478	0.50	+0.8
4,109,384	+		Sama_3478	0.50	+0.6
4,109,384	+		Sama_3478	0.50	+0.3
4,109,385	-		Sama_3478	0.50	+2.4
4,109,385	-		Sama_3478	0.50	-0.6
4,109,385	-		Sama_3478	0.50	+0.3
4,109,385	-		Sama_3478	0.50	-1.0
4,109,385	-		Sama_3478	0.50	+0.8
4,109,426	-		Sama_3478	0.60	+0.7
4,109,473	+		Sama_3478	0.71	+1.0
4,109,473	+		Sama_3478	0.71	+1.6
4,109,473	+		Sama_3478	0.71	-0.5
4,109,473	+		Sama_3478	0.71	+0.6
4,109,473	+		Sama_3478	0.71	+1.1
4,109,473	+		Sama_3478	0.71	-0.7
4,109,473	+		Sama_3478	0.71	-0.2
4,109,473	+		Sama_3478	0.71	+0.9
4,109,473	+		Sama_3478	0.71	-0.6
4,109,474	-		Sama_3478	0.71	+0.0
4,109,474	-		Sama_3478	0.71	+2.1
4,109,474	-		Sama_3478	0.71	+0.4
4,109,474	-		Sama_3478	0.71	+0.7
4,109,474	-		Sama_3478	0.71	+0.3
4,109,474	-		Sama_3478	0.71	+0.5
4,109,474	-		Sama_3478	0.71	-1.1
4,109,474	-		Sama_3478	0.71	+0.3
4,109,474	-		Sama_3478	0.71	-0.3
4,109,474	-		Sama_3478	0.71	+0.1
4,109,475	+		Sama_3478	0.72	+1.1
4,109,475	+		Sama_3478	0.72	-0.2
4,109,475	+		Sama_3478	0.72	+0.5
4,109,475	+		Sama_3478	0.72	-1.7
4,109,506	-		Sama_3478	0.79	-0.8
4,109,506	-		Sama_3478	0.79	+0.1
4,109,532	-		Sama_3478	0.85	+1.3
4,109,537	+		Sama_3478	0.86	+0.2
4,109,537	+		Sama_3478	0.86	-0.4
4,109,537	+		Sama_3478	0.86	-1.7
4,109,537	+		Sama_3478	0.86	-0.8
4,109,537	+		Sama_3478	0.86	-2.4
4,109,538	-		Sama_3478	0.86	-1.4
4,109,538	-		Sama_3478	0.86	-0.3
4,109,538	-		Sama_3478	0.86	+0.2
4,109,538	-		Sama_3478	0.86	+0.6
4,109,540	+		Sama_3478	0.87	-1.4
4,109,540	+		Sama_3478	0.87	-0.1
4,109,540	+		Sama_3478	0.87	+1.3
4,109,540	+		Sama_3478	0.87	-0.2
4,109,540	+		Sama_3478	0.87	-1.4
4,109,541	-		Sama_3478	0.87	+1.3
4,109,541	-		Sama_3478	0.87	-0.6
4,109,541	-		Sama_3478	0.87	+0.2
4,109,593	+				+0.4
4,109,594	-				+0.2
4,109,594	-				-2.6
4,109,594	-				-0.7
4,109,658	+		Sama_R0128	0.39	+0.4
4,109,658	+		Sama_R0128	0.39	+0.2
4,109,659	-		Sama_R0128	0.41	-1.8
4,109,684	-		Sama_R0128	0.74	-1.5
4,109,684	-		Sama_R0128	0.74	+0.5
4,109,694	+		Sama_R0128	0.88	-1.2
4,109,694	+		Sama_R0128	0.88	+0.0
4,109,694	+		Sama_R0128	0.88	+0.7
4,109,694	+		Sama_R0128	0.88	+1.0
4,109,761	-				-0.1
4,109,761	-				+1.2
4,109,767	+				-0.3
4,109,773	+				-1.2
4,109,773	+				+0.3
4,109,774	-				+0.9
4,109,775	+				+0.6
4,109,775	+				+1.2
4,109,775	+				-0.8
4,109,776	-				+0.4
4,109,781	+				+0.5
4,109,781	+				-1.6
4,109,781	+				+1.3
4,109,781	+				+1.3
4,109,781	+				+0.2
4,109,782	-				+0.5
4,109,782	-				-1.6
4,109,835	+				-0.2
4,109,836	-				+1.4
4,109,836	-				-2.0
4,109,836	-				+0.7
4,109,845	+				+0.2
4,109,845	+				-2.0
4,109,845	+				+0.4
4,109,846	-				-0.0
4,109,846	-				+0.0
4,109,849	+				-1.1
4,109,849	+				-1.6
4,109,850	-				+0.0
4,109,850	-				+0.3
4,109,850	-				-1.4
4,110,044	+		Sama_3479	0.22	-0.7
4,110,045	-		Sama_3479	0.22	-0.1
4,110,057	-		Sama_3479	0.23	-3.3
4,110,091	+		Sama_3479	0.26	+1.9
4,110,091	+		Sama_3479	0.26	+1.1
4,110,091	+		Sama_3479	0.26	+0.1
4,110,092	-		Sama_3479	0.26	+0.1
4,110,132	+		Sama_3479	0.29	+1.0
4,110,133	-		Sama_3479	0.29	+0.5
4,110,133	-		Sama_3479	0.29	-0.7
4,110,234	+		Sama_3479	0.37	+1.2
4,110,234	+		Sama_3479	0.37	-0.4
4,110,234	+		Sama_3479	0.37	+1.1
4,110,234	+		Sama_3479	0.37	+0.0
4,110,234	+		Sama_3479	0.37	+0.9
4,110,234	+		Sama_3479	0.37	+1.5
4,110,234	+		Sama_3479	0.37	-0.3
4,110,234	+		Sama_3479	0.37	-1.8
4,110,235	-		Sama_3479	0.37	-0.8
4,110,235	-		Sama_3479	0.37	+0.8
4,110,235	-		Sama_3479	0.37	+1.3
4,110,235	-		Sama_3479	0.37	-0.4
4,110,235	-		Sama_3479	0.37	-1.3
4,110,235	-		Sama_3479	0.37	+0.4
4,110,235	-		Sama_3479	0.37	+0.1
4,110,235	-		Sama_3479	0.37	-1.7
4,110,235	-		Sama_3479	0.37	-0.1
4,110,235	-		Sama_3479	0.37	-0.2
4,110,239	+		Sama_3479	0.38	-0.3
4,110,239	+		Sama_3479	0.38	-0.8
4,110,239	+		Sama_3479	0.38	+0.7
4,110,239	+		Sama_3479	0.38	+0.8
4,110,239	+		Sama_3479	0.38	+1.9
4,110,240	-		Sama_3479	0.38	-0.2
4,110,240	-		Sama_3479	0.38	+2.2
4,110,240	-		Sama_3479	0.38	+1.3
4,110,240	-		Sama_3479	0.38	-0.5
4,110,240	-		Sama_3479	0.38	-0.4
4,110,295	+		Sama_3479	0.42	+0.4
4,110,295	+		Sama_3479	0.42	+2.4
4,110,295	+		Sama_3479	0.42	-1.3
4,110,295	+		Sama_3479	0.42	+1.0
4,110,295	+		Sama_3479	0.42	+0.5
4,110,295	+		Sama_3479	0.42	+0.3
4,110,296	-		Sama_3479	0.42	-0.3
4,110,296	-		Sama_3479	0.42	+1.5
4,110,296	-		Sama_3479	0.42	+2.6
4,110,296	-		Sama_3479	0.42	+0.5
4,110,296	-		Sama_3479	0.42	+0.5
4,110,296	-		Sama_3479	0.42	-0.6
4,110,296	-		Sama_3479	0.42	-0.6
4,110,311	+		Sama_3479	0.43	+0.3
4,110,312	-		Sama_3479	0.43	-0.2
4,110,323	+		Sama_3479	0.44	+0.1
4,110,323	+		Sama_3479	0.44	+0.3
4,110,335	+		Sama_3479	0.45	-2.0
4,110,336	-		Sama_3479	0.45	+0.6
4,110,362	-		Sama_3479	0.47	+0.0
4,110,362	-		Sama_3479	0.47	+2.0
4,110,362	-		Sama_3479	0.47	-0.2
4,110,364	+		Sama_3479	0.48	+0.2
4,110,364	+		Sama_3479	0.48	-0.1
4,110,365	-		Sama_3479	0.48	-0.8
4,110,365	-		Sama_3479	0.48	-0.0
4,110,365	-		Sama_3479	0.48	-1.1
4,110,365	-		Sama_3479	0.48	-0.6
4,110,365	-		Sama_3479	0.48	+0.5
4,110,472	-		Sama_3479	0.56	-0.3
4,110,472	-		Sama_3479	0.56	-0.2
4,110,498	+		Sama_3479	0.58	-0.3
4,110,528	+		Sama_3479	0.61	+0.6
4,110,528	+		Sama_3479	0.61	-0.1
4,110,529	-		Sama_3479	0.61	+0.4
4,110,529	-		Sama_3479	0.61	+0.0
4,110,545	+		Sama_3479	0.62	-0.7
4,110,545	+		Sama_3479	0.62	-0.2
4,110,545	+		Sama_3479	0.62	+2.1
4,110,545	+		Sama_3479	0.62	+0.2
4,110,546	-		Sama_3479	0.62	+0.0
4,110,546	-		Sama_3479	0.62	+1.0
4,110,576	-		Sama_3479	0.64	+0.2
4,110,579	+		Sama_3479	0.65	+0.0
4,110,579	+		Sama_3479	0.65	-1.7
4,110,579	+		Sama_3479	0.65	-1.1
4,110,579	+		Sama_3479	0.65	+0.7
4,110,579	+		Sama_3479	0.65	-1.6
4,110,579	+		Sama_3479	0.65	+0.9
4,110,579	+		Sama_3479	0.65	+1.0
4,110,579	+		Sama_3479	0.65	-2.1
4,110,579	+		Sama_3479	0.65	-0.7
4,110,579	+		Sama_3479	0.65	+0.6
4,110,579	+		Sama_3479	0.65	-0.5
4,110,579	+		Sama_3479	0.65	-1.0
4,110,579	+		Sama_3479	0.65	-0.4
4,110,580	-		Sama_3479	0.65	+0.6
4,110,580	-		Sama_3479	0.65	+0.4
4,110,580	-		Sama_3479	0.65	+1.2
4,110,580	-		Sama_3479	0.65	-2.3
4,110,580	-		Sama_3479	0.65	+0.0
4,110,580	-		Sama_3479	0.65	-1.9
4,110,580	-		Sama_3479	0.65	+0.7
4,110,580	-		Sama_3479	0.65	+0.8
4,110,580	-		Sama_3479	0.65	-0.3
4,110,580	-		Sama_3479	0.65	+0.5
4,110,584	+		Sama_3479	0.65	+1.4
4,110,585	-		Sama_3479	0.65	-0.8
4,110,692	+		Sama_3479	0.74	+0.4
4,110,692	+		Sama_3479	0.74	+1.2
4,110,693	-		Sama_3479	0.74	-0.7
4,110,694	+		Sama_3479	0.74	-0.7
4,110,694	+		Sama_3479	0.74	+2.1
4,110,694	+		Sama_3479	0.74	-0.5
4,110,694	+		Sama_3479	0.74	+1.5
4,110,694	+		Sama_3479	0.74	-1.2
4,110,694	+		Sama_3479	0.74	-0.2
4,110,695	-		Sama_3479	0.74	-0.2
4,110,695	-		Sama_3479	0.74	+0.5
4,110,695	-		Sama_3479	0.74	+0.2
4,110,695	-		Sama_3479	0.74	+1.3
4,110,700	+		Sama_3479	0.74	+0.1
4,110,700	+		Sama_3479	0.74	+1.4
4,110,700	+		Sama_3479	0.74	-1.5
4,110,700	+		Sama_3479	0.74	+0.9
4,110,700	+		Sama_3479	0.74	+2.6
4,110,700	+		Sama_3479	0.74	+2.1
4,110,700	+		Sama_3479	0.74	-3.0
4,110,700	+		Sama_3479	0.74	+0.5
4,110,700	+		Sama_3479	0.74	-1.3
4,110,700	+		Sama_3479	0.74	-0.2
4,110,701	-		Sama_3479	0.74	+1.3
4,110,701	-		Sama_3479	0.74	-1.5
4,110,701	-		Sama_3479	0.74	-2.5
4,110,701	-		Sama_3479	0.74	+0.2
4,110,701	-		Sama_3479	0.74	-0.9
4,110,701	-		Sama_3479	0.74	-0.2
4,110,701	-		Sama_3479	0.74	+0.4
4,110,701	-		Sama_3479	0.74	-1.8
4,110,701	-		Sama_3479	0.74	-0.7
4,110,701	-		Sama_3479	0.74	-0.8
4,110,701	-		Sama_3479	0.74	-0.6
4,110,701	-		Sama_3479	0.74	-0.6
4,110,701	-		Sama_3479	0.74	+1.0
4,110,701	-		Sama_3479	0.74	+0.3
4,110,701	-		Sama_3479	0.74	-0.7
4,110,701	-		Sama_3479	0.74	+0.8
4,110,701	-		Sama_3479	0.74	+0.3
4,110,701	-		Sama_3479	0.74	+0.4